ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 60 - 181 | 2.8e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 213 |
| AbsI | CCTCGAGG | 1 cut(s) | 461 |
| AcsI | RAATTY | 1 cut(s) | 83 |
| AdeI | CACNNNGTG | 1 cut(s) | 157 |
| AfaI | GTAC | 1 cut(s) | 40 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 15, 72, 160, 466 |
| AgsI | TTSAA | 6 cut(s) | 23, 53, 89, 253, 296, 371 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 131, 163 |
| AluBI | AGCT | 5 cut(s) | 437, 500, 521, 542, 578 |
| AluI | AGCT | 5 cut(s) | 437, 500, 521, 542, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 262 |
| Alw26I | GTCTC | 1 cut(s) | 172 |
| Alw44I | GTGCAC | 1 cut(s) | 258 |
| Ama87I | CYCGRG | 1 cut(s) | 461 |
| AoxI | GGCC | 1 cut(s) | 581 |
| ApaLI | GTGCAC | 1 cut(s) | 258 |
| ApeKI | GCWGC | 2 cut(s) | 507, 518 |
| ApoI | RAATTY | 1 cut(s) | 83 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AspS9I | GGNCC | 1 cut(s) | 581 |
| AvaI | CYCGRG | 1 cut(s) | 461 |
| BaeGI | GKGCMC | 1 cut(s) | 262 |
| BanII | GRGCYC | 1 cut(s) | 100 |
| Bbv12I | GWGCWC | 1 cut(s) | 262 |
| BbvI | GCAGC | 2 cut(s) | 519, 530 |
| BccI | CCATC | 5 cut(s) | 20, 50, 137, 272, 407 |
| BcoDI | GTCTC | 1 cut(s) | 172 |
| BfaI | CTAG | 3 cut(s) | 155, 477, 501 |
| BisI | GCNGC | 2 cut(s) | 508, 519 |
| BlsI | GCNGC | 2 cut(s) | 509, 520 |
| BmeT110I | CYCGRG | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 1 cut(s) | 581 |
| BmiI | GGNNCC | 1 cut(s) | 148 |
| BmsI | GCATC | 2 cut(s) | 367, 446 |
| BsaJI | CCNNGG | 3 cut(s) | 42, 309, 534 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 15, 72, 160, 466 |
| Bse3DI | GCAATG | 1 cut(s) | 559 |
| BseDI | CCNNGG | 3 cut(s) | 42, 309, 534 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 15, 72, 160, 466 |
| BseMI | GCAATG | 1 cut(s) | 559 |
| BseMII | CTCAG | 1 cut(s) | 212 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseSI | GKGCMC | 1 cut(s) | 262 |
| BseXI | GCAGC | 2 cut(s) | 519, 530 |
| BseYI | CCCAGC | 1 cut(s) | 578 |
| BsgI | GTGCAG | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 583 |
| BsiHKAI | GWGCWC | 1 cut(s) | 262 |
| BsiHKCI | CYCGRG | 1 cut(s) | 461 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 15, 72, 160, 466 |
| BsmAI | GTCTC | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 461 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 262 |
| BspANI | GGCC | 1 cut(s) | 583 |
| BspCNI | CTCAG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 148 |
| BspQI | GCTCTTC | 1 cut(s) | 105 |
| BsrDI | GCAATG | 1 cut(s) | 559 |
| BssECI | CCNNGG | 3 cut(s) | 42, 309, 534 |
| BssT1I | CCWWGG | 2 cut(s) | 309, 534 |
| Bst4CI | ACNGT | 2 cut(s) | 43, 407 |
| Bst6I | CTCTTC | 2 cut(s) | 105, 125 |
| BstDEI | CTNAG | 2 cut(s) | 198, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 42 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 464 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstMAI | GTCTC | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 305, 539 |
| BstSLI | GKGCMC | 1 cut(s) | 262 |
| BstV1I | GCAGC | 2 cut(s) | 519, 530 |
| BsuRI | GGCC | 1 cut(s) | 583 |
| BtgI | CCRYGG | 1 cut(s) | 42 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 260 |
| CfoI | GCGC | 1 cut(s) | 382 |
| Cfr13I | GGNCC | 1 cut(s) | 581 |
| CseI | GACGC | 1 cut(s) | 274 |
| Csp6I | GTAC | 1 cut(s) | 39 |
| CviAII | CATG | 2 cut(s) | 242, 427 |
| CviQI | GTAC | 1 cut(s) | 39 |
| DdeI | CTNAG | 2 cut(s) | 198, 588 |
| DraIII | CACNNNGTG | 1 cut(s) | 157 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 213 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 213 |
| Eam1104I | CTCTTC | 2 cut(s) | 105, 125 |
| EarI | CTCTTC | 2 cut(s) | 105, 125 |
| Eco130I | CCWWGG | 2 cut(s) | 309, 534 |
| Eco24I | GRGCYC | 1 cut(s) | 100 |
