RchiOBHm_Chr1g0354891

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000072
Physical Location & Seq
Reverse (-)
47684120 .. 47685048
929 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58041

Sequence Viewer

Length: 894 bp
ATGCTCATGCAATCAGTGTTGGAGAGGGCGAATTTCTACTCCAGGTTAGCTTCGGTTCATTTTGTGAATTTCATCCAGTTTATTCAGGTAGCAATGGAAAGACTATCGGTGAATGAATTGATGTTCTTAATTGTCATGTTATGGGTCAATTGGAAGGAGCGAAATGAGGTTCTTCATGGTGGTGCTATTAGGCAGTCTGAGATCATTTTTAATGAGGCTTTCAATTTTTGGTCTGACTTAATTGCTTCCCAAACAAGGGCTGACTGCAGAAGTGAAGGCAGTGTTCTTCTGAATCAAAGGATAGAAAGACATATTGGGTGGCAGGTTCCACCTGATCACAGTTTGAAATTGAATTGTGATGCTTCTGTGATTCAAAATGGGAAGGGTGTGGGGGTTGGCGCTGTGCTACGTGCTGGTGATGGGAAGATGATTTGGGCACTGGGTCTCAGGGTGCAAGACCATCTTTCTCCGCTGGCTGCTGAATTGATAGCTCTTAAAGTTGGTCTTCAAGATGCCATGCTTTGTAGGCCTTGTTCTTTGATGGTGGAGACCGACTGCTTGGAGGCTGTGAGGCTTGTGGTGGAGCCTGGAGAGTGTTTGGCTGAGGTAGGTGTTTTAGTGGAAGAAGTAAGGAGTCTTCTGCTCGTGAGTCCTGCTCCTAGGATAGAGTTTGTTCCTAGAGAAGCAAATCAAGTTGCTCATTCAATTGCTAATTTTGTAGCCCGCGAGGTTGGGCGTTTTAAGTGGTTCGAAGTTGGGCCTCCTTGGCTCATGAAGGTTATTTCAAATGACCTACTTGTAACCTATAATGTTCCTGGGGTTGTGCGCGACTCATCAATCATTCGACCTGTGAATGAGGGTGGAGCTGCAGCTTGTCACACCCGTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

297

Amino Acids

33.06

Weight (kDa)

