Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0020681

Physical Location & Seq

Genomic Coordinates Reverse (-)

4266850 .. 4267632

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCATGCCGGCCATTTCCTTCCAGCCATTAGAACGCAATGGCTTCGAGCTGCCATTTTGGAAGCCAGCGATGGTCTGGTTTCGGTTGCATCGCTGATGATGGGCGTGGGAGCTGTGAAACAAGATGTGAAAGGCATGCTCCTTCCCGGGGTTGCTGGGCTAGTAGCAGTGGCATGCATGCAGCATGGCCCTAGGGGAATTTGTCTCCGTGTACGCTCAGTACGACACGGAGATCTCCCAAATGAAGAGAGAGATGATGGAACAAAATGGCGGAGACGAGAATACTGCAGAAGAGCAGGCAAAGAAGAAGAAGAATATGCTGCCGAGCCCGGTGAAAGCAGCATAGCATTGGCCATTGCATTTTCTATAGGTGCAGTGGTGCCTTTGCTGGGATCTGTGTTTATGAAGGACCACAAGGTAGGAACGGCTGTGGTGTCTGTTTTGGCAAGCGTTGCATTGGTTATGTTGGGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

158

Amino Acids

16.85

Weight (kDa)

7.79

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	15 - 59	1.2e-07	VIT family
VIT1	PF01988	103 - 157	1.5e-06	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020681)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025383
rosa_multiflora	Rmu_sc0002169.1_g000026 Rmu_sc0002502.1_g000002
rosa_samantha	Rh3BG067000 Rh3CG065400
rosa_wichuraiana	Rw3G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	2 cut(s)	10, 351
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	2 cut(s)	213, 222
AfiI	CCNNNNNNNGG	2 cut(s)	148, 389
AluBI	AGCT	2 cut(s)	50, 113
AluI	AGCT	2 cut(s)	50, 113
Alw26I	GTCTC	2 cut(s)	209, 268
AlwI	GGATC	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	10, 187, 351
ApeKI	GCWGC	4 cut(s)	50, 181, 320, 339
ApoI	RAATTY	1 cut(s)	198
AspA2I	CCTAGG	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	188, 409
AsuC2I	CCSGG	3 cut(s)	147, 148, 330
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	409
AvrII	CCTAGG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	37, 193, 307, 351
BccI	CCATC	3 cut(s)	65, 94, 251
BceAI	ACGGC	1 cut(s)	441
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 267, 301
BcnI	CCSGG	3 cut(s)	147, 148, 330
BcoDI	GTCTC	2 cut(s)	209, 268
BfaI	CTAG	2 cut(s)	161, 192
BfmI	CTRYAG	2 cut(s)	286, 366
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	4 cut(s)	51, 182, 321, 340
BlnI	CCTAGG	1 cut(s)	191
BlsI	GCNGC	4 cut(s)	52, 183, 322, 341
Bme1390I	CCNGG	3 cut(s)	147, 148, 330
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	188, 409
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	3 cut(s)	147, 148, 330
BmsI	GCATC	1 cut(s)	98
BpuMI	CCSGG	3 cut(s)	147, 148, 330
BsaJI	CCNNGG	3 cut(s)	146, 147, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 389
Bse118I	RCCGGY	1 cut(s)	8
Bse3DI	GCAATG	2 cut(s)	44, 354
BseDI	CCNNGG	3 cut(s)	146, 147, 191
BseLI	CCNNNNNNNGG	2 cut(s)	148, 389
BseMI	GCAATG	2 cut(s)	44, 354
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	37, 193, 307, 351
BseYI	CCCAGC	2 cut(s)	155, 388
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	12, 189, 353
BshNI	GGYRCC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	9, 147, 330
BslI	CCNNNNNNNGG	2 cut(s)	148, 389
BsmAI	GTCTC	2 cut(s)	209, 268
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	12, 189, 353
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	232, 392
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	3 cut(s)	12, 189, 353
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	2 cut(s)	44, 354
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	146, 147, 191
BssMI	GATC	2 cut(s)	232, 392
BssT1I	CCWWGG	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	240, 286
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	8 cut(s)	6, 10, 67, 137, 175, 179, 298, 448
BstDEI	CTNAG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	235, 395
BstMAI	GTCTC	2 cut(s)	209, 268
BstMBI	GATC	2 cut(s)	232, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	4 cut(s)	8, 139, 177, 181
BstSCI	CCNGG	3 cut(s)	145, 146, 328
BstSFI	CTRYAG	2 cut(s)	286, 366
BstV1I	GCAGC	4 cut(s)	37, 193, 307, 351
