Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0020681

Physical Location & Seq

Genomic Coordinates Forward (+)

45439050 .. 45439846

Gene Structure 797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025383

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCATGCCGGCCATTTCCTTCCAGCCATTAGACGAGCAGACGAGCCTGAACATGATGACACTAATTTCGACTACTCCAAAAGAACGCAATGGCTTCAAGCTGCCATTTTGGGAGCCAACGATGGTCTGGTTTTGGTTGCATCGCTGATGATGGGCGTGGGATCTGTGAAACAAGATGTGAATGGCATGCTCCTTCCCGGGGTTGCTGGGCTAGTAGCAGAGGCATGCATGCAGCATGGCCCTAGCGGAATTTGTCTCCATGTACGCTCAATACGACACGGAGATCTCCCAAACGAAGAGAGAGAGATGATGGAACAAAATGGCGGAGATGAGAATATATACTGCAGAAGAACAGGCAAAGAAGAAGAAGAATATCAGAATATGCTGCCGAGCCCGGTGAAAGCAGCTATAGCATCGGCCATTGCATTTTCTATAGGTGCAGTGGTGCCTTTGCTGGGAGCTGTGTTTATAAAGGACCATAAGGTAAGAATGGCTGTGGTGTCTGTTTTGGCAAGCGTCTCATTGGTGTGTTGGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

181

Amino Acids

19.52

Weight (kDa)

