ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 118 - 238 | 1.9e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 311 |
| AciI | CCGC | 1 cut(s) | 679 |
| AcsI | RAATTY | 3 cut(s) | 76, 236, 644 |
| AfaI | GTAC | 1 cut(s) | 672 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 708 |
| AgsI | TTSAA | 4 cut(s) | 7, 256, 427, 721 |
| AjnI | CCWGG | 1 cut(s) | 53 |
| AluBI | AGCT | 1 cut(s) | 124 |
| AluI | AGCT | 1 cut(s) | 124 |
| Alw21I | GWGCWC | 1 cut(s) | 618 |
| AoxI | GGCC | 3 cut(s) | 249, 499, 755 |
| ApeKI | GCWGC | 2 cut(s) | 229, 554 |
| ApoI | RAATTY | 3 cut(s) | 76, 236, 644 |
| AseI | ATTAAT | 2 cut(s) | 327, 567 |
| AspA2I | CCTAGG | 1 cut(s) | 574 |
| AspS9I | GGNCC | 1 cut(s) | 755 |
| AsuHPI | GGTGA | 3 cut(s) | 25, 116, 560 |
| AvrII | CCTAGG | 1 cut(s) | 574 |
| Bbv12I | GWGCWC | 1 cut(s) | 618 |
| BbvI | GCAGC | 2 cut(s) | 241, 541 |
| BccI | CCATC | 5 cut(s) | 299, 350, 375, 385, 718 |
| BceAI | ACGGC | 2 cut(s) | 25, 116 |
| BciT130I | CCWGG | 1 cut(s) | 55 |
| BfaI | CTAG | 3 cut(s) | 111, 485, 575 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 763 |
| BisI | GCNGC | 3 cut(s) | 230, 555, 680 |
| BlnI | CCTAGG | 1 cut(s) | 574 |
| BlpI | GCTNAGC | 1 cut(s) | 96 |
| BlsI | GCNGC | 3 cut(s) | 231, 556, 681 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 1 cut(s) | 755 |
| BmiI | GGNNCC | 1 cut(s) | 767 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BmsI | GCATC | 3 cut(s) | 364, 541, 610 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 600, 632 |
| BpmI | CTGGAG | 3 cut(s) | 76, 140, 336 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 3 cut(s) | 26, 574, 761 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 387, 417 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 708 |
| Bse1I | ACTGG | 2 cut(s) | 123, 319 |
| BseBI | CCWGG | 1 cut(s) | 55 |
| BseDI | CCNNGG | 3 cut(s) | 26, 574, 761 |
| BseGI | GGATG | 4 cut(s) | 310, 379, 386, 396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 708 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 2 cut(s) | 123, 319 |
| BseRI | GAGGAG | 1 cut(s) | 624 |
| BseXI | GCAGC | 2 cut(s) | 241, 541 |
| BshFI | GGCC | 3 cut(s) | 251, 501, 757 |
| BsiHKAI | GWGCWC | 1 cut(s) | 618 |
| BslFI | GGGAC | 1 cut(s) | 600 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 708 |
| BsmFI | GGGAC | 1 cut(s) | 600 |
| BsnI | GGCC | 3 cut(s) | 251, 501, 757 |
| Bsp1286I | GDGCHC | 1 cut(s) | 618 |
| Bsp143I | GATC | 1 cut(s) | 298 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 96 |
| BspACI | CCGC | 1 cut(s) | 679 |
| BspANI | GGCC | 3 cut(s) | 251, 501, 757 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 767 |
