ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 89 - 210 | 4.5e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AccI | GTMKAC | 1 cut(s) | 427 |
| AciI | CCGC | 1 cut(s) | 467 |
| AcsI | RAATTY | 1 cut(s) | 140 |
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AfaI | GTAC | 2 cut(s) | 263, 501 |
| AflIII | ACRYGT | 1 cut(s) | 580 |
| AgsI | TTSAA | 1 cut(s) | 634 |
| AjnI | CCWGG | 1 cut(s) | 572 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 542, 574, 699, 731 |
| AluBI | AGCT | 4 cut(s) | 337, 368, 395, 710 |
| AluI | AGCT | 4 cut(s) | 337, 368, 395, 710 |
| AoxI | GGCC | 2 cut(s) | 91, 668 |
| ApaI | GGGCCC | 1 cut(s) | 672 |
| ApeKI | GCWGC | 2 cut(s) | 205, 251 |
| ApoI | RAATTY | 1 cut(s) | 140 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 369 |
| AspA2I | CCTAGG | 1 cut(s) | 101 |
| AspLEI | GCGC | 1 cut(s) | 594 |
| AspS9I | GGNCC | 3 cut(s) | 640, 668, 669 |
| AvaII | GGWCC | 1 cut(s) | 640 |
| AvrII | CCTAGG | 1 cut(s) | 101 |
| BaeGI | GKGCMC | 1 cut(s) | 672 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| BanII | GRGCYC | 1 cut(s) | 672 |
| BbvI | GCAGC | 2 cut(s) | 217, 238 |
| BccI | CCATC | 4 cut(s) | 172, 263, 334, 631 |
| BciT130I | CCWGG | 1 cut(s) | 574 |
| BclI | TGATCA | 1 cut(s) | 477 |
| BfaI | CTAG | 2 cut(s) | 102, 711 |
| BfmI | CTRYAG | 2 cut(s) | 173, 312 |
| BfoI | RGCGCY | 1 cut(s) | 595 |
| BisI | GCNGC | 2 cut(s) | 206, 252 |
| BlnI | CCTAGG | 1 cut(s) | 101 |
| BlsI | GCNGC | 2 cut(s) | 207, 253 |
| Bme1390I | CCNGG | 1 cut(s) | 574 |
| Bme18I | GGWCC | 1 cut(s) | 640 |
| BmgT120I | GGNCC | 3 cut(s) | 640, 668, 669 |
| BmiI | GGNNCC | 4 cut(s) | 346, 357, 670, 671 |
| BmrFI | CCNGG | 1 cut(s) | 574 |
| BmsI | GCATC | 2 cut(s) | 454, 523 |
| BpmI | CTGGAG | 1 cut(s) | 168 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 2 cut(s) | 101, 673 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 220, 250, 453, 483 |
| Bse1I | ACTGG | 1 cut(s) | 643 |
| BseBI | CCWGG | 1 cut(s) | 574 |
| BseDI | CCNNGG | 2 cut(s) | 101, 673 |
| BseGI | GGATG | 2 cut(s) | 420, 538 |
| BseNI | ACTGG | 1 cut(s) | 643 |
| BseSI | GKGCMC | 1 cut(s) | 672 |
| BseXI | GCAGC | 2 cut(s) | 217, 238 |
| BsgI | GTGCAG | 1 cut(s) | 224 |
| BshFI | GGCC | 2 cut(s) | 93, 670 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BsmI | GAATGC | 1 cut(s) | 556 |
| BsnI | GGCC | 2 cut(s) | 93, 670 |
| Bsp120I | GGGCCC | 1 cut(s) | 668 |
| Bsp1286I | GDGCHC | 1 cut(s) | 672 |
| Bsp143I | GATC | 1 cut(s) | 477 |
| Bsp19I | CCATGG | 1 cut(s) | 673 |
| BspACI | CCGC | 1 cut(s) | 467 |
| BspANI | GGCC | 2 cut(s) | 93, 670 |
| BspHI | TCATGA | 1 cut(s) | 681 |
| BspLI | GGNNCC | 4 cut(s) | 346, 357, 670, 671 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BsrI | ACTGG | 1 cut(s) | 643 |
| BssECI | CCNNGG | 2 cut(s) | 101, 673 |
| BssMI | GATC | 1 cut(s) | 477 |
| BssT1I | CCWWGG | 2 cut(s) | 101, 673 |
| Bst2UI | CCWGG | 1 cut(s) | 574 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 464 |