BstX2I	RGATCY	2 cut(s)	232, 392
BstYI	RGATCY	2 cut(s)	232, 392
BsuRI	GGCC	3 cut(s)	12, 189, 353
BtgZI	GCGATG	2 cut(s)	75, 84
BtsI	GCAGTG	2 cut(s)	174, 381
BtsIMutI	CAGTG	2 cut(s)	174, 381
Cac8I	GCNNGC	8 cut(s)	6, 10, 67, 137, 175, 179, 298, 448
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	188, 409
Cfr9I	CCCGGG	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	212, 221
CviAII	CATG	5 cut(s)	5, 136, 174, 178, 185
CviQI	GTAC	2 cut(s)	212, 221
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	2 cut(s)	234, 394
DpnII	GATC	2 cut(s)	232, 392
EaeI	YGGCCR	2 cut(s)	10, 351
Eam1104I	CTCTTC	2 cut(s)	240, 286
EarI	CTCTTC	2 cut(s)	240, 286
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	191
EcoT22I	ATGCAT	2 cut(s)	6, 179
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	5 cut(s)	8, 139, 177, 181, 188
FatI	CATG	5 cut(s)	4, 135, 173, 177, 184
Fnu4HI	GCNGC	4 cut(s)	51, 182, 321, 340
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	51, 182, 321, 340
FspBI	CTAG	2 cut(s)	161, 192
GluI	GCNGC	4 cut(s)	51, 182, 321, 340
GsaI	CCCAGC	2 cut(s)	159, 392
HaeIII	GGCC	3 cut(s)	12, 189, 353
HapII	CCGG	3 cut(s)	9, 147, 330
Hin1II	CATG	5 cut(s)	8, 139, 177, 181, 188
HpaII	CCGG	3 cut(s)	9, 147, 330
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	29, 152, 400
HpyCH4V	TGCA	8 cut(s)	4, 89, 177, 181, 288, 359, 374, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	5 cut(s)	8, 139, 177, 181, 188
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	232, 392
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	110, 144
LpnPI	CCDG	9 cut(s)	22, 36, 62, 79, 141, 160, 282, 343, 374
Lsp1109I	GCAGC	4 cut(s)	37, 193, 307, 351
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	161, 192
MalI	GATC	2 cut(s)	234, 394
MboI	GATC	2 cut(s)	232, 392
MboII	GAAGA	5 cut(s)	257, 303, 317, 320, 323
MflI	RGATCY	2 cut(s)	232, 392
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	1 cut(s)	198
MluNI	TGGCCA	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	353
Mph1103I	ATGCAT	2 cut(s)	6, 179
MroNI	GCCGGC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	3 cut(s)	9, 147, 330
MspR9I	CCNGG	3 cut(s)	147, 148, 330
MwoI	GCNNNNNNNGC	1 cut(s)	452
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	3 cut(s)	147, 148, 330
NdeII	GATC	2 cut(s)	232, 392
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	5 cut(s)	8, 139, 177, 181, 188
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	349
NsiI	ATGCAT	2 cut(s)	6, 179
NspI	RCATGY	4 cut(s)	8, 139, 177, 181
PaeI	GCATGC	4 cut(s)	8, 139, 177, 181
PciSI	GCTCTTC	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	52, 183, 322, 341
PspFI	CCCAGC	2 cut(s)	155, 388
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	188, 409
PstI	CTGCAG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	232, 392
RsaI	GTAC	2 cut(s)	213, 222
RsaNI	GTAC	2 cut(s)	212, 221
SapI	GCTCTTC	1 cut(s)	286
SatI	GCNGC	4 cut(s)	51, 182, 321, 340
Sau3AI	GATC	2 cut(s)	232, 392
Sau96I	GGNCC	2 cut(s)	188, 409
ScrFI	CCNGG	3 cut(s)	147, 148, 330
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	4 cut(s)	52, 115, 373, 420
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	286, 366
SinI	GGWCC	1 cut(s)	409
SmaI	CCCGGG	1 cut(s)	148
SphI	GCATGC	4 cut(s)	8, 139, 177, 181
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	161, 192
StyD4I	CCNGG	3 cut(s)	145, 146, 328
StyI	CCWWGG	1 cut(s)	191
TaqI	TCGA	1 cut(s)	46
TasI	AATT	1 cut(s)	198
TscAI	CASTG	2 cut(s)	174, 381
TseI	GCWGC	4 cut(s)	50, 181, 320, 339
TspDTI	ATGAA	2 cut(s)	258, 419
TspGWI	ACGGA	2 cut(s)	197, 243
TspMI	CCCGGG	1 cut(s)	146
TspRI	CASTG	2 cut(s)	174, 381
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	4 cut(s)	8, 139, 177, 181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	146
XmaJI	CCTAGG	1 cut(s)	191
XspI	CTAG	2 cut(s)	161, 192
Zsp2I	ATGCAT	2 cut(s)	6, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.