Protein present in Fab1, YOTB, Vac1, and EEA1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Bromodomain | PF00439 | 63 - 110 | 2.8e-10 | Bromodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 299, 594 |
| AciI | CCGC | 3 cut(s) | 123, 594, 670 |
| AclWI | GGATC | 1 cut(s) | 216 |
| AcoI | YGGCCR | 2 cut(s) | 270, 339 |
| AcsI | RAATTY | 2 cut(s) | 696, 884 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 89, 279 |
| AflIII | ACRYGT | 2 cut(s) | 297, 981 |
| AgsI | TTSAA | 7 cut(s) | 405, 412, 710, 727, 755, 850, 866 |
| AjnI | CCWGG | 1 cut(s) | 341 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 876, 908 |
| AluBI | AGCT | 5 cut(s) | 76, 112, 139, 416, 658 |
| AluI | AGCT | 5 cut(s) | 76, 112, 139, 416, 658 |
| Alw21I | GWGCWC | 1 cut(s) | 660 |
| Alw26I | GTCTC | 2 cut(s) | 234, 450 |
| AlwI | GGATC | 1 cut(s) | 216 |
| AoxI | GGCC | 5 cut(s) | 200, 270, 339, 510, 595 |
| ApeKI | GCWGC | 1 cut(s) | 716 |
| ApoI | RAATTY | 2 cut(s) | 696, 884 |
| AspLEI | GCGC | 1 cut(s) | 594 |
| AsuHPI | GGTGA | 3 cut(s) | 53, 97, 140 |
| AsuII | TTCGAA | 2 cut(s) | 172, 196 |
| BalI | TGGCCA | 1 cut(s) | 341 |
| BanII | GRGCYC | 1 cut(s) | 660 |
| BbsI | GAAGAC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 1 cut(s) | 660 |
| BbvI | GCAGC | 1 cut(s) | 703 |
| BccI | CCATC | 1 cut(s) | 905 |
| BciT130I | CCWGG | 1 cut(s) | 343 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcoDI | GTCTC | 2 cut(s) | 234, 450 |
| BfaI | CTAG | 2 cut(s) | 396, 426 |
| BfmI | CTRYAG | 1 cut(s) | 558 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 269 |
| BglII | AGATCT | 1 cut(s) | 748 |
| BisI | GCNGC | 4 cut(s) | 124, 595, 671, 717 |
| BlsI | GCNGC | 4 cut(s) | 125, 596, 672, 718 |
| Bme1390I | CCNGG | 1 cut(s) | 343 |
| BmrFI | CCNGG | 1 cut(s) | 343 |
| BmsI | GCATC | 5 cut(s) | 69, 135, 250, 792, 849 |
| BpiI | GAAGAC | 1 cut(s) | 393 |
| BpmI | CTGGAG | 1 cut(s) | 235 |
| Bpu10I | CCTNAGC | 1 cut(s) | 674 |
| Bpu14I | TTCGAA | 2 cut(s) | 172, 196 |
| BpuEI | CTTGAG | 2 cut(s) | 746, 848 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 233, 263 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 89, 279 |
| Bse118I | RCCGGY | 1 cut(s) | 82 |
| Bse1I | ACTGG | 2 cut(s) | 252, 458 |
| Bse3DI | GCAATG | 1 cut(s) | 342 |
| BseBI | CCWGG | 1 cut(s) | 343 |
| BseGI | GGATG | 7 cut(s) | 40, 59, 521, 862, 886, 945, 975 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 89, 279 |
| BseMI | GCAATG | 1 cut(s) | 342 |
| BseMII | CTCAG | 1 cut(s) | 200 |
| BseNI | ACTGG | 2 cut(s) | 252, 458 |
| BseXI | GCAGC | 1 cut(s) | 703 |
| BsgI | GTGCAG | 2 cut(s) | 657, 793 |
