Rh1BG384400

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0022976
Physical Location & Seq
Reverse (-)
51245838 .. 51253411
7574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG384400.1

Sequence Viewer

Length: 366 bp
ATGGAAACACAAACAGTTCCCTTGCTGAGCATCAAGGCCGAGCCAGAGCTCGACTATGCTCCGGTGAAGAGCTTCAGGGAGGGCCTGTCGGTTGGTGGGAAGGAGACGGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTTACGACTCTTTTTCAGTACCTGATTCAGTCCATCACTACTATCTTTGTCGGACATCTCGGAGACCTTCAGCTCTCTGCCGTTTCCCTCTCTCATAATGTCATCAACGCCATCGCCTTCGGCTTCCTGGGACTTTATGGTGGCATAATATGCGGAAGTGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAATCAACTGGGACAATGAGATCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

121

Amino Acids

13.2

Weight (kDa)

5.53

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 45 - 96 1.9e-07 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022976)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026476
rosa_multiflora Rmu_sc0005268.1_g000006
rosa_samantha Rh1BG384400
rosa_wichuraiana Rw0G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AcuI CTGAAG 3 cut(s) 58, 194, 290
AfaI GTAC 1 cut(s) 161
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 5 cut(s) 49, 72, 115, 131, 214
AluI AGCT 5 cut(s) 49, 72, 115, 131, 214
Alw21I GWGCWC 2 cut(s) 51, 304
Alw26I GTCTC 2 cut(s) 98, 198
AlwNI CAGNNNCTG 1 cut(s) 163
AoxI GGCC 2 cut(s) 36, 82
ApeKI GCWGC 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 76, 121
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 51, 304
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 182, 260
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 98, 198
BglII AGATCT 1 cut(s) 309
BisI GCNGC 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 355
Bpu1102I GCTNAGC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 2 cut(s) 61, 133
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 38, 84
BsiHKAI GWGCWC 2 cut(s) 51, 304
BsiSI CCGG 2 cut(s) 62, 134
BslFI GGGAC 2 cut(s) 285, 362
BsmAI GTCTC 2 cut(s) 98, 198
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 285, 362
BsnI GGCC 2 cut(s) 38, 84
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 51, 304
Bsp143I GATC 2 cut(s) 309, 357
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 38, 84
BspCNI CTCAG 1 cut(s) 18
BspQI GCTCTTC 2 cut(s) 62, 309
BspTNI GGTCTC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 2 cut(s) 309, 357
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 16, 109
Bst6I CTCTTC 2 cut(s) 62, 309
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 26
BstKTI GATC 2 cut(s) 312, 360
BstMAI GTCTC 2 cut(s) 98, 198
BstMBI GATC 2 cut(s) 309, 357
BstMWI GCNNNNNNNGC 2 cut(s) 137, 291
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 2 cut(s) 38, 84
BtgZI GCGATG 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 160
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 311, 359
DpnII GATC 2 cut(s) 309, 357
Eam1104I CTCTTC 2 cut(s) 62, 309
EarI CTCTTC 2 cut(s) 62, 309
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 58, 194, 290
EcoICRI GAGCTC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 98
FaiI YATR 8 cut(s) 57, 237, 279, 287, 292, 329, 362, 364
FaqI GGGAC 2 cut(s) 285, 362
FauNDI CATATG 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 38, 84
HapII CCGG 2 cut(s) 62, 134
HinfI GANTC 3 cut(s) 148, 166, 339
HpaII CCGG 2 cut(s) 62, 134
HphI GGTGA 2 cut(s) 76, 121
Hpy188I TCNGA 3 cut(s) 194, 203, 309
Hpy188III TCNNGA 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 94, 218, 268
HpyCH4III ACNGT 2 cut(s) 16, 109
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 291
HpyF3I CTNAG 1 cut(s) 26
Kzo9I GATC 2 cut(s) 309, 357
LguI GCTCTTC 2 cut(s) 62, 309
LmnI GCTCC 2 cut(s) 64, 136
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 39
MalI GATC 2 cut(s) 311, 359
MboI GATC 2 cut(s) 309, 357
MboII GAAGA 2 cut(s) 79, 296
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 51, 304
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 2 cut(s) 73, 239
MroXI GAANNNNTTC 1 cut(s) 71
MspI CCGG 2 cut(s) 62, 134
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 137, 291
NdeI CATATG 1 cut(s) 362
NdeII GATC 2 cut(s) 309, 357
NmeAIII GCCGAG 1 cut(s) 64
PciSI GCTCTTC 2 cut(s) 62, 309
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 166, 339
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 62, 309
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 309, 357
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 51, 304
SetI ASST 7 cut(s) 51, 74, 117, 133, 165, 210, 216
SfaNI GCATC 1 cut(s) 39
SsiI CCGC 1 cut(s) 294
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 16, 109
TaqI TCGA 1 cut(s) 51
TfiI GAWTC 2 cut(s) 166, 339
TseI GCWGC 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.