Pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FBA_3 | PF08268 | 118 - 338 | 3e-10 | F-box associated beta propeller domain |
| b-prop_At3g26010-like | PF24750 | 120 - 309 | 6.3e-13 | F-box protein At3g26010-like, beta-propeller |
| Beta-prop_AT5G49610-like | PF23635 | 128 - 385 | 1.2e-06 | F-box protein AT5G49610-like, beta-propeller |
| FBA_1 | PF07734 | 130 - 371 | 2e-10 | F-box associated beta propeller domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 960 |
| Acc36I | ACCTGC | 1 cut(s) | 71 |
| AccB1I | GGYRCC | 2 cut(s) | 1204, 1297 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 773 |
| AccI | GTMKAC | 2 cut(s) | 7, 708 |
| AccII | CGCG | 1 cut(s) | 784 |
| AciI | CCGC | 3 cut(s) | 412, 1256, 1295 |
| AcoI | YGGCCR | 2 cut(s) | 409, 1226 |
| AcsI | RAATTY | 3 cut(s) | 107, 658, 1078 |
| AcuI | CTGAAG | 3 cut(s) | 278, 597, 1263 |
| AcvI | CACGTG | 1 cut(s) | 770 |
| AfaI | GTAC | 2 cut(s) | 242, 625 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 260, 773, 861, 1252, 1280 |
| AflIII | ACRYGT | 2 cut(s) | 769, 782 |
| AgsI | TTSAA | 5 cut(s) | 529, 657, 1003, 1133, 1147 |
| AjnI | CCWGG | 2 cut(s) | 674, 1313 |
| AluBI | AGCT | 6 cut(s) | 238, 308, 367, 1029, 1173, 1304 |
| AluI | AGCT | 6 cut(s) | 238, 308, 367, 1029, 1173, 1304 |
| Alw26I | GTCTC | 2 cut(s) | 596, 598 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 620 |
| AoxI | GGCC | 5 cut(s) | 409, 1226, 1271, 1282, 1307 |
| ApeKI | GCWGC | 3 cut(s) | 53, 97, 885 |
| ApoI | RAATTY | 3 cut(s) | 107, 658, 1078 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 635 |
| AspLEI | GCGC | 3 cut(s) | 270, 672, 961 |
| AspS9I | GGNCC | 1 cut(s) | 1166 |
| AsuHPI | GGTGA | 2 cut(s) | 332, 1162 |
| AvaII | GGWCC | 1 cut(s) | 1166 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 116, 149 |
| BalI | TGGCCA | 1 cut(s) | 1228 |
| BanI | GGYRCC | 2 cut(s) | 1204, 1297 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 971, 1003 |
| BbrPI | CACGTG | 1 cut(s) | 770 |
| BbsI | GAAGAC | 2 cut(s) | 339, 1084 |
| BbvCI | CCTCAGC | 2 cut(s) | 477, 516 |
| BbvI | GCAGC | 3 cut(s) | 40, 84, 897 |
| BccI | CCATC | 5 cut(s) | 186, 254, 605, 803, 854 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 950, 984 |
| BciT130I | CCWGG | 2 cut(s) | 676, 1315 |
| BclI | TGATCA | 1 cut(s) | 693 |
| BcoDI | GTCTC | 2 cut(s) | 596, 598 |
| BfaI | CTAG | 1 cut(s) | 1170 |
| BfuAI | ACCTGC | 1 cut(s) | 71 |
| BglII | AGATCT | 1 cut(s) | 1100 |
| BisI | GCNGC | 6 cut(s) | 54, 98, 412, 886, 1257, 1296 |