| BsrI | ACTGG | 2 cut(s) | 123, 319 |
| BssECI | CCNNGG | 3 cut(s) | 26, 574, 761 |
| BssMI | GATC | 1 cut(s) | 298 |
| BssT1I | CCWWGG | 2 cut(s) | 574, 761 |
| Bst2UI | CCWGG | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 1 cut(s) | 677 |
| BstDEI | CTNAG | 1 cut(s) | 96 |
| BstDSI | CCRYGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 4 cut(s) | 310, 379, 386, 396 |
| BstKTI | GATC | 1 cut(s) | 301 |
| BstMBI | GATC | 1 cut(s) | 298 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 106, 763 |
| BstNI | CCWGG | 1 cut(s) | 55 |
| BstNSI | RCATGY | 1 cut(s) | 671 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstV1I | GCAGC | 2 cut(s) | 241, 541 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 752 |
| BsuRI | GGCC | 3 cut(s) | 251, 501, 757 |
| BtgI | CCRYGG | 1 cut(s) | 26 |
| BtsCI | GGATG | 4 cut(s) | 310, 379, 386, 396 |
| Cac8I | GCNNGC | 1 cut(s) | 677 |
| Cfr13I | GGNCC | 1 cut(s) | 755 |
| Csp6I | GTAC | 1 cut(s) | 671 |
| CviJI | RGCY | 9 cut(s) | 31, 95, 109, 124, 251, 362, 501, 757, 766 |
| CviKI_1 | RGCY | 9 cut(s) | 31, 95, 109, 124, 251, 362, 501, 757, 766 |
| CviQI | GTAC | 1 cut(s) | 671 |
| DdeI | CTNAG | 1 cut(s) | 96 |
| DpnI | GATC | 1 cut(s) | 300 |
| DpnII | GATC | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 2 cut(s) | 574, 761 |
| EcoRI | GAATTC | 1 cut(s) | 644 |
| EcoRII | CCWGG | 1 cut(s) | 53 |
| EcoT14I | CCWWGG | 2 cut(s) | 574, 761 |
| ErhI | CCWWGG | 2 cut(s) | 574, 761 |
| FaqI | GGGAC | 1 cut(s) | 600 |
| FblI | GTMKAC | 1 cut(s) | 311 |
| Fnu4HI | GCNGC | 3 cut(s) | 230, 555, 680 |
| FokI | GGATG | 4 cut(s) | 317, 386, 393, 403 |
| Fsp4HI | GCNGC | 3 cut(s) | 230, 555, 680 |
| FspBI | CTAG | 3 cut(s) | 111, 485, 575 |
| GluI | GCNGC | 3 cut(s) | 230, 555, 680 |
| GsuI | CTGGAG | 3 cut(s) | 76, 140, 336 |
| HaeIII | GGCC | 3 cut(s) | 251, 501, 757 |
| HincII | GTYRAC | 1 cut(s) | 529 |
| HindII | GTYRAC | 1 cut(s) | 529 |
| HinfI | GANTC | 2 cut(s) | 525, 541 |
| HphI | GGTGA | 3 cut(s) | 25, 116, 560 |
| Hpy166II | GTNNAC | 2 cut(s) | 312, 529 |
| Hpy188I | TCNGA | 2 cut(s) | 367, 711 |
| Hpy188III | TCNNGA | 1 cut(s) | 302 |
| Hpy8I | GTNNAC | 2 cut(s) | 312, 529 |
| Hpy99I | CGWCG | 1 cut(s) | 633 |
| HpyAV | CCTTC | 1 cut(s) | 148 |
| HpyCH4IV | ACGT | 1 cut(s) | 631 |
| HpyCH4V | TGCA | 6 cut(s) | 74, 332, 377, 440, 557, 730 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 106, 763 |
| HpyF3I | CTNAG | 1 cut(s) | 96 |
| HpySE526I | ACGT | 1 cut(s) | 631 |
| Kzo9I | GATC | 1 cut(s) | 298 |
| LmnI | GCTCC | 3 cut(s) | 121, 395, 771 |
| LpnPI | CCDG | 9 cut(s) | 40, 67, 104, 257, 273, 287, 300, 363, 689 |
| Lsp1109I | GCAGC | 2 cut(s) | 241, 541 |