5.33

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	32 - 76	7.3e-08	VIT family
VIT1	PF01988	121 - 175	7.7e-08	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020681)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025383
rosa_multiflora	Rmu_sc0002169.1_g000026 Rmu_sc0002502.1_g000002
rosa_samantha	Rh3BG067000 Rh3CG065400
rosa_wichuraiana	Rw3G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	2 cut(s)	246, 324
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	2 cut(s)	10, 417
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	199, 455
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	3 cut(s)	101, 407, 461
AluI	AGCT	3 cut(s)	101, 407, 461
Alw26I	GTCTC	2 cut(s)	260, 523
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	10, 238, 417
ApeKI	GCWGC	4 cut(s)	101, 232, 385, 404
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspS9I	GGNCC	2 cut(s)	239, 475
AsuC2I	CCSGG	3 cut(s)	198, 199, 395
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	88, 244, 372, 416
BccI	CCATC	3 cut(s)	116, 145, 304
BcnI	CCSGG	3 cut(s)	198, 199, 395
BcoDI	GTCTC	2 cut(s)	260, 523
BfaI	CTAG	2 cut(s)	212, 243
BfmI	CTRYAG	3 cut(s)	343, 408, 432
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	4 cut(s)	102, 233, 386, 405
BlsI	GCNGC	4 cut(s)	103, 234, 387, 406
Bme1390I	CCNGG	3 cut(s)	198, 199, 395
Bme18I	GGWCC	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	239, 475
BmiI	GGNNCC	2 cut(s)	115, 447
BmrFI	CCNGG	3 cut(s)	198, 199, 395
BmsI	GCATC	2 cut(s)	149, 422
BpuMI	CCSGG	3 cut(s)	198, 199, 395
BsaJI	CCNNGG	2 cut(s)	197, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 455
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	95, 420
BseDI	CCNNGG	2 cut(s)	197, 198
BseLI	CCNNNNNNNGG	2 cut(s)	199, 455
BseMI	GCAATG	2 cut(s)	95, 420
BseXI	GCAGC	4 cut(s)	88, 244, 372, 416
BseYI	CCCAGC	2 cut(s)	206, 454
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	12, 240, 419
BshNI	GGYRCC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	9, 198, 395
BslI	CCNNNNNNNGG	2 cut(s)	199, 455
BsmAI	GTCTC	2 cut(s)	260, 523
BsmBI	CGTCTC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	12, 240, 419
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	161, 283
BspACI	CCGC	2 cut(s)	246, 324
BspANI	GGCC	3 cut(s)	12, 240, 419
BspLI	GGNNCC	2 cut(s)	115, 447
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	95, 420
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	197, 198
BssMI	GATC	2 cut(s)	161, 283
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	6 cut(s)	6, 10, 188, 226, 230, 514
BstKTI	GATC	2 cut(s)	164, 286
BstMAI	GTCTC	2 cut(s)	260, 523
BstMBI	GATC	2 cut(s)	161, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	4 cut(s)	8, 190, 228, 232
BstSCI	CCNGG	3 cut(s)	196, 197, 393
BstSFI	CTRYAG	3 cut(s)	343, 408, 432
BstV1I	GCAGC	4 cut(s)	88, 244, 372, 416
BstX2I	RGATCY	2 cut(s)	161, 283
BstYI	RGATCY	2 cut(s)	161, 283
BsuRI	GGCC	3 cut(s)	12, 240, 419
BtgZI	GCGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	6 cut(s)	6, 10, 188, 226, 230, 514
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	239, 475
Cfr9I	CCCGGG	1 cut(s)	197
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	7 cut(s)	5, 53, 187, 225, 229, 236, 260
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	2 cut(s)	163, 285
DpnII	GATC	2 cut(s)	161, 283
EaeI	YGGCCR	2 cut(s)	10, 417
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	197
EcoT22I	ATGCAT	2 cut(s)	6, 230
EcoT38I	GRGCYC	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	7 cut(s)	8, 56, 190, 228, 232, 239, 263
FatI	CATG	7 cut(s)	4, 52, 186, 224, 228, 235, 259
Fnu4HI	GCNGC	4 cut(s)	102, 233, 386, 405
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	102, 233, 386, 405
FspBI	CTAG	2 cut(s)	212, 243
GluI	GCNGC	4 cut(s)	102, 233, 386, 405
GsaI	CCCAGC	2 cut(s)	210, 458
HaeIII	GGCC	3 cut(s)	12, 240, 419
HapII	CCGG	3 cut(s)	9, 198, 395
HgaI	GACGC	1 cut(s)	505
Hin1II	CATG	7 cut(s)	8, 56, 190, 228, 232, 239, 263
HpaII	CCGG	3 cut(s)	9, 198, 395
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	29, 203
HpyCH4V	TGCA	7 cut(s)	4, 140, 228, 232, 345, 425, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
Hsp92II	CATG	7 cut(s)	8, 56, 190, 228, 232, 239, 263
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	161, 283
LmnI	GCTCC	3 cut(s)	113, 195, 458
LpnPI	CCDG	9 cut(s)	22, 36, 60, 113, 192, 211, 339, 408, 440
Lsp1109I	GCAGC	4 cut(s)	88, 244, 372, 416
LweI	GCATC	2 cut(s)	149, 422
MaeI	CTAG	2 cut(s)	212, 243
MalI	GATC	2 cut(s)	163, 285
MboI	GATC	2 cut(s)	161, 283
MboII	GAAGA	5 cut(s)	308, 360, 374, 377, 380
MflI	RGATCY	2 cut(s)	161, 283
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	2 cut(s)	64, 249
MnlI	CCTC	2 cut(s)	214, 529
Mph1103I	ATGCAT	2 cut(s)	6, 230
MroNI	GCCGGC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	3 cut(s)	9, 198, 395
MspR9I	CCNGG	3 cut(s)	198, 199, 395
MwoI	GCNNNNNNNGC	1 cut(s)	410
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	3 cut(s)	198, 199, 395
NdeII	GATC	2 cut(s)	161, 283
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	7 cut(s)	8, 56, 190, 228, 232, 239, 263
NlaIV	GGNNCC	2 cut(s)	115, 447
NmeAIII	GCCGAG	1 cut(s)	414
NsiI	ATGCAT	2 cut(s)	6, 230
NspI	RCATGY	4 cut(s)	8, 190, 228, 232
PaeI	GCATGC	4 cut(s)	8, 190, 228, 232
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	103, 234, 387, 406
PsiI	TTATAA	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	206, 454
PspN4I	GGNNCC	2 cut(s)	115, 447
PspPI	GGNCC	2 cut(s)	239, 475
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	161, 283
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	526
SatI	GCNGC	4 cut(s)	102, 233, 386, 405
Sau3AI	GATC	2 cut(s)	161, 283
Sau96I	GGNCC	2 cut(s)	239, 475
ScrFI	CCNGG	3 cut(s)	198, 199, 395
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	5 cut(s)	103, 409, 439, 463, 486
SfaNI	GCATC	2 cut(s)	149, 422
SfcI	CTRYAG	3 cut(s)	343, 408, 432
SinI	GGWCC	1 cut(s)	475
SmaI	CCCGGG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	526
SphI	GCATGC	4 cut(s)	8, 190, 228, 232
Sse9I	AATT	2 cut(s)	64, 249
SsiI	CCGC	2 cut(s)	246, 324
SspMI	CTAG	2 cut(s)	212, 243
StyD4I	CCNGG	3 cut(s)	196, 197, 393
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	64, 249
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	4 cut(s)	101, 232, 385, 404
TspGWI	ACGGA	1 cut(s)	294
TspMI	CCCGGG	1 cut(s)	197
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	4 cut(s)	8, 190, 228, 232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	212, 243
Zsp2I	ATGCAT	2 cut(s)	6, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.