| BlsI | GCNGC | 6 cut(s) | 55, 99, 413, 887, 1258, 1297 |
| Bme1390I | CCNGG | 2 cut(s) | 676, 1315 |
| Bme18I | GGWCC | 1 cut(s) | 1166 |
| BmgT120I | GGNCC | 1 cut(s) | 1166 |
| BmiI | GGNNCC | 3 cut(s) | 440, 1206, 1299 |
| BmrFI | CCNGG | 2 cut(s) | 676, 1315 |
| BmsI | GCATC | 1 cut(s) | 255 |
| BpiI | GAAGAC | 2 cut(s) | 339, 1084 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 593, 625 |
| Bpu10I | CCTNAGC | 2 cut(s) | 477, 516 |
| BpuEI | CTTGAG | 1 cut(s) | 935 |
| BsaAI | YACGTR | 1 cut(s) | 770 |
| BsaJI | CCNNGG | 1 cut(s) | 674 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 578, 608 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 260, 773, 861, 1252, 1280 |
| Bse1I | ACTGG | 2 cut(s) | 625, 716 |
| Bse3DI | GCAATG | 2 cut(s) | 340, 961 |
| BseBI | CCWGG | 2 cut(s) | 676, 1315 |
| BseDI | CCNNGG | 1 cut(s) | 674 |
| BseGI | GGATG | 2 cut(s) | 72, 270 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 260, 773, 861, 1252, 1280 |
| BseMI | GCAATG | 2 cut(s) | 340, 961 |
| BseMII | CTCAG | 5 cut(s) | 273, 491, 507, 870, 1088 |
| BseNI | ACTGG | 2 cut(s) | 625, 716 |
| BseXI | GCAGC | 3 cut(s) | 40, 84, 897 |
| BsgI | GTGCAG | 1 cut(s) | 273 |
| Bsh1236I | CGCG | 1 cut(s) | 784 |
| BshFI | GGCC | 5 cut(s) | 411, 1228, 1273, 1284, 1309 |
| BshNI | GGYRCC | 2 cut(s) | 1204, 1297 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 260, 773, 861, 1252, 1280 |
| BsmAI | GTCTC | 2 cut(s) | 596, 598 |
| BsmI | GAATGC | 2 cut(s) | 506, 575 |
| BsnI | GGCC | 5 cut(s) | 411, 1228, 1273, 1284, 1309 |
| Bsp143I | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| BspACI | CCGC | 3 cut(s) | 412, 1256, 1295 |
| BspANI | GGCC | 5 cut(s) | 411, 1228, 1273, 1284, 1309 |
| BspCNI | CTCAG | 5 cut(s) | 274, 490, 508, 869, 1087 |
| BspFNI | CGCG | 1 cut(s) | 784 |
| BspLI | GGNNCC | 3 cut(s) | 440, 1206, 1299 |
| BspMI | ACCTGC | 1 cut(s) | 71 |
| BspQI | GCTCTTC | 1 cut(s) | 658 |
| BspT107I | GGYRCC | 2 cut(s) | 1204, 1297 |
| BsrDI | GCAATG | 2 cut(s) | 340, 961 |
| BsrI | ACTGG | 2 cut(s) | 625, 716 |
| BssECI | CCNNGG | 1 cut(s) | 674 |
| BssMI | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| BssNAI | GTATAC | 1 cut(s) | 709 |
| Bst1107I | GTATAC | 1 cut(s) | 709 |
| Bst2UI | CCWGG | 2 cut(s) | 676, 1315 |
| Bst4CI | ACNGT | 4 cut(s) | 592, 682, 691, 1166 |
| Bst6I | CTCTTC | 2 cut(s) | 616, 658 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1265 |
| BstBAI | YACGTR | 1 cut(s) | 770 |
| BstC8I | GCNNGC | 2 cut(s) | 288, 1037 |
