RLG00000026476

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0022976
Physical Location & Seq
Forward (+)
3258420 .. 3258834
415 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026476

Sequence Viewer

Length: 312 bp
ATGGAAACACAAACAGTTCCCTTGCTGAGCACCAAGGCCGAGCCGGAACGCGACTATGCTCCGGTGAAGAGCTTCGGGGAGGGCCTGTCGGTTGGTTGGAAGGAGACGGTGAAGCTATGGAAAGTTGCAGCTCCGGTAGCTTGTACGACTCTTTTCCATTACCTGATTCAGTCCATCACCACCATCTTCATCGGGCATCTCGGAGATCTTCAGCTCTCTGCTGTTTCCCTCGCTCATAATGTCATCAACTCCATCGCCTTTGGCTTCCTGGCTAGGACTAAAGATTCTCTCTCGTATAAAACTCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

104

Amino Acids

11.29

Weight (kDa)

8.79

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022976)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026476
rosa_multiflora Rmu_sc0005268.1_g000006
rosa_samantha Rh1BG384400
rosa_wichuraiana Rw0G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 5 cut(s) 72, 115, 131, 140, 214
AluI AGCT 5 cut(s) 72, 115, 131, 140, 214
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 2 cut(s) 36, 82
ApeKI GCWGC 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 3 cut(s) 76, 121, 169
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 140
BccI CCATC 3 cut(s) 182, 191, 260
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 205
BisI GCNGC 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 2 cut(s) 61, 133
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 38, 84
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 44, 62, 134
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 38, 84
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 205
Bsp1720I GCTNAGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 38, 84
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 51
BspQI GCTCTTC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 16, 109
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 2 cut(s) 38, 84
BtgZI GCGATG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 144
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 98
FaiI YATR 4 cut(s) 57, 118, 237, 297
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 38, 84
HapII CCGG 3 cut(s) 44, 62, 134
HinfI GANTC 3 cut(s) 148, 166, 284
HpaII CCGG 3 cut(s) 44, 62, 134
HphI GGTGA 3 cut(s) 76, 121, 169
Hpy188I TCNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 16, 109
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 64, 136
LpnPI CCDG 7 cut(s) 57, 75, 98, 147, 176, 254, 281
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 3 cut(s) 79, 178, 200
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 73, 239
MroXI GAANNNNTTC 1 cut(s) 71
MspI CCGG 3 cut(s) 44, 62, 134
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 205
NmeAIII GCCGAG 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 166, 284
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 62
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 74, 117, 133, 142, 165, 216
SfaNI GCATC 1 cut(s) 205
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 16, 109
TfiI GAWTC 2 cut(s) 166, 284
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.