Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 92 - 201 | 1.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 352 |
| AccII | CGCG | 1 cut(s) | 699 |
| AciI | CCGC | 2 cut(s) | 422, 699 |
| AcoI | YGGCCR | 1 cut(s) | 343 |
| AcsI | RAATTY | 2 cut(s) | 109, 502 |
| AfaI | GTAC | 3 cut(s) | 238, 266, 535 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 257, 352, 376, 377 |
| AgsI | TTSAA | 5 cut(s) | 114, 161, 215, 443, 587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 100, 132 |
| AleI | CACNNNNGTG | 1 cut(s) | 675 |
| AluBI | AGCT | 3 cut(s) | 167, 287, 491 |
| AluI | AGCT | 3 cut(s) | 167, 287, 491 |
| AoxI | GGCC | 1 cut(s) | 343 |
| ApeKI | GCWGC | 1 cut(s) | 194 |
| ApoI | RAATTY | 2 cut(s) | 109, 502 |
| AseI | ATTAAT | 1 cut(s) | 350 |
| AsuHPI | GGTGA | 2 cut(s) | 359, 662 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 525, 558 |
| BalI | TGGCCA | 1 cut(s) | 345 |
| BbsI | GAAGAC | 1 cut(s) | 552 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 2 cut(s) | 275, 647 |
| BfaI | CTAG | 1 cut(s) | 497 |
| BfmI | CTRYAG | 2 cut(s) | 252, 562 |
| BisI | GCNGC | 1 cut(s) | 195 |
| BlsI | GCNGC | 1 cut(s) | 196 |
| BmiI | GGNNCC | 1 cut(s) | 703 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 552 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 173, 205 |
| BpuEI | CTTGAG | 1 cut(s) | 674 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 257, 352, 376, 377 |
| Bse3DI | GCAATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 257, 352, 376, 377 |
| BseMI | GCAATG | 1 cut(s) | 340 |
| BseMII | CTCAG | 1 cut(s) | 516 |
| BseRI | GAGGAG | 2 cut(s) | 542, 599 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| Bsh1236I | CGCG | 1 cut(s) | 699 |
| BshFI | GGCC | 1 cut(s) | 345 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 257, 352, 376, 377 |
| BsmI | GAATGC | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 345 |
| Bsp1407I | TGTACA | 1 cut(s) | 236 |
| BspACI | CCGC | 2 cut(s) | 422, 699 |
| BspANI | GGCC | 1 cut(s) | 345 |
| BspCNI | CTCAG | 1 cut(s) | 517 |
| BspFNI | CGCG | 1 cut(s) | 699 |
| BspLI | GGNNCC | 1 cut(s) | 703 |
| BspMAI | CTGCAG | 1 cut(s) | 566 |
| BsrDI | GCAATG | 1 cut(s) | 340 |
| BsrGI | TGTACA | 1 cut(s) | 236 |
| Bst4CI | ACNGT | 6 cut(s) | 256, 302, 325, 479, 629, 677 |
| Bst6I | CTCTTC | 2 cut(s) | 304, 619 |
| BstAUI | TGTACA | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 1 cut(s) | 424 |
| BstDEI | CTNAG | 2 cut(s) | 525, 643 |
| BstFNI | CGCG | 1 cut(s) | 699 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSFI | CTRYAG | 2 cut(s) | 252, 562 |
| BstUI | CGCG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BstV2I | GAAGAC | 1 cut(s) | 552 |
| BsuRI | GGCC | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 3 cut(s) | 307, 413, 625 |
| Cac8I | GCNNGC | 1 cut(s) | 424 |
| Csp6I | GTAC | 3 cut(s) | 237, 265, 534 |
| CviAII | CATG | 5 cut(s) | 20, 122, 135, 240, 604 |
| CviJI | RGCY | 5 cut(s) | 167, 287, 345, 491, 659 |
| CviKI_1 | RGCY | 5 cut(s) | 167, 287, 345, 491, 659 |
| CviQI | GTAC | 3 cut(s) | 237, 265, 534 |
| DdeI | CTNAG | 2 cut(s) | 525, 643 |
| EaeI | YGGCCR | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 2 cut(s) | 304, 619 |
| EarI | CTCTTC | 2 cut(s) | 304, 619 |
| Eco32I | GATATC | 1 cut(s) | 466 |
| EcoRI | GAATTC | 1 cut(s) | 502 |
| EcoRV | GATATC | 1 cut(s) | 466 |
| FaeI | CATG | 5 cut(s) | 23, 125, 138, 243, 607 |
| FaiI | YATR | 9 cut(s) | 21, 123, 136, 204, 241, 605, 663, 665, 683 |
| FatI | CATG | 5 cut(s) | 19, 121, 134, 239, 603 |
| FauI | CCCGC | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 1 cut(s) | 195 |
| Fsp4HI | GCNGC | 1 cut(s) | 195 |