| Bsh1236I | CGCG | 2 cut(s) | 299, 594 |
| BshFI | GGCC | 5 cut(s) | 202, 272, 341, 512, 597 |
| BsiHKAI | GWGCWC | 1 cut(s) | 660 |
| BsiSI | CCGG | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 89, 279 |
| BsmAI | GTCTC | 2 cut(s) | 234, 450 |
| BsnI | GGCC | 5 cut(s) | 202, 272, 341, 512, 597 |
| Bsp119I | TTCGAA | 2 cut(s) | 172, 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 660 |
| Bsp143I | GATC | 3 cut(s) | 145, 208, 748 |
| BspACI | CCGC | 3 cut(s) | 123, 594, 670 |
| BspANI | GGCC | 5 cut(s) | 202, 272, 341, 512, 597 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspFNI | CGCG | 2 cut(s) | 299, 594 |
| BspMAI | CTGCAG | 1 cut(s) | 562 |
| BspPI | GGATC | 1 cut(s) | 216 |
| BspT104I | TTCGAA | 2 cut(s) | 172, 196 |
| BsrDI | GCAATG | 1 cut(s) | 342 |
| BsrFI | RCCGGY | 1 cut(s) | 82 |
| BsrI | ACTGG | 2 cut(s) | 252, 458 |
| BssAI | RCCGGY | 1 cut(s) | 82 |
| BssMI | GATC | 3 cut(s) | 145, 208, 748 |
| Bst2UI | CCWGG | 1 cut(s) | 343 |
| Bst4CI | ACNGT | 2 cut(s) | 152, 220 |
| Bst6I | CTCTTC | 2 cut(s) | 705, 845 |
| BstBI | TTCGAA | 2 cut(s) | 172, 196 |
| BstC8I | GCNNGC | 2 cut(s) | 333, 721 |
| BstDEI | CTNAG | 3 cut(s) | 186, 369, 674 |
| BstF5I | GGATG | 7 cut(s) | 40, 59, 521, 862, 886, 945, 975 |
| BstFNI | CGCG | 2 cut(s) | 299, 594 |
| BstHHI | GCGC | 1 cut(s) | 594 |
| BstKTI | GATC | 3 cut(s) | 148, 211, 751 |
| BstMAI | GTCTC | 2 cut(s) | 234, 450 |
| BstMBI | GATC | 3 cut(s) | 145, 208, 748 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 269, 422, 780 |
| BstNI | CCWGG | 1 cut(s) | 343 |
| BstNSI | RCATGY | 1 cut(s) | 985 |
| BstSCI | CCNGG | 1 cut(s) | 341 |
| BstSFI | CTRYAG | 1 cut(s) | 558 |
| BstUI | CGCG | 2 cut(s) | 299, 594 |
| BstV1I | GCAGC | 1 cut(s) | 703 |
| BstV2I | GAAGAC | 1 cut(s) | 393 |
| BstX2I | RGATCY | 2 cut(s) | 208, 748 |
| BstYI | RGATCY | 2 cut(s) | 208, 748 |
| BsuRI | GGCC | 5 cut(s) | 202, 272, 341, 512, 597 |
| BtsCI | GGATG | 7 cut(s) | 40, 59, 521, 862, 886, 945, 975 |
| BtsI | GCAGTG | 3 cut(s) | 567, 645, 781 |
| BtsIMutI | CAGTG | 4 cut(s) | 465, 567, 645, 781 |
| Cac8I | GCNNGC | 2 cut(s) | 333, 721 |
| CfoI | GCGC | 1 cut(s) | 594 |
| Cfr10I | RCCGGY | 1 cut(s) | 82 |
| CseI | GACGC | 1 cut(s) | 288 |
| CviAII | CATG | 2 cut(s) | 303, 982 |
| DdeI | CTNAG | 3 cut(s) | 186, 369, 674 |
| DpnI | GATC | 3 cut(s) | 147, 210, 750 |
| DpnII | GATC | 3 cut(s) | 145, 208, 748 |
| EaeI | YGGCCR | 2 cut(s) | 270, 339 |
| Eam1104I | CTCTTC | 2 cut(s) | 705, 845 |
| EarI | CTCTTC | 2 cut(s) | 705, 845 |
| Ecl136II | GAGCTC | 1 cut(s) | 658 |
| Eco147I | AGGCCT | 1 cut(s) | 202 |
| Eco24I | GRGCYC | 1 cut(s) | 660 |
