RLG00000025875

Protein of unknown function (DUF1666)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
48870182 .. 48870780
599 bp
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UTR
Exon/CDS
Intron
RLM00000025875

Sequence Viewer

Length: 468 bp
ATGATTGCTCAGTTTTCCGACATCTTTGTGTTCAGATTCTTGAGCACACTCTTGGTCGAAGAAGAGAATTCTTCGATGATGAATTCCAGTTGCTCTAGCACTGTACAGGAAAGAGCTGAATCTGATTCTGATTTGATTTGTTCGAGTAAAGATGATGATGAAGTAGGTGCTTTGGAAGACATTGGATTGCAGAAGCCTGATGGTTTTGATGAAGAAGAAGATGATGTGATGGAACAAACTAGAGAGCTAGAAAAGTTATTTGAAATGGAGTTCAAGAAAGTCAGAGCTACAACTGGTCTGCCTACAATTCTTGAAGAATCTGAGTTTCTGGATATGGATGACTTCAAGACACTCAAGATTGATGAAAAATACCAACATGGAGACAGCATGAGGGTGATTCACAAGTTCTACAATAGTTGCCGGACTCGAATGCGCAAGTTGGGTATTTTGAATTACCAGAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

4.46

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020030)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 466
Acc16I TGCGCA 1 cut(s) 434
AcsI RAATTY 2 cut(s) 67, 82
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 5 cut(s) 263, 274, 314, 346, 451
AluBI AGCT 3 cut(s) 116, 247, 287
AluI AGCT 3 cut(s) 116, 247, 287
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 375
ApoI RAATTY 2 cut(s) 67, 82
AspLEI GCGC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 2 cut(s) 194, 223
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 3 cut(s) 96, 240, 248
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 61, 338
Bse1I ACTGG 2 cut(s) 87, 298
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 23, 312
BseNI ACTGG 2 cut(s) 87, 298
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 22, 313
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 2 cut(s) 87, 298
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 9, 321
BstF5I GGATG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 435
BstMAI GTCTC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 104
CviAII CATG 2 cut(s) 377, 388
CviJI RGCY 4 cut(s) 116, 196, 247, 287
CviKI_1 RGCY 4 cut(s) 116, 196, 247, 287
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 9, 321
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EcoRI GAATTC 2 cut(s) 67, 82
FaeI CATG 2 cut(s) 380, 391
FaiI YATR 4 cut(s) 335, 378, 389, 466
FatI CATG 2 cut(s) 376, 387
FokI GGATG 1 cut(s) 350
FspBI CTAG 3 cut(s) 96, 240, 248
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
HapII CCGG 1 cut(s) 421
HhaI GCGC 1 cut(s) 435
Hin1II CATG 2 cut(s) 380, 391
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 6 cut(s) 36, 119, 125, 317, 397, 424
HpaII CCGG 1 cut(s) 421
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 6 cut(s) 19, 35, 124, 130, 284, 322
Hpy188III TCNNGA 6 cut(s) 40, 274, 311, 329, 346, 355
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 9, 321
Hsp92II CATG 2 cut(s) 380, 391
HspAI GCGC 1 cut(s) 433
LpnPI CCDG 6 cut(s) 92, 100, 210, 279, 314, 434
MaeI CTAG 3 cut(s) 96, 240, 248
MboII GAAGA 8 cut(s) 63, 71, 74, 188, 224, 227, 230, 326
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 4 cut(s) 67, 82, 306, 451
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 26, 392
MspI CCGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 435
NlaIII CATG 2 cut(s) 380, 391
NsbI TGCGCA 1 cut(s) 434
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 5 cut(s) 36, 119, 125, 317, 397
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 466
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 26, 392
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 118, 169, 249, 289
SmiMI CAYNNNNRTG 2 cut(s) 26, 392
SmlI CTYRAG 2 cut(s) 40, 353
SmoI CTYRAG 2 cut(s) 40, 353
Sse9I AATT 4 cut(s) 67, 82, 306, 451
SspMI CTAG 3 cut(s) 96, 240, 248
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 4 cut(s) 57, 74, 143, 427
TasI AATT 4 cut(s) 67, 82, 306, 451
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 5 cut(s) 36, 119, 125, 317, 397
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 4 cut(s) 95, 174, 225, 378
TspRI CASTG 1 cut(s) 106
XapI RAATTY 2 cut(s) 67, 82
XspI CTAG 3 cut(s) 96, 240, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.