6.01

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 118 - 239 2e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 2 cut(s) 726, 828
AciI CCGC 2 cut(s) 470, 724
AcsI RAATTY 2 cut(s) 31, 67
AfiI CCNNNNNNNGG 2 cut(s) 255, 256
AgsI TTSAA 7 cut(s) 223, 346, 352, 374, 509, 705, 786
AjnI CCWGG 3 cut(s) 41, 586, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AleI CACNNNNGTG 1 cut(s) 882
AluBI AGCT 4 cut(s) 50, 491, 866, 872
AluI AGCT 4 cut(s) 50, 491, 866, 872
Alw26I GTCTC 2 cut(s) 449, 542
AoxI GGCC 2 cut(s) 527, 758
ApeKI GCWGC 3 cut(s) 476, 866, 869
ApoI RAATTY 2 cut(s) 31, 67
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 2 cut(s) 401, 828
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 2 cut(s) 121, 428
AsuII TTCGAA 1 cut(s) 750
AvrII CCTAGG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 621, 653
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 2 cut(s) 497, 629
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 3 cut(s) 463, 853, 881
BccI CCATC 3 cut(s) 413, 468, 535
BciT130I CCWGG 3 cut(s) 43, 588, 816
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 449, 542
BfaI CTAG 2 cut(s) 660, 678
BfmI CTRYAG 2 cut(s) 265, 867
BfoI RGCGCY 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 3 cut(s) 477, 867, 870
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 3 cut(s) 478, 868, 871
Bme1390I CCNGG 3 cut(s) 43, 588, 816
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 2 cut(s) 327, 585
BmrFI CCNGG 3 cut(s) 43, 588, 816
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 2 cut(s) 349, 502
BmuI ACTGGG 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 497, 629
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpmI CTGGAG 2 cut(s) 25, 609
Bpu10I CCTNAGC 1 cut(s) 603
Bpu14I TTCGAA 1 cut(s) 750
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 2 cut(s) 449, 542
BsaJI CCNNGG 3 cut(s) 659, 764, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 256
Bse1I ACTGG 2 cut(s) 76, 444
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 3 cut(s) 43, 588, 816
BseDI CCNNGG 3 cut(s) 659, 764, 815
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 255, 256
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 3 cut(s) 189, 460, 594
BseNI ACTGG 2 cut(s) 76, 444
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 3 cut(s) 463, 853, 881
Bsh1236I CGCG 2 cut(s) 726, 828
BshFI GGCC 2 cut(s) 529, 760
BslI CCNNNNNNNGG 2 cut(s) 255, 256
BsmAI GTCTC 2 cut(s) 449, 542
BsnI GGCC 2 cut(s) 529, 760
Bso31I GGTCTC 2 cut(s) 449, 542
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 201, 334
BspACI CCGC 2 cut(s) 470, 724
BspANI GGCC 2 cut(s) 529, 760
BspCNI CTCAG 3 cut(s) 190, 459, 595
BspFNI CGCG 2 cut(s) 726, 828
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 2 cut(s) 327, 585
BspMAI CTGCAG 2 cut(s) 269, 871
BspMI ACCTGC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 750
BspTNI GGTCTC 2 cut(s) 449, 542
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 2 cut(s) 76, 444
BssECI CCNNGG 3 cut(s) 659, 764, 815
BssMI GATC 2 cut(s) 201, 334
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 2 cut(s) 659, 764
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 3 cut(s) 43, 588, 816
Bst4CI ACNGT 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 474, 724
BstDEI CTNAG 3 cut(s) 198, 446, 603
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 2 cut(s) 726, 828
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 2 cut(s) 401, 828
BstKTI GATC 2 cut(s) 204, 337
BstMAI GTCTC 2 cut(s) 449, 542
BstMBI GATC 2 cut(s) 201, 334
BstMWI GCNNNNNNNGC 2 cut(s) 526, 766
BstNI CCWGG 3 cut(s) 43, 588, 816
BstSCI CCNGG 3 cut(s) 41, 586, 814
BstSFI CTRYAG 2 cut(s) 265, 867
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 2 cut(s) 726, 828
BstV1I GCAGC 3 cut(s) 463, 853, 881
BstV2I GAAGAC 2 cut(s) 497, 629
BsuRI GGCC 2 cut(s) 529, 760
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 3 cut(s) 21, 286, 437
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 474, 724
CciI TCATGA 1 cut(s) 771
CfoI GCGC 2 cut(s) 401, 828
Cfr13I GGNCC 1 cut(s) 758