| BstC8I | GCNNGC | 1 cut(s) | 249 |
| BstDSI | CCRYGG | 1 cut(s) | 673 |
| BstF5I | GGATG | 2 cut(s) | 420, 538 |
| BstH2I | RGCGCY | 1 cut(s) | 595 |
| BstHHI | GCGC | 1 cut(s) | 594 |
| BstKTI | GATC | 1 cut(s) | 480 |
| BstMBI | GATC | 1 cut(s) | 477 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 464, 626 |
| BstNI | CCWGG | 1 cut(s) | 574 |
| BstNSI | RCATGY | 2 cut(s) | 584, 629 |
| BstSCI | CCNGG | 1 cut(s) | 572 |
| BstSFI | CTRYAG | 2 cut(s) | 173, 312 |
| BstSLI | GKGCMC | 1 cut(s) | 672 |
| BstV1I | GCAGC | 2 cut(s) | 217, 238 |
| BsuRI | GGCC | 2 cut(s) | 93, 670 |
| BtgI | CCRYGG | 1 cut(s) | 673 |
| BtsCI | GGATG | 2 cut(s) | 420, 538 |
| Cac8I | GCNNGC | 1 cut(s) | 249 |
| CciI | TCATGA | 1 cut(s) | 681 |
| CfoI | GCGC | 1 cut(s) | 594 |
| Cfr13I | GGNCC | 3 cut(s) | 640, 668, 669 |
| Csp6I | GTAC | 2 cut(s) | 262, 500 |
| CviAII | CATG | 8 cut(s) | 80, 137, 215, 410, 581, 626, 674, 682 |
| CviQI | GTAC | 2 cut(s) | 262, 500 |
| DpnI | GATC | 1 cut(s) | 479 |
| DpnII | GATC | 1 cut(s) | 477 |
| Eco130I | CCWWGG | 2 cut(s) | 101, 673 |
| Eco147I | AGGCCT | 1 cut(s) | 93 |
| Eco24I | GRGCYC | 1 cut(s) | 672 |
| Eco47I | GGWCC | 1 cut(s) | 640 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| EcoO109I | RGGNCCY | 2 cut(s) | 668, 669 |
| EcoRII | CCWGG | 1 cut(s) | 572 |
| EcoT14I | CCWWGG | 2 cut(s) | 101, 673 |
| EcoT38I | GRGCYC | 1 cut(s) | 672 |
| ErhI | CCWWGG | 2 cut(s) | 101, 673 |
| FaeI | CATG | 8 cut(s) | 83, 140, 218, 413, 584, 629, 677, 685 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 699, 731 |
| FatI | CATG | 8 cut(s) | 79, 136, 214, 409, 580, 625, 673, 681 |
| FbaI | TGATCA | 1 cut(s) | 477 |
| FblI | GTMKAC | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 2 cut(s) | 206, 252 |
| FokI | GGATG | 2 cut(s) | 427, 545 |
| FriOI | GRGCYC | 1 cut(s) | 672 |
| Fsp4HI | GCNGC | 2 cut(s) | 206, 252 |
| FspBI | CTAG | 2 cut(s) | 102, 711 |
| GlaI | GCGC | 1 cut(s) | 593 |
| GluI | GCNGC | 2 cut(s) | 206, 252 |
| GsuI | CTGGAG | 1 cut(s) | 168 |
| HaeII | RGCGCY | 1 cut(s) | 595 |
| HaeIII | GGCC | 2 cut(s) | 93, 670 |
| HhaI | GCGC | 1 cut(s) | 594 |
| Hin1II | CATG | 8 cut(s) | 83, 140, 218, 413, 584, 629, 677, 685 |
| Hin6I | GCGC | 1 cut(s) | 592 |
| HinP1I | GCGC | 1 cut(s) | 592 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 1 cut(s) | 662 |
| Hpy166II | GTNNAC | 1 cut(s) | 428 |
| Hpy188III | TCNNGA | 2 cut(s) | 147, 682 |
| Hpy8I | GTNNAC | 1 cut(s) | 428 |
| HpyAV | CCTTC | 2 cut(s) | 52, 156 |
| HpyCH4V | TGCA | 5 cut(s) | 205, 458, 485, 536, 554 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 464, 626 |
| Hsp92II | CATG | 8 cut(s) | 83, 140, 218, 413, 584, 629, 677, 685 |
| HspAI | GCGC | 1 cut(s) | 592 |
| Ksp22I | TGATCA | 1 cut(s) | 477 |
| Kzo9I | GATC | 1 cut(s) | 477 |
| LmnI | GCTCC | 2 cut(s) | 334, 344 |
| Lsp1109I | GCAGC | 2 cut(s) | 217, 238 |
| LweI | GCATC | 2 cut(s) | 454, 523 |
