Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0025405

Physical Location & Seq

Genomic Coordinates Forward (+)

58149735 .. 58150929

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGCAGCTTTGCCCCCAGCAGCAAAAGCTTAATCCATATTAGAGCGACCATGAAATCAACTCTCGCTCCTCTCTACCTTTTCTTATTTCAGCATATGGTCACGTTGATCATATCCAGAGAGTTGCGCCCTATATACACTACCACCGATGATATCGCTCTCAATTGTGGTTCCTTAGACAACCAGTCCAGTAGCATTGACAACCGAATTTGGACAGGAGATATCGACTCAAAACTTCACCCCCTAGAAGTACAACAAGTTGTTTATATGTCCCAAACCAGAAAAGCACCACCTCTTTCTTCCTCCGCCAGCCAAGTGCCATACACCACAGCACAGATTTCCTGCTTACAGCATTCCCCTAACTACAGGCCAAAAGTTCATTTGCTTGTATTTTTATCTTGTTTCCTATCCCAACTTCACCCGGTTAGATGCCCTCTTCTTTGTCACAGCCATCCAAGTAGGACAAGCTTGAATGCATACGCCTTTATCAATGGAATTGAAATTGTGTCAATGCCAACTAAACTTTGCTACTCTGTAGCTGCGAGTACTAGGGTCCAAGTCAATTATCACGTCAAAAATAGCACAGCTCTGGAGATGGTCTACCGAATCAACATCGGCGGATGCCAAGTTTTACCGAATGAAGACACTGGCATGTATCGGTATTGGGATGCCACTGATGAATCTTACTTGGATGATATGAGTAGAAAATACATCATTATACAGATGACCACAAGCATGCAACTCAAATTTGACAAAGTATCCAAATACATTGCGCTAGATATACGGAATGGGTCGTTCAATGGTGATGAACAAAACCATCAACAAGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

278

Amino Acids

31.4

Weight (kDa)

