zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 197 - 273 | 1.8e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 117, 644 |
| Acc36I | ACCTGC | 1 cut(s) | 563 |
| AccB1I | GGYRCC | 2 cut(s) | 373, 688 |
| AciI | CCGC | 1 cut(s) | 87 |
| AcsI | RAATTY | 1 cut(s) | 359 |
| AcuI | CTGAAG | 1 cut(s) | 819 |
| AfaI | GTAC | 2 cut(s) | 631, 753 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 283 |
| AgsI | TTSAA | 3 cut(s) | 190, 382, 467 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 685, 717 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 515, 547 |
| AluBI | AGCT | 6 cut(s) | 13, 42, 311, 586, 728, 764 |
| AluI | AGCT | 6 cut(s) | 13, 42, 311, 586, 728, 764 |
| Alw26I | GTCTC | 2 cut(s) | 74, 267 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 809 |
| Ama87I | CYCGRG | 1 cut(s) | 312 |
| AoxI | GGCC | 1 cut(s) | 739 |
| ApeKI | GCWGC | 3 cut(s) | 472, 671, 809 |
| ApoI | RAATTY | 1 cut(s) | 359 |
| AsuHPI | GGTGA | 3 cut(s) | 64, 247, 436 |
| AvaI | CYCGRG | 1 cut(s) | 312 |
| BanI | GGYRCC | 2 cut(s) | 373, 688 |
| BbvI | GCAGC | 3 cut(s) | 459, 683, 796 |
| BccI | CCATC | 4 cut(s) | 15, 346, 549, 590 |
| BcoDI | GTCTC | 2 cut(s) | 74, 267 |
| BfaI | CTAG | 1 cut(s) | 485 |
| BfmI | CTRYAG | 1 cut(s) | 810 |
| BfuAI | ACCTGC | 1 cut(s) | 563 |
| BisI | GCNGC | 3 cut(s) | 473, 672, 810 |
| BlsI | GCNGC | 3 cut(s) | 474, 673, 811 |
| BmeT110I | CYCGRG | 1 cut(s) | 312 |
| BmiI | GGNNCC | 3 cut(s) | 375, 503, 690 |
| BmsI | GCATC | 2 cut(s) | 478, 640 |
| BpmI | CTGGAG | 2 cut(s) | 363, 654 |
| Bpu10I | CCTNAGC | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 2 cut(s) | 438, 639 |
| BsaI | GGTCTC | 1 cut(s) | 267 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 283 |
| Bse118I | RCCGGY | 1 cut(s) | 562 |
| Bse1I | ACTGG | 2 cut(s) | 169, 637 |
| Bse3DI | GCAATG | 4 cut(s) | 132, 246, 360, 696 |
| BseGI | GGATG | 3 cut(s) | 26, 432, 655 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BseMI | GCAATG | 4 cut(s) | 132, 246, 360, 696 |
| BseMII | CTCAG | 4 cut(s) | 221, 360, 626, 736 |
| BseNI | ACTGG | 2 cut(s) | 169, 637 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 3 cut(s) | 459, 683, 796 |
| BshFI | GGCC | 1 cut(s) | 741 |
| BshNI | GGYRCC | 2 cut(s) | 373, 688 |
| BsiHKCI | CYCGRG | 1 cut(s) | 312 |
| BsiSI | CCGG | 1 cut(s) | 563 |
| BslFI | GGGAC | 1 cut(s) | 402 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 283 |
| BsmAI | GTCTC | 2 cut(s) | 74, 267 |
| BsmFI | GGGAC | 1 cut(s) | 402 |
| BsmI | GAATGC | 2 cut(s) | 152, 215 |
| BsnI | GGCC | 1 cut(s) | 741 |
| Bso31I | GGTCTC | 1 cut(s) | 267 |
| BsoBI | CYCGRG | 1 cut(s) | 312 |
| Bsp1407I | TGTACA | 1 cut(s) | 751 |
| BspACI | CCGC | 1 cut(s) | 87 |
| BspANI | GGCC | 1 cut(s) | 741 |
| BspCNI | CTCAG | 4 cut(s) | 222, 361, 625, 735 |
| BspLI | GGNNCC | 3 cut(s) | 375, 503, 690 |
| BspMAI | CTGCAG | 1 cut(s) | 814 |
| BspMI | ACCTGC | 1 cut(s) | 563 |
| BspT107I | GGYRCC | 2 cut(s) | 373, 688 |
| BspTNI | GGTCTC | 1 cut(s) | 267 |
| BsrDI | GCAATG | 4 cut(s) | 132, 246, 360, 696 |
| BsrFI | RCCGGY | 1 cut(s) | 562 |
| BsrGI | TGTACA | 1 cut(s) | 751 |
| BsrI | ACTGG | 2 cut(s) | 169, 637 |
| BssAI | RCCGGY | 1 cut(s) | 562 |
| Bst4CI | ACNGT | 4 cut(s) | 412, 481, 688, 823 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 131, 677, 809 |
| BstAUI | TGTACA | 1 cut(s) | 751 |
| BstC8I | GCNNGC | 4 cut(s) | 49, 132, 162, 351 |
| BstDEI | CTNAG | 6 cut(s) | 38, 230, 369, 567, 612, 722 |
| BstF5I | GGATG | 3 cut(s) | 26, 432, 655 |
