Rroxscaffold_7G00203750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020030
Physical Location & Seq
Forward (+)
52669837 .. 52677983
8147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203750.1

Sequence Viewer

Length: 603 bp
ATGGCGTTGGGTCAAGGCTGTAGTCAAGCTTGCCTATCGAGTTGCCTTTCTCTCTTTGGGTCTAGCATAGAGCCTTTGGGCTTCACCTTGGGCTTCATAAAAGTGGAGGTGACTTTGACACAGCATGTCAAAGGTGATCTTGGCCCGAGCCCGAGCTCATGTGACAGCCCGTTTGACGGTGTTCCCGAAGGTAACACCCTTGATTGTGCCGATGATGCTAGCGGTATCATAGGCATGACCCATTATAGAGGCTGCAACAAAGAAGTCGTACTAGAGAGTCCAAGTTCAAAGCATTCCATCTTTGAGAAAGGAGGAGATCGAGAGAAGCTATTCCTAGGTTCGCAACATACAACCGTTTCGGTACTTCGTGCATTCAAGGGGGAGTGGCGGCGTGCGCCCGAGCGACTACCAAGAGAAGGTCGTGGAGAGGGTGGTGAGTACACATCGCAAAGGTCACCCCTAGAAGGAAAAGGTGATGCGGCGAGGAAGCTCGGGGCTGGCGGGAGCTCCATGATAGAGCAAATAGCGTTGGATGTCCTGCTAGTGGGGTCTACCGTTGTGGTGGGCACTACAAAGGATGGGTTGGAAATGCACCAGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

21.16

Weight (kDa)

5.75

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020030)