CviAII CATG 5 cut(s) 7, 136, 176, 517, 772
DdeI CTNAG 3 cut(s) 198, 446, 603
DpnI GATC 2 cut(s) 203, 336
DpnII GATC 2 cut(s) 201, 334
Eco130I CCWWGG 2 cut(s) 659, 764
Eco147I AGGCCT 1 cut(s) 529
Eco31I GGTCTC 2 cut(s) 449, 542
EcoRII CCWGG 3 cut(s) 41, 586, 814
EcoT14I CCWWGG 2 cut(s) 659, 764
ErhI CCWWGG 2 cut(s) 659, 764
FaeI CATG 5 cut(s) 10, 139, 179, 520, 775
FaiI YATR 8 cut(s) 8, 137, 142, 177, 312, 518, 773, 807
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 489, 521
FatI CATG 5 cut(s) 6, 135, 175, 516, 771
FauI CCCGC 1 cut(s) 731
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 477, 867, 870
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 477, 867, 870
FspBI CTAG 2 cut(s) 660, 678
GlaI GCGC 2 cut(s) 400, 827
GluI GCNGC 3 cut(s) 477, 867, 870
GsuI CTGGAG 2 cut(s) 25, 609
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 2 cut(s) 529, 760
HhaI GCGC 2 cut(s) 401, 828
Hin1II CATG 5 cut(s) 10, 139, 179, 520, 775
Hin6I GCGC 2 cut(s) 399, 826
HinP1I GCGC 2 cut(s) 399, 826
HinfI GANTC 5 cut(s) 292, 370, 634, 649, 830
HphI GGTGA 2 cut(s) 121, 428
Hpy188I TCNGA 3 cut(s) 199, 235, 291
Hpy188III TCNNGA 3 cut(s) 509, 646, 772
HpyAV CCTTC 4 cut(s) 148, 269, 376, 769
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 10, 267, 454, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 766
HpyF3I CTNAG 3 cut(s) 198, 446, 603
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 5 cut(s) 10, 139, 179, 520, 775
HspAI GCGC 2 cut(s) 399, 826
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 201, 334
LmnI GCTCC 4 cut(s) 157, 583, 661, 863
Lsp1109I GCAGC 3 cut(s) 463, 853, 881
LweI GCATC 2 cut(s) 349, 502
MaeI CTAG 2 cut(s) 660, 678
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 2 cut(s) 799, 875
MalI GATC 2 cut(s) 203, 336
MboI GATC 2 cut(s) 201, 334
MboII GAAGA 6 cut(s) 164, 278, 436, 497, 629, 635
MfeI CAATTG 2 cut(s) 148, 705
MhlI GDGCHC 1 cut(s) 439
MlyI GAGTC 3 cut(s) 643, 658, 824
MnlI CCTC 9 cut(s) 18, 160, 208, 556, 564, 598, 721, 771, 850
MseI TTAA 5 cut(s) 128, 210, 239, 495, 741
MslI CAYNNNNRTG 2 cut(s) 180, 882
MspA1I CMGCKG 1 cut(s) 472
MspR9I CCNGG 3 cut(s) 43, 588, 816
MunI CAATTG 2 cut(s) 148, 705
MvaI CCWGG 3 cut(s) 43, 588, 816
MvnI CGCG 2 cut(s) 726, 828
MwoI GCNNNNNNNGC 2 cut(s) 526, 766
NdeII GATC 2 cut(s) 201, 334
NlaIII CATG 5 cut(s) 10, 139, 179, 520, 775
NlaIV GGNNCC 2 cut(s) 327, 585
NmuCI GTSAC 1 cut(s) 875
NspV TTCGAA 1 cut(s) 750
OliI CACNNNNGTG 1 cut(s) 882
PagI TCATGA 1 cut(s) 771
PceI AGGCCT 1 cut(s) 529
PfeI GAWTC 2 cut(s) 292, 370
PkrI GCNGC 3 cut(s) 478, 868, 871
PleI GAGTC 3 cut(s) 642, 657, 824
PpsI GAGTC 3 cut(s) 642, 657, 824
Ppu21I YACGTR 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 41, 586, 814
PspGI CCWGG 3 cut(s) 41, 586, 814
PspN4I GGNNCC 2 cut(s) 327, 585
PspPI GGNCC 1 cut(s) 758
PsrI GAACNNNNNNTAC 2 cut(s) 517, 549
PstI CTGCAG 2 cut(s) 269, 871
RseI CAYNNNNRTG 2 cut(s) 180, 882
SaqAI TTAA 5 cut(s) 128, 210, 239, 495, 741
SatI GCNGC 3 cut(s) 477, 867, 870
Sau3AI GATC 2 cut(s) 201, 334
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 3 cut(s) 643, 658, 824
ScrFI CCNGG 3 cut(s) 43, 588, 816
SduI GDGCHC 1 cut(s) 439
SfaNI GCATC 2 cut(s) 349, 502
SfcI CTRYAG 2 cut(s) 265, 867
SfuI TTCGAA 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 180, 882
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 2 cut(s) 470, 724
SspMI CTAG 2 cut(s) 660, 678
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 41, 586, 814
StyI CCWWGG 2 cut(s) 659, 764
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 412
TaqI TCGA 2 cut(s) 750, 844
TaqII GACCGA 1 cut(s) 566
TfiI GAWTC 2 cut(s) 292, 370
Tru1I TTAA 5 cut(s) 128, 210, 239, 495, 741
Tru9I TTAA 5 cut(s) 128, 210, 239, 495, 741
TscAI CASTG 3 cut(s) 21, 286, 444
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 3 cut(s) 476, 866, 869
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 5 cut(s) 47, 61, 129, 164, 788
TspRI CASTG 3 cut(s) 21, 286, 444
XapI RAATTY 2 cut(s) 31, 67
XmaJI CCTAGG 1 cut(s) 659
XspI CTAG 2 cut(s) 660, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.