Rh3BG014400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
892389 .. 894035
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG014400.1

Sequence Viewer

Length: 225 bp
ATGGATGACTTGAAGACACTCAAGATTGATGAAAAATACCAACATGGAGACAGCATGAGGTCTAGGCACGGTGGTTGCGGTGGCGCTGTTTGGTCTGAGCAAGAAATTCGATGTGATGGCGCGGGTCATGGTTGCAGTCAAGCTTGTCTATTGGGCTGGCTTGCTCTCTTTGGGTCTGGGATAGGGCCTTTGGGCCTCAACTTGCACTTCATGGGAGTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.89

Weight (kDa)

6.0

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020030)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 2 cut(s) 78, 122
AcsI RAATTY 1 cut(s) 105
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 2 cut(s) 185, 193
ApoI RAATTY 1 cut(s) 105
AspLEI GCGC 2 cut(s) 86, 122
AspS9I GGNCC 2 cut(s) 185, 193
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 185, 193
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 5
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 187, 195
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 2 cut(s) 187, 195
BspACI CCGC 2 cut(s) 78, 122
BspANI GGCC 2 cut(s) 187, 195
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 158, 162
BstDEI CTNAG 2 cut(s) 96, 222
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 122
BstMAI GTCTC 1 cut(s) 42
BstUI CGCG 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 187, 195
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 158, 162
CfoI GCGC 2 cut(s) 86, 122
Cfr13I GGNCC 2 cut(s) 185, 193
CviAII CATG 4 cut(s) 44, 55, 128, 211
CviJI RGCY 5 cut(s) 143, 156, 160, 187, 195
CviKI_1 RGCY 5 cut(s) 143, 156, 160, 187, 195
DdeI CTNAG 2 cut(s) 96, 222
EcoO109I RGGNCCY 1 cut(s) 185
FaeI CATG 4 cut(s) 47, 58, 131, 214
FaiI YATR 4 cut(s) 45, 56, 129, 212
FatI CATG 4 cut(s) 43, 54, 127, 210
FauI CCCGC 1 cut(s) 115
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 63
GlaI GCGC 2 cut(s) 85, 121
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 187, 195
HhaI GCGC 2 cut(s) 86, 122
Hin1II CATG 4 cut(s) 47, 58, 131, 214
Hin6I GCGC 2 cut(s) 84, 120
HinP1I GCGC 2 cut(s) 84, 120
HindIII AAGCTT 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 135, 205
HpyF3I CTNAG 2 cut(s) 96, 222
Hsp92II CATG 4 cut(s) 47, 58, 131, 214
HspAI GCGC 2 cut(s) 84, 120
LpnPI CCDG 2 cut(s) 142, 162
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 105
MnlI CCTC 2 cut(s) 51, 206
MslI CAYNNNNRTG 1 cut(s) 215
MvnI CGCG 1 cut(s) 122
NlaIII CATG 4 cut(s) 47, 58, 131, 214
NmuCI GTSAC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 185, 193
RseI CAYNNNNRTG 1 cut(s) 215
Sau96I GGNCC 2 cut(s) 185, 193
SetI ASST 2 cut(s) 62, 145
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 78, 122
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 105
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 45, 199
XapI RAATTY 1 cut(s) 105
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.