Species Orthologous Gene IDs
rosa_laevigata RLG00000025875
rosa_multiflora Rmu_sc0003116.1_g000029 Rmu_sc0025983.1_g000001 Rmu_sc0027086.1_g000001
rosa_roxburghii Rroxscaffold_7G00203750
rosa_samantha Rh3AG014600 Rh3BG014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 551
AciI CCGC 5 cut(s) 222, 388, 479, 501, 598
AfaI GTAC 3 cut(s) 270, 363, 440
AfiI CCNNNNNNNGG 4 cut(s) 176, 416, 464, 544
AgsI TTSAA 2 cut(s) 288, 376
AluBI AGCT 5 cut(s) 29, 156, 328, 490, 507
AluI AGCT 5 cut(s) 29, 156, 328, 490, 507
Alw21I GWGCWC 2 cut(s) 158, 509
Ama87I CYCGRG 4 cut(s) 145, 151, 398, 491
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 252
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 329
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 6 cut(s) 76, 121, 146, 446, 447, 485
AsuNHI GCTAGC 1 cut(s) 218
AvaI CYCGRG 4 cut(s) 145, 151, 398, 491
AvrII CCTAGG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 569
BanII GRGCYC 3 cut(s) 152, 158, 509
Bbv12I GWGCWC 2 cut(s) 158, 509
BbvI GCAGC 1 cut(s) 239
BccI CCATC 2 cut(s) 305, 572
BfaI CTAG 6 cut(s) 63, 219, 272, 335, 461, 542
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 3 cut(s) 253, 389, 480
BlnI CCTAGG 1 cut(s) 334
BlsI GCNGC 3 cut(s) 254, 390, 481
BmeT110I CYCGRG 4 cut(s) 145, 151, 398, 491
BmgT120I GGNCC 1 cut(s) 143
BmsI GCATC 2 cut(s) 205, 466
BmtI GCTAGC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 87, 334
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 416, 464, 544
BseDI CCNNGG 2 cut(s) 87, 334
BseGI GGATG 2 cut(s) 538, 583
BseLI CCNNNNNNNGG 4 cut(s) 176, 416, 464, 544
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 2 cut(s) 158, 509
BsiHKCI CYCGRG 4 cut(s) 145, 151, 398, 491
BslI CCNNNNNNNGG 4 cut(s) 176, 416, 464, 544
BsmI GAATGC 2 cut(s) 292, 371
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 4 cut(s) 145, 151, 398, 491
Bsp1286I GDGCHC 4 cut(s) 152, 158, 509, 569
Bsp143I GATC 2 cut(s) 136, 316
BspACI CCGC 5 cut(s) 222, 388, 479, 501, 598
BspANI GGCC 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 87, 334
BssMI GATC 2 cut(s) 136, 316
BssT1I CCWWGG 2 cut(s) 87, 334
Bst4CI ACNGT 3 cut(s) 179, 355, 556
BstC8I GCNNGC 4 cut(s) 31, 220, 393, 499
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 2 cut(s) 538, 583
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 2 cut(s) 139, 319
BstMBI GATC 2 cut(s) 136, 316
BstMWI GCNNNNNNNGC 2 cut(s) 215, 394
BstNSI RCATGY 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 538, 583
Cac8I GCNNGC 4 cut(s) 31, 220, 393, 499
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 3 cut(s) 269, 362, 439
CviAII CATG 4 cut(s) 125, 159, 235, 511
CviQI GTAC 3 cut(s) 269, 362, 439
DpnI GATC 2 cut(s) 138, 318
DpnII GATC 2 cut(s) 136, 316
Ecl136II GAGCTC 2 cut(s) 156, 507
Eco130I CCWWGG 2 cut(s) 87, 334
Eco24I GRGCYC 3 cut(s) 152, 158, 509
Eco53kI GAGCTC 2 cut(s) 156, 507
Eco88I CYCGRG 4 cut(s) 145, 151, 398, 491
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 2 cut(s) 156, 507
EcoO65I GGTNACC 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 87, 334
EcoT38I GRGCYC 3 cut(s) 152, 158, 509
ErhI CCWWGG 2 cut(s) 87, 334
FaeI CATG 4 cut(s) 128, 162, 238, 514
FaiI YATR 9 cut(s) 68, 98, 126, 160, 230, 236, 246, 348, 512
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 4 cut(s) 124, 158, 234, 510
FauI CCCGC 1 cut(s) 494
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 3 cut(s) 253, 389, 480
FokI GGATG 2 cut(s) 545, 590
FriOI GRGCYC 3 cut(s) 152, 158, 509
Fsp4HI GCNGC 3 cut(s) 253, 389, 480
FspBI CTAG 6 cut(s) 63, 219, 272, 335, 461, 542
GlaI GCGC 1 cut(s) 396
GluI GCNGC 3 cut(s) 253, 389, 480
HaeIII GGCC 1 cut(s) 144
HhaI GCGC 1 cut(s) 397
Hin1II CATG 4 cut(s) 128, 162, 238, 514
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 277
HphI GGTGA 6 cut(s) 76, 121, 146, 446, 447, 485
Hpy166II GTNNAC 2 cut(s) 441, 552
Hpy188III TCNNGA 2 cut(s) 185, 320
Hpy8I GTNNAC 2 cut(s) 441, 552
HpyAV CCTTC 3 cut(s) 182, 410, 458
HpyCH4III ACNGT 3 cut(s) 179, 355, 556
HpyCH4V TGCA 3 cut(s) 255, 371, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 394
Hsp92II CATG 4 cut(s) 128, 162, 238, 514
HspAI GCGC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 136, 316
LmnI GCTCC 2 cut(s) 504, 512
LpnPI CCDG 2 cut(s) 483, 551
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 2 cut(s) 205, 466
MaeI CTAG 6 cut(s) 63, 219, 272, 335, 461, 542
MaeIII GTNAC 4 cut(s) 109, 161, 191, 453
MalI GATC 2 cut(s) 138, 318
MboI GATC 2 cut(s) 136, 316
MhlI GDGCHC 4 cut(s) 152, 158, 509, 569
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 2 cut(s) 510, 564
MnlI CCTC 5 cut(s) 100, 242, 305, 421, 477
MroXI GAANNNNTTC 1 cut(s) 329
MslI CAYNNNNRTG 2 cut(s) 101, 233
MspA1I CMGCKG 1 cut(s) 598
Mva1269I GAATGC 2 cut(s) 292, 371
MwoI GCNNNNNNNGC 2 cut(s) 215, 394
NdeII GATC 2 cut(s) 136, 316
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 128, 162, 238, 514
NmuCI GTSAC 3 cut(s) 109, 161, 453
NspI RCATGY 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 2 cut(s) 292, 371
PdmI GAANNNNTTC 1 cut(s) 329
PkrI GCNGC 3 cut(s) 254, 390, 481
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp124BI GAGCTC 2 cut(s) 158, 509
PspEI GGTNACC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 143
RsaI GTAC 3 cut(s) 270, 363, 440
RsaNI GTAC 3 cut(s) 269, 362, 439
RseI CAYNNNNRTG 2 cut(s) 101, 233
SacI GAGCTC 2 cut(s) 158, 509
SatI GCNGC 3 cut(s) 253, 389, 480
Sau3AI GATC 2 cut(s) 136, 316
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 286
SduI GDGCHC 4 cut(s) 152, 158, 509, 569
SfaNI GCATC 2 cut(s) 205, 466
SfcI CTRYAG 1 cut(s) 19
SmiMI CAYNNNNRTG 2 cut(s) 101, 233
SsiI CCGC 5 cut(s) 222, 388, 479, 501, 598
SspMI CTAG 6 cut(s) 63, 219, 272, 335, 461, 542
SstI GAGCTC 2 cut(s) 158, 509
StyI CCWWGG 2 cut(s) 87, 334
TaaI ACNGT 3 cut(s) 179, 355, 556
TaqI TCGA 2 cut(s) 38, 319
TatI WGTACW 1 cut(s) 438
TauI GCSGC 2 cut(s) 391, 482
TseFI GTSAC 3 cut(s) 109, 161, 453
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 3 cut(s) 109, 161, 453
TspDTI ATGAA 1 cut(s) 85
XceI RCATGY 1 cut(s) 128
XmaJI CCTAGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 6 cut(s) 63, 219, 272, 335, 461, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.