| MaeI | CTAG | 2 cut(s) | 102, 711 |
| MaeIII | GTNAC | 1 cut(s) | 439 |
| MalI | GATC | 1 cut(s) | 479 |
| MboI | GATC | 1 cut(s) | 477 |
| MboII | GAAGA | 1 cut(s) | 646 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MhlI | GDGCHC | 1 cut(s) | 672 |
| MluCI | AATT | 5 cut(s) | 26, 140, 419, 486, 525 |
| MmeI | TCCRAC | 1 cut(s) | 540 |
| MnlI | CCTC | 3 cut(s) | 64, 176, 214 |
| MroXI | GAANNNNTTC | 1 cut(s) | 369 |
| MseI | TTAA | 1 cut(s) | 320 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MspR9I | CCNGG | 1 cut(s) | 574 |
| MunI | CAATTG | 1 cut(s) | 486 |
| Mva1269I | GAATGC | 1 cut(s) | 556 |
| MvaI | CCWGG | 1 cut(s) | 574 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 464, 626 |
| NcoI | CCATGG | 1 cut(s) | 673 |
| NdeII | GATC | 1 cut(s) | 477 |
| NlaIII | CATG | 8 cut(s) | 83, 140, 218, 413, 584, 629, 677, 685 |
| NlaIV | GGNNCC | 4 cut(s) | 346, 357, 670, 671 |
| NspI | RCATGY | 2 cut(s) | 584, 629 |
| PagI | TCATGA | 1 cut(s) | 681 |
| PceI | AGGCCT | 1 cut(s) | 93 |
| PciI | ACATGT | 1 cut(s) | 580 |
| PctI | GAATGC | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 369 |
| PfeI | GAWTC | 1 cut(s) | 662 |
| PfoI | TCCNGGA | 1 cut(s) | 572 |
| PkrI | GCNGC | 2 cut(s) | 207, 253 |
| PscI | ACATGT | 1 cut(s) | 580 |
| Psp6I | CCWGG | 1 cut(s) | 572 |
| PspGI | CCWGG | 1 cut(s) | 572 |
| PspN4I | GGNNCC | 4 cut(s) | 346, 357, 670, 671 |
| PspOMI | GGGCCC | 1 cut(s) | 668 |
| PspPI | GGNCC | 3 cut(s) | 640, 668, 669 |
| RsaI | GTAC | 2 cut(s) | 263, 501 |
| RsaNI | GTAC | 2 cut(s) | 262, 500 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SaqAI | TTAA | 1 cut(s) | 320 |
| SatI | GCNGC | 2 cut(s) | 206, 252 |
| Sau3AI | GATC | 1 cut(s) | 477 |
| Sau96I | GGNCC | 3 cut(s) | 640, 668, 669 |
| ScrFI | CCNGG | 1 cut(s) | 574 |
| SduI | GDGCHC | 1 cut(s) | 672 |
| SetI | ASST | 6 cut(s) | 75, 225, 339, 370, 397, 712 |
| SfaNI | GCATC | 2 cut(s) | 454, 523 |
| SfcI | CTRYAG | 2 cut(s) | 173, 312 |
| SinI | GGWCC | 1 cut(s) | 640 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 5 cut(s) | 26, 140, 419, 486, 525 |
| SseBI | AGGCCT | 1 cut(s) | 93 |
| SsiI | CCGC | 1 cut(s) | 467 |
| SspI | AATATT | 1 cut(s) | 295 |
| SspMI | CTAG | 2 cut(s) | 102, 711 |
| StuI | AGGCCT | 1 cut(s) | 93 |
| StyD4I | CCNGG | 1 cut(s) | 572 |
| StyI | CCWWGG | 2 cut(s) | 101, 673 |
| TaqI | TCGA | 2 cut(s) | 390, 622 |
| TasI | AATT | 5 cut(s) | 26, 140, 419, 486, 525 |
| TatI | WGTACW | 2 cut(s) | 261, 499 |
| TfiI | GAWTC | 1 cut(s) | 662 |
| Tru1I | TTAA | 1 cut(s) | 320 |
| Tru9I | TTAA | 1 cut(s) | 320 |
| TseI | GCWGC | 2 cut(s) | 205, 251 |
| TspDTI | ATGAA | 6 cut(s) | 68, 153, 431, 563, 670, 698 |
| VpaK11BI | GGWCC | 1 cut(s) | 640 |
| XapI | RAATTY | 1 cut(s) | 140 |
| XceI | RCATGY | 2 cut(s) | 584, 629 |
| XmaJI | CCTAGG | 1 cut(s) | 101 |
| XmiI | GTMKAC | 1 cut(s) | 427 |
| XmnI | GAANNNNTTC | 1 cut(s) | 369 |
| XspI | CTAG | 2 cut(s) | 102, 711 |