| Eco53kI | GAGCTC | 1 cut(s) | 658 |
| EcoICRI | GAGCTC | 1 cut(s) | 658 |
| EcoRII | CCWGG | 1 cut(s) | 341 |
| EcoT38I | GRGCYC | 1 cut(s) | 660 |
| FaeI | CATG | 2 cut(s) | 306, 985 |
| FaiI | YATR | 7 cut(s) | 206, 304, 651, 953, 955, 963, 983 |
| FatI | CATG | 2 cut(s) | 302, 981 |
| FauNDI | CATATG | 1 cut(s) | 953 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 4 cut(s) | 124, 595, 671, 717 |
| FokI | GGATG | 7 cut(s) | 46, 47, 508, 869, 893, 932, 962 |
| FriOI | GRGCYC | 1 cut(s) | 660 |
| Fsp4HI | GCNGC | 4 cut(s) | 124, 595, 671, 717 |
| FspBI | CTAG | 2 cut(s) | 396, 426 |
| GlaI | GCGC | 1 cut(s) | 593 |
| GluI | GCNGC | 4 cut(s) | 124, 595, 671, 717 |
| GsuI | CTGGAG | 1 cut(s) | 235 |
| HaeIII | GGCC | 5 cut(s) | 202, 272, 341, 512, 597 |
| HapII | CCGG | 1 cut(s) | 83 |
| HgaI | GACGC | 1 cut(s) | 288 |
| HhaI | GCGC | 1 cut(s) | 594 |
| Hin1II | CATG | 2 cut(s) | 306, 985 |
| Hin6I | GCGC | 1 cut(s) | 592 |
| HinP1I | GCGC | 1 cut(s) | 592 |
| HincII | GTYRAC | 2 cut(s) | 487, 822 |
| HindII | GTYRAC | 2 cut(s) | 487, 822 |
| HindIII | AAGCTT | 2 cut(s) | 110, 414 |
| HpaII | CCGG | 1 cut(s) | 83 |
| HphI | GGTGA | 3 cut(s) | 53, 97, 140 |
| Hpy166II | GTNNAC | 4 cut(s) | 216, 487, 822, 926 |
| Hpy188I | TCNGA | 1 cut(s) | 662 |
| Hpy188III | TCNNGA | 4 cut(s) | 188, 389, 525, 733 |
| Hpy8I | GTNNAC | 4 cut(s) | 216, 487, 822, 926 |
| HpyAV | CCTTC | 6 cut(s) | 15, 192, 298, 538, 599, 604 |
| HpyCH4III | ACNGT | 2 cut(s) | 152, 220 |
| HpyCH4V | TGCA | 5 cut(s) | 133, 335, 560, 638, 774 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 269, 422, 780 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 369, 674 |
| Hsp92II | CATG | 2 cut(s) | 306, 985 |
| HspAI | GCGC | 1 cut(s) | 592 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 3 cut(s) | 145, 208, 748 |
| LmnI | GCTCC | 4 cut(s) | 97, 136, 655, 663 |
| Lsp1109I | GCAGC | 1 cut(s) | 703 |
| LweI | GCATC | 5 cut(s) | 69, 135, 250, 792, 849 |
| MaeI | CTAG | 2 cut(s) | 396, 426 |
| MaeIII | GTNAC | 4 cut(s) | 41, 85, 308, 800 |
| MalI | GATC | 3 cut(s) | 147, 210, 750 |
| MboI | GATC | 3 cut(s) | 145, 208, 748 |
| MboII | GAAGA | 7 cut(s) | 393, 722, 743, 862, 878, 917, 920 |
| MflI | RGATCY | 2 cut(s) | 208, 748 |
| MhlI | GDGCHC | 1 cut(s) | 660 |
| MlsI | TGGCCA | 1 cut(s) | 341 |
| MluCI | AATT | 4 cut(s) | 141, 377, 696, 884 |
| MluI | ACGCGT | 1 cut(s) | 297 |
| MluNI | TGGCCA | 1 cut(s) | 341 |
| MlyI | GAGTC | 3 cut(s) | 340, 472, 931 |
| MmeI | TCCRAC | 1 cut(s) | 213 |
| Mox20I | TGGCCA | 1 cut(s) | 341 |
| MscI | TGGCCA | 1 cut(s) | 341 |
| MseI | TTAA | 2 cut(s) | 470, 477 |