| LweI | GCATC | 3 cut(s) | 364, 541, 610 |
| MaeI | CTAG | 3 cut(s) | 111, 485, 575 |
| MaeII | ACGT | 1 cut(s) | 631 |
| MaeIII | GTNAC | 3 cut(s) | 20, 599, 655 |
| MalI | GATC | 1 cut(s) | 300 |
| MboI | GATC | 1 cut(s) | 298 |
| MboII | GAAGA | 4 cut(s) | 193, 268, 308, 733 |
| MfeI | CAATTG | 1 cut(s) | 435 |
| MhlI | GDGCHC | 1 cut(s) | 618 |
| MluCI | AATT | 7 cut(s) | 76, 135, 236, 435, 506, 644, 690 |
| MlyI | GAGTC | 1 cut(s) | 534 |
| MnlI | CCTC | 9 cut(s) | 160, 209, 313, 472, 477, 602, 643, 742, 768 |
| MseI | TTAA | 5 cut(s) | 48, 327, 504, 567, 596 |
| MspA1I | CMGCKG | 1 cut(s) | 679 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MunI | CAATTG | 1 cut(s) | 435 |
| MvaI | CCWGG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 106, 763 |
| NdeII | GATC | 1 cut(s) | 298 |
| NlaIV | GGNNCC | 1 cut(s) | 767 |
| NmuCI | GTSAC | 2 cut(s) | 20, 599 |
| NspI | RCATGY | 1 cut(s) | 671 |
| PfeI | GAWTC | 1 cut(s) | 541 |
| PkrI | GCNGC | 3 cut(s) | 231, 556, 681 |
| PleI | GAGTC | 1 cut(s) | 533 |
| PpsI | GAGTC | 1 cut(s) | 533 |
| PshBI | ATTAAT | 2 cut(s) | 327, 567 |
| Psp6I | CCWGG | 1 cut(s) | 53 |
| PspGI | CCWGG | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 1 cut(s) | 767 |
| PspPI | GGNCC | 1 cut(s) | 755 |
| RsaI | GTAC | 1 cut(s) | 672 |
| RsaNI | GTAC | 1 cut(s) | 671 |
| SaqAI | TTAA | 5 cut(s) | 48, 327, 504, 567, 596 |
| SatI | GCNGC | 3 cut(s) | 230, 555, 680 |
| Sau3AI | GATC | 1 cut(s) | 298 |
| Sau96I | GGNCC | 1 cut(s) | 755 |
| SchI | GAGTC | 1 cut(s) | 534 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SduI | GDGCHC | 1 cut(s) | 618 |
| SfaNI | GCATC | 3 cut(s) | 364, 541, 610 |
| Sse9I | AATT | 7 cut(s) | 76, 135, 236, 435, 506, 644, 690 |
| SsiI | CCGC | 1 cut(s) | 679 |
| SspMI | CTAG | 3 cut(s) | 111, 485, 575 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| StyI | CCWWGG | 2 cut(s) | 574, 761 |
| TaiI | ACGT | 1 cut(s) | 634 |
| TaqI | TCGA | 3 cut(s) | 618, 628, 648 |
| TasI | AATT | 7 cut(s) | 76, 135, 236, 435, 506, 644, 690 |
| TauI | GCSGC | 1 cut(s) | 682 |
| TfiI | GAWTC | 1 cut(s) | 541 |
| Tru1I | TTAA | 5 cut(s) | 48, 327, 504, 567, 596 |
| Tru9I | TTAA | 5 cut(s) | 48, 327, 504, 567, 596 |
| TseFI | GTSAC | 2 cut(s) | 20, 599 |
| TseI | GCWGC | 2 cut(s) | 229, 554 |
| Tsp45I | GTSAC | 2 cut(s) | 20, 599 |
| TspDTI | ATGAA | 4 cut(s) | 164, 249, 356, 429 |
| TspGWI | ACGGA | 1 cut(s) | 546 |
| VspI | ATTAAT | 2 cut(s) | 327, 567 |
| XapI | RAATTY | 3 cut(s) | 76, 236, 644 |
| XceI | RCATGY | 1 cut(s) | 671 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 776 |
| XmaJI | CCTAGG | 1 cut(s) | 574 |
| XmiI | GTMKAC | 1 cut(s) | 311 |
| XspI | CTAG | 3 cut(s) | 111, 485, 575 |