| Eco88I | CYCGRG | 1 cut(s) | 461 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 464 |
| EcoT14I | CCWWGG | 2 cut(s) | 309, 534 |
| EcoT38I | GRGCYC | 1 cut(s) | 100 |
| ErhI | CCWWGG | 2 cut(s) | 309, 534 |
| FaeI | CATG | 2 cut(s) | 245, 430 |
| FaiI | YATR | 6 cut(s) | 177, 243, 270, 344, 428, 525 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 201, 233 |
| FatI | CATG | 2 cut(s) | 241, 426 |
| Fnu4HI | GCNGC | 2 cut(s) | 508, 519 |
| FokI | GGATG | 1 cut(s) | 290 |
| FriOI | GRGCYC | 1 cut(s) | 100 |
| Fsp4HI | GCNGC | 2 cut(s) | 508, 519 |
| FspBI | CTAG | 3 cut(s) | 155, 477, 501 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 2 cut(s) | 508, 519 |
| GsaI | CCCAGC | 1 cut(s) | 582 |
| HaeIII | GGCC | 1 cut(s) | 583 |
| HgaI | GACGC | 1 cut(s) | 274 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1II | CATG | 2 cut(s) | 245, 430 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| HinfI | GANTC | 3 cut(s) | 5, 194, 371 |
| HpaI | GTTAAC | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 2 cut(s) | 181, 260 |
| Hpy188I | TCNGA | 4 cut(s) | 138, 201, 376, 412 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 53, 568 |
| Hpy8I | GTNNAC | 2 cut(s) | 181, 260 |
| HpyAV | CCTTC | 3 cut(s) | 83, 276, 341 |
| HpyCH4III | ACNGT | 2 cut(s) | 43, 407 |
| HpyCH4IV | ACGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 2 cut(s) | 106, 260 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 305, 539 |
| HpyF3I | CTNAG | 2 cut(s) | 198, 588 |
| HpySE526I | ACGT | 1 cut(s) | 126 |
| Hsp92II | CATG | 2 cut(s) | 245, 430 |
| HspAI | GCGC | 1 cut(s) | 380 |
| KspAI | GTTAAC | 1 cut(s) | 181 |
| LguI | GCTCTTC | 1 cut(s) | 105 |
| LmnI | GCTCC | 1 cut(s) | 434 |
| LpnPI | CCDG | 5 cut(s) | 23, 80, 146, 553, 564 |
| Lsp1109I | GCAGC | 2 cut(s) | 519, 530 |
| LweI | GCATC | 2 cut(s) | 367, 446 |
| MaeI | CTAG | 3 cut(s) | 155, 477, 501 |
| MaeII | ACGT | 1 cut(s) | 126 |
| MboII | GAAGA | 4 cut(s) | 92, 112, 502, 505 |
| MhlI | GDGCHC | 2 cut(s) | 100, 262 |
| MluCI | AATT | 3 cut(s) | 83, 272, 480 |
| MnlI | CCTC | 5 cut(s) | 144, 424, 457, 460, 470 |
| MseI | TTAA | 5 cut(s) | 180, 384, 393, 422, 561 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 305, 539 |
| NlaIII | CATG | 2 cut(s) | 245, 430 |
| NlaIV | GGNNCC | 1 cut(s) | 148 |
| PaeR7I | CTCGAG | 1 cut(s) | 461 |
| PciSI | GCTCTTC | 1 cut(s) | 105 |
| PfeI | GAWTC | 3 cut(s) | 5, 194, 371 |
| PkrI | GCNGC | 2 cut(s) | 509, 520 |
| PspFI | CCCAGC | 1 cut(s) | 578 |
| PspN4I | GGNNCC | 1 cut(s) | 148 |
| PspPI | GGNCC | 1 cut(s) | 581 |
| PspXI | VCTCGAGB | 1 cut(s) | 461 |
| RsaI | GTAC | 1 cut(s) | 40 |
| RsaNI | GTAC | 1 cut(s) | 39 |
| SapI | GCTCTTC | 1 cut(s) | 105 |
| SaqAI | TTAA | 5 cut(s) | 180, 384, 393, 422, 561 |
| SatI | GCNGC | 2 cut(s) | 508, 519 |
| Sau96I | GGNCC | 1 cut(s) | 581 |
| SduI | GDGCHC | 2 cut(s) | 100, 262 |
| SfaNI | GCATC | 2 cut(s) | 367, 446 |
| Sfr274I | CTCGAG | 1 cut(s) | 461 |
| SlaI | CTCGAG | 1 cut(s) | 461 |
| SmlI | CTYRAG | 1 cut(s) | 461 |
| SmoI | CTYRAG | 1 cut(s) | 461 |
| Sse9I | AATT | 3 cut(s) | 83, 272, 480 |
| SspMI | CTAG | 3 cut(s) | 155, 477, 501 |
| StyI | CCWWGG | 2 cut(s) | 309, 534 |
| TaaI | ACNGT | 2 cut(s) | 43, 407 |
| TaiI | ACGT | 1 cut(s) | 129 |
| TaqI | TCGA | 1 cut(s) | 462 |
| TasI | AATT | 3 cut(s) | 83, 272, 480 |
| TfiI | GAWTC | 3 cut(s) | 5, 194, 371 |
| Tru1I | TTAA | 5 cut(s) | 180, 384, 393, 422, 561 |
| Tru9I | TTAA | 5 cut(s) | 180, 384, 393, 422, 561 |
| TscAI | CASTG | 1 cut(s) | 267 |
| TseI | GCWGC | 2 cut(s) | 507, 518 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspRI | CASTG | 1 cut(s) | 267 |
| VneI | GTGCAC | 1 cut(s) | 258 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 464 |
| XapI | RAATTY | 1 cut(s) | 83 |
| XhoI | CTCGAG | 1 cut(s) | 461 |
| XspI | CTAG | 3 cut(s) | 155, 477, 501 |