| MslI | CAYNNNNRTG | 1 cut(s) | 980 |
| Msp20I | TGGCCA | 1 cut(s) | 341 |
| MspI | CCGG | 1 cut(s) | 83 |
| MspR9I | CCNGG | 1 cut(s) | 343 |
| MvaI | CCWGG | 1 cut(s) | 343 |
| MvnI | CGCG | 2 cut(s) | 299, 594 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 269, 422, 780 |
| NdeI | CATATG | 1 cut(s) | 953 |
| NdeII | GATC | 3 cut(s) | 145, 208, 748 |
| NlaIII | CATG | 2 cut(s) | 306, 985 |
| NmuCI | GTSAC | 2 cut(s) | 41, 85 |
| NspI | RCATGY | 1 cut(s) | 985 |
| NspV | TTCGAA | 2 cut(s) | 172, 196 |
| PceI | AGGCCT | 1 cut(s) | 202 |
| PciI | ACATGT | 1 cut(s) | 981 |
| PfeI | GAWTC | 7 cut(s) | 11, 174, 182, 585, 663, 736, 794 |
| PkrI | GCNGC | 4 cut(s) | 125, 596, 672, 718 |
| PleI | GAGTC | 3 cut(s) | 340, 471, 930 |
| PpsI | GAGTC | 3 cut(s) | 340, 471, 930 |
| PscI | ACATGT | 1 cut(s) | 981 |
| Psp124BI | GAGCTC | 1 cut(s) | 660 |
| Psp6I | CCWGG | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 341 |
| PstI | CTGCAG | 1 cut(s) | 562 |
| PsuI | RGATCY | 2 cut(s) | 208, 748 |
| RseI | CAYNNNNRTG | 1 cut(s) | 980 |
| SacI | GAGCTC | 1 cut(s) | 660 |
| SaqAI | TTAA | 2 cut(s) | 470, 477 |
| SatI | GCNGC | 4 cut(s) | 124, 595, 671, 717 |
| Sau3AI | GATC | 3 cut(s) | 145, 208, 748 |
| SchI | GAGTC | 3 cut(s) | 340, 472, 931 |
| ScrFI | CCNGG | 1 cut(s) | 343 |
| SduI | GDGCHC | 1 cut(s) | 660 |
| SfaNI | GCATC | 5 cut(s) | 69, 135, 250, 792, 849 |
| SfcI | CTRYAG | 1 cut(s) | 558 |
| SfuI | TTCGAA | 2 cut(s) | 172, 196 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 980 |
| SmlI | CTYRAG | 2 cut(s) | 761, 827 |
| SmoI | CTYRAG | 2 cut(s) | 761, 827 |
| Sse9I | AATT | 4 cut(s) | 141, 377, 696, 884 |
| SseBI | AGGCCT | 1 cut(s) | 202 |
| SsiI | CCGC | 3 cut(s) | 123, 594, 670 |
| SspI | AATATT | 1 cut(s) | 941 |
| SspMI | CTAG | 2 cut(s) | 396, 426 |
| SstI | GAGCTC | 1 cut(s) | 660 |
| StuI | AGGCCT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 1 cut(s) | 341 |
| TaaI | ACNGT | 2 cut(s) | 152, 220 |
| TaqI | TCGA | 3 cut(s) | 172, 196, 732 |
| TasI | AATT | 4 cut(s) | 141, 377, 696, 884 |
| TauI | GCSGC | 3 cut(s) | 126, 597, 673 |
| TfiI | GAWTC | 7 cut(s) | 11, 174, 182, 585, 663, 736, 794 |
| Tru1I | TTAA | 2 cut(s) | 470, 477 |
| Tru9I | TTAA | 2 cut(s) | 470, 477 |
| TscAI | CASTG | 4 cut(s) | 465, 567, 645, 781 |
| TseFI | GTSAC | 2 cut(s) | 41, 85 |
| TseI | GCWGC | 1 cut(s) | 716 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 85 |
| TspDTI | ATGAA | 3 cut(s) | 45, 873, 897 |
| TspRI | CASTG | 4 cut(s) | 465, 567, 645, 781 |
| XapI | RAATTY | 2 cut(s) | 696, 884 |
| XceI | RCATGY | 1 cut(s) | 985 |
| XspI | CTAG | 2 cut(s) | 396, 426 |