Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0020681

Physical Location & Seq

Genomic Coordinates Reverse (-)

4520736 .. 4521104

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTTCGAGCTGCCATTTTGGAAGCCAACGATGGTCTGGTTTCGGTTGCATCGCTGATGATGGGCGTGGGAGCTGTGAAACAAGATGTGAAAGGCATGCTCCTTCCCGGGGTTGCTGGGCTAGTAGCAGGGGCATGCAGCGTGGCCTTAGGGGAATTTGTCTCCGTGTACGCTCAGTACGACACGGAGATCTCCCAAATGAAGAGAGAGAGATGATGGAACAAAATGGCGGAGACGAGAATACTGCAGAAGAGCAGGCAAAGAAGAAGAAGAATATGCTGCCGAGCCCGGTGAAGGCAGCTATAGCATTGGCCATTGCATTTTCTATAGGTGCAGTGGTGCCTTTGCTGGGAGCTATGTTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

8.9

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020681)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000025383
rosa_multiflora	Rmu_sc0002169.1_g000026 Rmu_sc0002502.1_g000002
rosa_samantha	Rh3BG067000 Rh3CG065400
rosa_wichuraiana	Rw3G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	171, 180
AfiI	CCNNNNNNNGG	3 cut(s)	110, 295, 350
AluBI	AGCT	4 cut(s)	12, 75, 302, 356
AluI	AGCT	4 cut(s)	12, 75, 302, 356
Alw26I	GTCTC	2 cut(s)	167, 228
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	145, 312
ApeKI	GCWGC	4 cut(s)	12, 139, 280, 299
ApoI	RAATTY	1 cut(s)	156
AsuC2I	CCSGG	3 cut(s)	109, 110, 290
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	151, 267, 311
BccI	CCATC	3 cut(s)	27, 56, 211
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BcnI	CCSGG	3 cut(s)	109, 110, 290
BcoDI	GTCTC	2 cut(s)	167, 228
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	3 cut(s)	246, 303, 327
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	4 cut(s)	13, 140, 281, 300
BlsI	GCNGC	4 cut(s)	14, 141, 282, 301
Bme1390I	CCNGG	3 cut(s)	109, 110, 290
BmeT110I	CYCGRG	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	3 cut(s)	109, 110, 290
BmsI	GCATC	1 cut(s)	60
BpuMI	CCSGG	3 cut(s)	109, 110, 290
BsaJI	CCNNGG	2 cut(s)	108, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 295, 350
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	108, 109
BseLI	CCNNNNNNNGG	3 cut(s)	110, 295, 350
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	151, 267, 311
BseYI	CCCAGC	2 cut(s)	117, 349
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	147, 314
BshNI	GGYRCC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	109, 290
BslI	CCNNNNNNNGG	3 cut(s)	110, 295, 350
BsmAI	GTCTC	2 cut(s)	167, 228
BsmBI	CGTCTC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	147, 314
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	2 cut(s)	147, 314
BspCNI	CTCAG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	108, 109
BssMI	GATC	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	198, 246
BstC8I	GCNNGC	3 cut(s)	99, 137, 258
BstDEI	CTNAG	2 cut(s)	149, 175
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	167, 228
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	2 cut(s)	101, 139
BstSCI	CCNGG	3 cut(s)	107, 108, 288
BstSFI	CTRYAG	3 cut(s)	246, 303, 327
BstV1I	GCAGC	3 cut(s)	151, 267, 311
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	147, 314
BtgZI	GCGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	3 cut(s)	99, 137, 258
Cfr9I	CCCGGG	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	170, 179
CviAII	CATG	2 cut(s)	98, 136
CviQI	GTAC	2 cut(s)	170, 179
DdeI	CTNAG	2 cut(s)	149, 175
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	198, 246
EarI	CTCTTC	2 cut(s)	198, 246
EciI	GGCGGA	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	101, 139
FaiI	YATR	7 cut(s)	99, 137, 278, 305, 329, 359, 365
FatI	CATG	2 cut(s)	97, 135
Fnu4HI	GCNGC	4 cut(s)	13, 140, 281, 300
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	13, 140, 281, 300
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	4 cut(s)	13, 140, 281, 300
GsaI	CCCAGC	2 cut(s)	121, 353
HaeIII	GGCC	2 cut(s)	147, 314
HapII	CCGG	2 cut(s)	109, 290
Hin1II	CATG	2 cut(s)	101, 139
HpaII	CCGG	2 cut(s)	109, 290
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	114, 289
HpyCH4V	TGCA	5 cut(s)	51, 139, 248, 320, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	149, 175
Hsp92II	CATG	2 cut(s)	101, 139
Kzo9I	GATC	1 cut(s)	190
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	3 cut(s)	72, 106, 353
LpnPI	CCDG	7 cut(s)	24, 103, 115, 122, 242, 303, 335
Lsp1109I	GCAGC	3 cut(s)	151, 267, 311
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	123
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	5 cut(s)	215, 263, 277, 280, 283
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	314
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	2 cut(s)	109, 290
MspR9I	CCNGG	3 cut(s)	109, 110, 290
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	3 cut(s)	109, 110, 290
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	101, 139
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	1 cut(s)	309
NspI	RCATGY	2 cut(s)	101, 139
PaeI	GCATGC	2 cut(s)	101, 139
PciSI	GCTCTTC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	14, 141, 282, 301
PspFI	CCCAGC	2 cut(s)	117, 349
PspN4I	GGNNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	171, 180
RsaNI	GTAC	2 cut(s)	170, 179
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	4 cut(s)	13, 140, 281, 300
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	3 cut(s)	109, 110, 290
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	5 cut(s)	14, 77, 304, 334, 358
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	3 cut(s)	246, 303, 327
SmaI	CCCGGG	1 cut(s)	110
SphI	GCATGC	2 cut(s)	101, 139
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	107, 108, 288
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	156
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	4 cut(s)	12, 139, 280, 299
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	2 cut(s)	155, 201
TspMI	CCCGGG	1 cut(s)	108
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	2 cut(s)	101, 139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.