| BstDEI | CTNAG | 6 cut(s) | 282, 477, 516, 856, 995, 1074 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| BstF5I | GGATG | 2 cut(s) | 72, 270 |
| BstFNI | CGCG | 1 cut(s) | 784 |
| BstHHI | GCGC | 3 cut(s) | 270, 672, 961 |
| BstKTI | GATC | 4 cut(s) | 176, 696, 1103, 1235 |
| BstMAI | GTCTC | 2 cut(s) | 596, 598 |
| BstMBI | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 512, 640, 894, 1265, 1301 |
| BstNI | CCWGG | 2 cut(s) | 676, 1315 |
| BstSCI | CCNGG | 2 cut(s) | 674, 1313 |
| BstUI | CGCG | 1 cut(s) | 784 |
| BstV1I | GCAGC | 3 cut(s) | 40, 84, 897 |
| BstV2I | GAAGAC | 2 cut(s) | 339, 1084 |
| BstX2I | RGATCY | 1 cut(s) | 1100 |
| BstYI | RGATCY | 1 cut(s) | 1100 |
| BstZ17I | GTATAC | 1 cut(s) | 709 |
| BsuRI | GGCC | 5 cut(s) | 411, 1228, 1273, 1284, 1309 |
| BtgZI | GCGATG | 2 cut(s) | 81, 496 |
| BtsCI | GGATG | 2 cut(s) | 72, 270 |
| BtsIMutI | CAGTG | 3 cut(s) | 588, 621, 687 |
| BveI | ACCTGC | 1 cut(s) | 71 |
| Cac8I | GCNNGC | 2 cut(s) | 288, 1037 |
| CaiI | CAGNNNCTG | 1 cut(s) | 620 |
| CfoI | GCGC | 3 cut(s) | 270, 672, 961 |
| Cfr13I | GGNCC | 1 cut(s) | 1166 |
| Csp6I | GTAC | 2 cut(s) | 241, 624 |
| CviAII | CATG | 6 cut(s) | 50, 185, 627, 898, 1247, 1286 |
| CviQI | GTAC | 2 cut(s) | 241, 624 |
| DdeI | CTNAG | 6 cut(s) | 282, 477, 516, 856, 995, 1074 |
| DpnI | GATC | 4 cut(s) | 175, 695, 1102, 1234 |
| DpnII | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| EaeI | YGGCCR | 2 cut(s) | 409, 1226 |
| Eam1104I | CTCTTC | 2 cut(s) | 616, 658 |
| EarI | CTCTTC | 2 cut(s) | 616, 658 |
| Eco32I | GATATC | 1 cut(s) | 1160 |
| Eco47I | GGWCC | 1 cut(s) | 1166 |
| Eco57I | CTGAAG | 3 cut(s) | 278, 597, 1263 |
| Eco72I | CACGTG | 1 cut(s) | 770 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| EcoRI | GAATTC | 1 cut(s) | 1078 |
| EcoRII | CCWGG | 2 cut(s) | 674, 1313 |
| EcoRV | GATATC | 1 cut(s) | 1160 |
| FaeI | CATG | 6 cut(s) | 53, 188, 630, 901, 1250, 1289 |
| FatI | CATG | 6 cut(s) | 49, 184, 626, 897, 1246, 1285 |
| FbaI | TGATCA | 1 cut(s) | 693 |
| FblI | GTMKAC | 2 cut(s) | 7, 708 |
| Fnu4HI | GCNGC | 6 cut(s) | 54, 98, 412, 886, 1257, 1296 |
| FokI | GGATG | 2 cut(s) | 59, 277 |
| Fsp4HI | GCNGC | 6 cut(s) | 54, 98, 412, 886, 1257, 1296 |
| FspBI | CTAG | 1 cut(s) | 1170 |
| FspI | TGCGCA | 1 cut(s) | 960 |
| GlaI | GCGC | 3 cut(s) | 269, 671, 960 |
| GluI | GCNGC | 6 cut(s) | 54, 98, 412, 886, 1257, 1296 |
| HaeIII | GGCC | 5 cut(s) | 411, 1228, 1273, 1284, 1309 |
| HhaI | GCGC | 3 cut(s) | 270, 672, 961 |
| Hin1II | CATG | 6 cut(s) | 53, 188, 630, 901, 1250, 1289 |