| FspBI | CTAG | 1 cut(s) | 497 |
| GluI | GCNGC | 1 cut(s) | 195 |
| HaeIII | GGCC | 1 cut(s) | 345 |
| Hin1II | CATG | 5 cut(s) | 23, 125, 138, 243, 607 |
| HincII | GTYRAC | 2 cut(s) | 246, 475 |
| HindII | GTYRAC | 2 cut(s) | 246, 475 |
| HinfI | GANTC | 2 cut(s) | 8, 556 |
| HphI | GGTGA | 2 cut(s) | 359, 662 |
| Hpy166II | GTNNAC | 3 cut(s) | 226, 246, 475 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 280, 526 |
| Hpy188III | TCNNGA | 4 cut(s) | 97, 440, 461, 553 |
| Hpy8I | GTNNAC | 3 cut(s) | 226, 246, 475 |
| HpyAV | CCTTC | 2 cut(s) | 26, 255 |
| HpyCH4III | ACNGT | 6 cut(s) | 256, 302, 325, 479, 629, 677 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 138, 197, 564, 600 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 2 cut(s) | 525, 643 |
| Hsp92II | CATG | 5 cut(s) | 23, 125, 138, 243, 607 |
| LmnI | GCTCC | 4 cut(s) | 284, 356, 612, 641 |
| LpnPI | CCDG | 2 cut(s) | 82, 604 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 1 cut(s) | 497 |
| MaeIII | GTNAC | 5 cut(s) | 380, 397, 566, 668, 677 |
| MboII | GAAGA | 5 cut(s) | 85, 321, 557, 606, 609 |
| MlsI | TGGCCA | 1 cut(s) | 345 |
| MluCI | AATT | 5 cut(s) | 109, 269, 347, 372, 502 |
| MluNI | TGGCCA | 1 cut(s) | 345 |
| MlyI | GAGTC | 1 cut(s) | 550 |
| MmeI | TCCRAC | 1 cut(s) | 238 |
| MnlI | CCTC | 8 cut(s) | 175, 305, 468, 520, 523, 620, 631, 649 |
| Mox20I | TGGCCA | 1 cut(s) | 345 |
| MscI | TGGCCA | 1 cut(s) | 345 |
| MseI | TTAA | 3 cut(s) | 272, 350, 715 |
| MslI | CAYNNNNRTG | 1 cut(s) | 675 |
| Msp20I | TGGCCA | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 1 cut(s) | 602 |
| MvnI | CGCG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NlaIII | CATG | 5 cut(s) | 23, 125, 138, 243, 607 |
| NlaIV | GGNNCC | 1 cut(s) | 703 |
| NmuCI | GTSAC | 3 cut(s) | 380, 668, 677 |
| NspI | RCATGY | 1 cut(s) | 607 |
| OliI | CACNNNNGTG | 1 cut(s) | 675 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 576 |
| PctI | GAATGC | 1 cut(s) | 602 |
| PfeI | GAWTC | 1 cut(s) | 8 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 352 |
| PkrI | GCNGC | 1 cut(s) | 196 |
| PleI | GAGTC | 1 cut(s) | 550 |
| PpsI | GAGTC | 1 cut(s) | 550 |
| PshBI | ATTAAT | 1 cut(s) | 350 |
| PspN4I | GGNNCC | 1 cut(s) | 703 |
| PstI | CTGCAG | 1 cut(s) | 566 |
| RsaI | GTAC | 3 cut(s) | 238, 266, 535 |
| RsaNI | GTAC | 3 cut(s) | 237, 265, 534 |
| RseI | CAYNNNNRTG | 1 cut(s) | 675 |
| SaqAI | TTAA | 3 cut(s) | 272, 350, 715 |
| SatI | GCNGC | 1 cut(s) | 195 |
| SchI | GAGTC | 1 cut(s) | 550 |
| SetI | ASST | 6 cut(s) | 132, 169, 266, 289, 493, 579 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 2 cut(s) | 252, 562 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 675 |
| SmlI | CTYRAG | 1 cut(s) | 653 |
| SmoI | CTYRAG | 1 cut(s) | 653 |
| Sse9I | AATT | 5 cut(s) | 109, 269, 347, 372, 502 |
| SsiI | CCGC | 2 cut(s) | 422, 699 |
| SspMI | CTAG | 1 cut(s) | 497 |
| TaaI | ACNGT | 6 cut(s) | 256, 302, 325, 479, 629, 677 |
| TaqI | TCGA | 1 cut(s) | 468 |
| TasI | AATT | 5 cut(s) | 109, 269, 347, 372, 502 |
| TatI | WGTACW | 1 cut(s) | 236 |
| TfiI | GAWTC | 1 cut(s) | 8 |
| Tru1I | TTAA | 3 cut(s) | 272, 350, 715 |
| Tru9I | TTAA | 3 cut(s) | 272, 350, 715 |
| TscAI | CASTG | 3 cut(s) | 307, 420, 632 |
| TseFI | GTSAC | 3 cut(s) | 380, 668, 677 |
| TseI | GCWGC | 1 cut(s) | 194 |
| Tsp45I | GTSAC | 3 cut(s) | 380, 668, 677 |
| TspDTI | ATGAA | 2 cut(s) | 8, 117 |
| TspRI | CASTG | 3 cut(s) | 307, 420, 632 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 352 |
| VspI | ATTAAT | 1 cut(s) | 350 |
| XapI | RAATTY | 2 cut(s) | 109, 502 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XspI | CTAG | 1 cut(s) | 497 |