Rw0G004100

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00161
OG0022976
Physical Location & Seq
Forward (+)
17794 .. 18165
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004100.1

Sequence Viewer

Length: 372 bp
ATGGAAACACAAACACTTCCCAAGGCCGAGCCGGAACGCGACTATGCTCCGGTGAAGAGCTTCGGGGAGGGCCTGTCGGTTGGTTGGAAGGAGACGGTGAAGCTATGGAAAGTTGCAGCTCCGGTGGCTTGTACGACTCTTTTTCAGTACCTGATTCATTCCATCACCACCATCTTCATCGGCCATCTCGGAGATCTTCAGCTCTCTGCTATTTCCCTCGCTCATAATGTTATCAACACCATCGCCTTGGCTTCCTGGTTAGTTTGCATTTCTACCGGCTCAATCATTTGCTCTCATTGCTTTGTTTGTATATGCATTATGTCTATTTATTTATCTACGCATTATTGTTTGTATGTACTATGTATAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

6.16

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 41 - 96 7.9e-06 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022976)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026476
rosa_multiflora Rmu_sc0005268.1_g000006
rosa_samantha Rh1BG384400
rosa_wichuraiana Rw0G004100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 3 cut(s) 133, 149, 357
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 4 cut(s) 60, 103, 119, 202
AluI AGCT 4 cut(s) 60, 103, 119, 202
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 3 cut(s) 24, 70, 181
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 64, 109, 157
BbvI GCAGC 1 cut(s) 128
BccI CCATC 4 cut(s) 170, 179, 192, 248
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 86
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 21, 246
BsaWI WCCGGW 2 cut(s) 49, 121
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse118I RCCGGY 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 21, 246
BseMI GCAATG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 26, 72, 183
BsiSI CCGG 4 cut(s) 32, 50, 122, 276
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 3 cut(s) 26, 72, 183
Bsp143I GATC 1 cut(s) 193
BspANI GGCC 3 cut(s) 26, 72, 183
BspFNI CGCG 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 21, 246
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 21, 246
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 50
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 125, 297
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 3 cut(s) 26, 72, 183
BtgZI GCGATG 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 132, 148, 356
CviQI GTAC 3 cut(s) 132, 148, 356
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 21, 246
Eco57I CTGAAG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 21, 246
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 21, 246
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 9 cut(s) 45, 106, 225, 311, 313, 320, 354, 361, 365
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 3 cut(s) 26, 72, 183
HapII CCGG 4 cut(s) 32, 50, 122, 276
HinfI GANTC 2 cut(s) 136, 154
HpaII CCGG 4 cut(s) 32, 50, 122, 276
HphI GGTGA 3 cut(s) 64, 109, 157
Hpy188I TCNGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 116, 267, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 297
Kzo9I GATC 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 52, 124
LpnPI CCDG 8 cut(s) 45, 63, 86, 135, 164, 241, 268, 289
Lsp1109I GCAGC 1 cut(s) 128
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 67, 166, 188
MflI RGATCY 1 cut(s) 193
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 61, 227
Mph1103I ATGCAT 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 59
MspI CCGG 4 cut(s) 32, 50, 122, 276
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 125, 297
NdeII GATC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 133, 149, 357
RsaNI GTAC 3 cut(s) 132, 148, 356
SapI GCTCTTC 1 cut(s) 50
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 62, 105, 121, 153, 204
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 2 cut(s) 21, 246
TaaI ACNGT 1 cut(s) 97
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 154
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 146, 166
XmnI GAANNNNTTC 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.