| Hin6I | GCGC | 3 cut(s) | 268, 670, 959 |
| HinP1I | GCGC | 3 cut(s) | 268, 670, 959 |
| HincII | GTYRAC | 2 cut(s) | 8, 586 |
| HindII | GTYRAC | 2 cut(s) | 8, 586 |
| HindIII | AAGCTT | 1 cut(s) | 1027 |
| HinfI | GANTC | 4 cut(s) | 4, 383, 851, 1153 |
| HpaI | GTTAAC | 1 cut(s) | 586 |
| HphI | GGTGA | 2 cut(s) | 332, 1162 |
| Hpy166II | GTNNAC | 4 cut(s) | 8, 202, 586, 709 |
| Hpy188I | TCNGA | 7 cut(s) | 119, 178, 283, 859, 882, 1077, 1084 |
| Hpy188III | TCNNGA | 5 cut(s) | 436, 470, 601, 914, 1104 |
| Hpy8I | GTNNAC | 4 cut(s) | 8, 202, 586, 709 |
| HpyAV | CCTTC | 8 cut(s) | 16, 311, 913, 1079, 1141, 1230, 1284, 1320 |
| HpyCH4III | ACNGT | 4 cut(s) | 592, 682, 691, 1166 |
| HpyCH4IV | ACGT | 2 cut(s) | 577, 769 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 512, 640, 894, 1265, 1301 |
| HpyF3I | CTNAG | 6 cut(s) | 282, 477, 516, 856, 995, 1074 |
| HpySE526I | ACGT | 2 cut(s) | 577, 769 |
| Hsp92II | CATG | 6 cut(s) | 53, 188, 630, 901, 1250, 1289 |
| HspAI | GCGC | 3 cut(s) | 268, 670, 959 |
| Ksp22I | TGATCA | 1 cut(s) | 693 |
| KspAI | GTTAAC | 1 cut(s) | 586 |
| Kzo9I | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| LguI | GCTCTTC | 1 cut(s) | 658 |
| Lsp1109I | GCAGC | 3 cut(s) | 40, 84, 897 |
| LweI | GCATC | 1 cut(s) | 255 |
| MaeI | CTAG | 1 cut(s) | 1170 |
| MaeII | ACGT | 2 cut(s) | 577, 769 |
| MaeIII | GTNAC | 1 cut(s) | 616 |
| MalI | GATC | 4 cut(s) | 175, 695, 1102, 1234 |
| MboI | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| MflI | RGATCY | 1 cut(s) | 1100 |
| MlsI | TGGCCA | 1 cut(s) | 1228 |
| MluCI | AATT | 5 cut(s) | 107, 562, 658, 800, 1078 |
| MluI | ACGCGT | 1 cut(s) | 782 |
| MluNI | TGGCCA | 1 cut(s) | 1228 |
| MlyI | GAGTC | 3 cut(s) | 13, 377, 860 |
| MmeI | TCCRAC | 3 cut(s) | 15, 487, 754 |
| MnlI | CCTC | 7 cut(s) | 132, 307, 486, 511, 574, 865, 1083 |
| Mox20I | TGGCCA | 1 cut(s) | 1228 |
| MroXI | GAANNNNTTC | 1 cut(s) | 635 |
| MscI | TGGCCA | 1 cut(s) | 1228 |
| MseI | TTAA | 3 cut(s) | 585, 741, 798 |
| Msp20I | TGGCCA | 1 cut(s) | 1228 |
| MspA1I | CMGCKG | 1 cut(s) | 238 |
| MspR9I | CCNGG | 2 cut(s) | 676, 1315 |
| Mva1269I | GAATGC | 2 cut(s) | 506, 575 |
| MvaI | CCWGG | 2 cut(s) | 676, 1315 |
| MvnI | CGCG | 1 cut(s) | 784 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 512, 640, 894, 1265, 1301 |
| NdeII | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| NlaIII | CATG | 6 cut(s) | 53, 188, 630, 901, 1250, 1289 |
| NlaIV | GGNNCC | 3 cut(s) | 440, 1206, 1299 |
| NmuCI | GTSAC | 1 cut(s) | 616 |