8.12

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025405)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030241
rosa_roxburghii	Rroxscaffold_4G00326100
rosa_rugosa	Rorug01G0040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	2 cut(s)	306, 618
AcsI	RAATTY	2 cut(s)	207, 746
AfaI	GTAC	2 cut(s)	252, 547
AgsI	TTSAA	3 cut(s)	472, 500, 799
AhdI	GACNNNNNGTC	1 cut(s)	184
AjiI	CACGTC	1 cut(s)	571
AluBI	AGCT	6 cut(s)	9, 30, 468, 539, 587, 829
AluI	AGCT	6 cut(s)	9, 30, 468, 539, 587, 829
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	6, 21, 539
ApoI	RAATTY	2 cut(s)	207, 746
AspLEI	GCGC	2 cut(s)	129, 775
AspS9I	GGNCC	1 cut(s)	553
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	230, 410, 815
AvaII	GGWCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	18, 33, 526
BccI	CCATC	3 cut(s)	459, 589, 825
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	3 cut(s)	245, 549, 776
BfmI	CTRYAG	2 cut(s)	364, 534
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	3 cut(s)	7, 22, 540
BlsI	GCNGC	3 cut(s)	8, 23, 541
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	553
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	2 cut(s)	172, 554
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	3 cut(s)	419, 611, 658
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse1I	ACTGG	3 cut(s)	184, 189, 652
Bse3DI	GCAATG	1 cut(s)	768
BseGI	GGATG	4 cut(s)	451, 626, 673, 697
BseMI	GCAATG	1 cut(s)	768
BseNI	ACTGG	3 cut(s)	184, 189, 652
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	18, 33, 526
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	352, 478
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	306, 618
BspANI	GGCC	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	172, 554
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	3 cut(s)	184, 189, 652
BssMI	GATC	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	310, 737
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	451, 626, 673, 697
BstHHI	GCGC	2 cut(s)	129, 775
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	655, 739
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	364, 534
BstV1I	GCAGC	3 cut(s)	18, 33, 526
BstV2I	GAAGAC	1 cut(s)	648
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	4 cut(s)	451, 626, 673, 697
BtsIMutI	CAGTG	2 cut(s)	645, 672
Cac8I	GCNNGC	2 cut(s)	310, 737
CfoI	GCGC	2 cut(s)	129, 775
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	251, 546
CviAII	CATG	3 cut(s)	52, 652, 736
CviJI	RGCY	9 cut(s)	9, 30, 312, 370, 450, 468, 539, 587, 829
CviKI_1	RGCY	9 cut(s)	9, 30, 312, 370, 450, 468, 539, 587, 829
CviQI	GTAC	2 cut(s)	251, 546
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	295, 633
Eco32I	GATATC	2 cut(s)	154, 223
Eco47I	GGWCC	1 cut(s)	553
EcoRV	GATATC	2 cut(s)	154, 223
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	3 cut(s)	55, 655, 739
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	3 cut(s)	51, 651, 735
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	7, 22, 540
FokI	GGATG	4 cut(s)	438, 633, 680, 704
Fsp4HI	GCNGC	3 cut(s)	7, 22, 540
FspBI	CTAG	3 cut(s)	245, 549, 776
GlaI	GCGC	2 cut(s)	128, 774
GluI	GCNGC	3 cut(s)	7, 22, 540
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	2 cut(s)	129, 775
Hin1II	CATG	3 cut(s)	55, 655, 739
Hin6I	GCGC	2 cut(s)	127, 773
HinP1I	GCGC	2 cut(s)	127, 773
HindIII	AAGCTT	2 cut(s)	28, 466
HinfI	GANTC	3 cut(s)	227, 606, 680
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	230, 410, 815
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188III	TCNNGA	2 cut(s)	117, 590
Hpy8I	GTNNAC	1 cut(s)	601
HpyCH4IV	ACGT	2 cut(s)	104, 570
HpyCH4V	TGCA	2 cut(s)	476, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	2 cut(s)	104, 570
Hsp92II	CATG	3 cut(s)	55, 655, 739
HspAI	GCGC	2 cut(s)	127, 773
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	3 cut(s)	18, 33, 526
LweI	GCATC	3 cut(s)	419, 611, 658
MaeI	CTAG	3 cut(s)	245, 549, 776
MaeII	ACGT	2 cut(s)	104, 570
MaeIII	GTNAC	2 cut(s)	100, 443
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	3 cut(s)	291, 428, 653
MfeI	CAATTG	1 cut(s)	163
MluCI	AATT	6 cut(s)	163, 207, 495, 501, 562, 746
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	81, 303, 313, 444
Mph1103I	ATGCAT	1 cut(s)	478
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	2 cut(s)	650, 734
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	163
Mva1269I	GAATGC	2 cut(s)	352, 478
MwoI	GCNNNNNNNGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	55, 655, 739
NlaIV	GGNNCC	2 cut(s)	172, 554
NmuCI	GTSAC	2 cut(s)	100, 443
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	655, 739
PaeI	GCATGC	1 cut(s)	739
PctI	GAATGC	2 cut(s)	352, 478
PfeI	GAWTC	2 cut(s)	606, 680
PkrI	GCNGC	3 cut(s)	8, 23, 541
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	172, 554
PspPI	GGNCC	1 cut(s)	553
RsaI	GTAC	2 cut(s)	252, 547
RsaNI	GTAC	2 cut(s)	251, 546
RseI	CAYNNNNRTG	2 cut(s)	650, 734
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	3 cut(s)	7, 22, 540
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	553
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	422
SfaNI	GCATC	3 cut(s)	419, 611, 658
SfcI	CTRYAG	2 cut(s)	364, 534
SinI	GGWCC	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	650, 734
SphI	GCATGC	1 cut(s)	739
Sse9I	AATT	6 cut(s)	163, 207, 495, 501, 562, 746
SsiI	CCGC	2 cut(s)	306, 618
SspMI	CTAG	3 cut(s)	245, 549, 776
StyD4I	CCNGG	1 cut(s)	420
TaiI	ACGT	2 cut(s)	107, 573
TaqI	TCGA	1 cut(s)	225
TasI	AATT	6 cut(s)	163, 207, 495, 501, 562, 746
TatI	WGTACW	2 cut(s)	250, 545
TfiI	GAWTC	2 cut(s)	606, 680
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	652, 679
TseFI	GTSAC	2 cut(s)	100, 443
TseI	GCWGC	3 cut(s)	6, 21, 539
Tsp45I	GTSAC	2 cut(s)	100, 443
TspDTI	ATGAA	5 cut(s)	68, 368, 654, 693, 822
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	2 cut(s)	652, 679
VpaK11BI	GGWCC	1 cut(s)	553
XapI	RAATTY	2 cut(s)	207, 746
XceI	RCATGY	2 cut(s)	655, 739
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	3 cut(s)	245, 549, 776
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.