| NsbI | TGCGCA | 1 cut(s) | 960 |
| PciSI | GCTCTTC | 1 cut(s) | 658 |
| PctI | GAATGC | 2 cut(s) | 506, 575 |
| PdmI | GAANNNNTTC | 1 cut(s) | 635 |
| PfeI | GAWTC | 1 cut(s) | 1153 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 773 |
| PkrI | GCNGC | 6 cut(s) | 55, 99, 413, 887, 1258, 1297 |
| PleI | GAGTC | 3 cut(s) | 12, 377, 859 |
| PmaCI | CACGTG | 1 cut(s) | 770 |
| PmlI | CACGTG | 1 cut(s) | 770 |
| PpsI | GAGTC | 3 cut(s) | 12, 377, 859 |
| Ppu21I | YACGTR | 1 cut(s) | 770 |
| Psp6I | CCWGG | 2 cut(s) | 674, 1313 |
| PspCI | CACGTG | 1 cut(s) | 770 |
| PspGI | CCWGG | 2 cut(s) | 674, 1313 |
| PspN4I | GGNNCC | 3 cut(s) | 440, 1206, 1299 |
| PspPI | GGNCC | 1 cut(s) | 1166 |
| PstNI | CAGNNNCTG | 1 cut(s) | 620 |
| PsuI | RGATCY | 1 cut(s) | 1100 |
| PvuII | CAGCTG | 1 cut(s) | 238 |
| RsaI | GTAC | 2 cut(s) | 242, 625 |
| RsaNI | GTAC | 2 cut(s) | 241, 624 |
| SalI | GTCGAC | 1 cut(s) | 6 |
| SapI | GCTCTTC | 1 cut(s) | 658 |
| SaqAI | TTAA | 3 cut(s) | 585, 741, 798 |
| SatI | GCNGC | 6 cut(s) | 54, 98, 412, 886, 1257, 1296 |
| Sau3AI | GATC | 4 cut(s) | 173, 693, 1100, 1232 |
| Sau96I | GGNCC | 1 cut(s) | 1166 |
| SchI | GAGTC | 3 cut(s) | 13, 377, 860 |
| ScrFI | CCNGG | 2 cut(s) | 676, 1315 |
| SfaNI | GCATC | 1 cut(s) | 255 |
| SinI | GGWCC | 1 cut(s) | 1166 |
| SmlI | CTYRAG | 1 cut(s) | 914 |
| SmoI | CTYRAG | 1 cut(s) | 914 |
| Sse9I | AATT | 5 cut(s) | 107, 562, 658, 800, 1078 |
| SsiI | CCGC | 3 cut(s) | 412, 1256, 1295 |
| SspI | AATATT | 1 cut(s) | 1059 |
| SspMI | CTAG | 1 cut(s) | 1170 |
| StyD4I | CCNGG | 2 cut(s) | 674, 1313 |
| TaaI | ACNGT | 4 cut(s) | 592, 682, 691, 1166 |
| TaiI | ACGT | 2 cut(s) | 580, 772 |
| TaqI | TCGA | 5 cut(s) | 7, 172, 600, 1156, 1216 |
| TasI | AATT | 5 cut(s) | 107, 562, 658, 800, 1078 |
| TauI | GCSGC | 3 cut(s) | 414, 1259, 1298 |
| TfiI | GAWTC | 1 cut(s) | 1153 |
| Tru1I | TTAA | 3 cut(s) | 585, 741, 798 |
| Tru9I | TTAA | 3 cut(s) | 585, 741, 798 |
| TscAI | CASTG | 3 cut(s) | 595, 621, 687 |
| TseFI | GTSAC | 1 cut(s) | 616 |
| TseI | GCWGC | 3 cut(s) | 53, 97, 885 |
| Tsp45I | GTSAC | 1 cut(s) | 616 |
| TspDTI | ATGAA | 7 cut(s) | 38, 197, 367, 499, 1084, 1263, 1302 |
| TspRI | CASTG | 3 cut(s) | 595, 621, 687 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 773 |
| VpaK11BI | GGWCC | 1 cut(s) | 1166 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1278 |
| XapI | RAATTY | 3 cut(s) | 107, 658, 1078 |
| XmiI | GTMKAC | 2 cut(s) | 7, 708 |
| XmnI | GAANNNNTTC | 1 cut(s) | 635 |
| XspI | CTAG | 1 cut(s) | 1170 |