| BstMAI | GTCTC | 2 cut(s) | 74, 267 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 48, 131, 677, 809 |
| BstNSI | RCATGY | 1 cut(s) | 716 |
| BstSFI | CTRYAG | 1 cut(s) | 810 |
| BstV1I | GCAGC | 3 cut(s) | 459, 683, 796 |
| BsuRI | GGCC | 1 cut(s) | 741 |
| BtsCI | GGATG | 3 cut(s) | 26, 432, 655 |
| BtsI | GCAGTG | 1 cut(s) | 810 |
| BtsIMutI | CAGTG | 1 cut(s) | 810 |
| BveI | ACCTGC | 1 cut(s) | 563 |
| Cac8I | GCNNGC | 4 cut(s) | 49, 132, 162, 351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 809 |
| Cfr10I | RCCGGY | 1 cut(s) | 562 |
| CseI | GACGC | 1 cut(s) | 50 |
| Csp6I | GTAC | 2 cut(s) | 630, 752 |
| CviAII | CATG | 4 cut(s) | 80, 269, 514, 713 |
| CviQI | GTAC | 2 cut(s) | 630, 752 |
| DdeI | CTNAG | 6 cut(s) | 38, 230, 369, 567, 612, 722 |
| DraI | TTTAAA | 1 cut(s) | 418 |
| EciI | GGCGGA | 1 cut(s) | 102 |
| Eco147I | AGGCCT | 1 cut(s) | 741 |
| Eco31I | GGTCTC | 1 cut(s) | 267 |
| Eco57I | CTGAAG | 1 cut(s) | 819 |
| Eco88I | CYCGRG | 1 cut(s) | 312 |
| FaeI | CATG | 4 cut(s) | 83, 272, 517, 716 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 729, 761 |
| FaqI | GGGAC | 1 cut(s) | 402 |
| FatI | CATG | 4 cut(s) | 79, 268, 513, 712 |
| Fnu4HI | GCNGC | 3 cut(s) | 473, 672, 810 |
| FokI | GGATG | 3 cut(s) | 33, 439, 662 |
| Fsp4HI | GCNGC | 3 cut(s) | 473, 672, 810 |
| FspBI | CTAG | 1 cut(s) | 485 |
| GluI | GCNGC | 3 cut(s) | 473, 672, 810 |
| GsuI | CTGGAG | 2 cut(s) | 363, 654 |
| HaeIII | GGCC | 1 cut(s) | 741 |
| HapII | CCGG | 1 cut(s) | 563 |
| HgaI | GACGC | 1 cut(s) | 50 |
| Hin1II | CATG | 4 cut(s) | 83, 272, 517, 716 |
| HindIII | AAGCTT | 1 cut(s) | 11 |
| HinfI | GANTC | 3 cut(s) | 240, 538, 785 |
| HpaII | CCGG | 1 cut(s) | 563 |
| HphI | GGTGA | 3 cut(s) | 64, 247, 436 |
| Hpy188I | TCNGA | 5 cut(s) | 231, 370, 615, 725, 790 |
| Hpy188III | TCNNGA | 3 cut(s) | 342, 455, 485 |
| HpyAV | CCTTC | 4 cut(s) | 77, 388, 731, 755 |
| HpyCH4III | ACNGT | 4 cut(s) | 412, 481, 688, 823 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 8 cut(s) | 47, 160, 282, 353, 400, 440, 671, 812 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 48, 131, 677, 809 |
| HpyF3I | CTNAG | 6 cut(s) | 38, 230, 369, 567, 612, 722 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92II | CATG | 4 cut(s) | 83, 272, 517, 716 |
| LmnI | GCTCC | 1 cut(s) | 58 |
| Lsp1109I | GCAGC | 3 cut(s) | 459, 683, 796 |
| LweI | GCATC | 2 cut(s) | 478, 640 |
| MaeI | CTAG | 1 cut(s) | 485 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MfeI | CAATTG | 1 cut(s) | 395 |
| MluCI | AATT | 3 cut(s) | 118, 359, 395 |
| MlyI | GAGTC | 1 cut(s) | 532 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MseI | TTAA | 4 cut(s) | 99, 417, 708, 732 |
| MspI | CCGG | 1 cut(s) | 563 |
| MunI | CAATTG | 1 cut(s) | 395 |
| Mva1269I | GAATGC | 2 cut(s) | 152, 215 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 48, 131, 677, 809 |
| NlaIII | CATG | 4 cut(s) | 83, 272, 517, 716 |
| NlaIV | GGNNCC | 3 cut(s) | 375, 503, 690 |
| NspI | RCATGY | 1 cut(s) | 716 |
| PaeR7I | CTCGAG | 1 cut(s) | 312 |
| PceI | AGGCCT | 1 cut(s) | 741 |
| PctI | GAATGC | 2 cut(s) | 152, 215 |
| PfeI | GAWTC | 2 cut(s) | 240, 785 |
| PkrI | GCNGC | 3 cut(s) | 474, 673, 811 |
| PleI | GAGTC | 1 cut(s) | 532 |
| PpsI | GAGTC | 1 cut(s) | 532 |
| PsiI | TTATAA | 2 cut(s) | 117, 644 |
| PspN4I | GGNNCC | 3 cut(s) | 375, 503, 690 |
| PspXI | VCTCGAGB | 1 cut(s) | 312 |
| PstI | CTGCAG | 1 cut(s) | 814 |
| PstNI | CAGNNNCTG | 1 cut(s) | 809 |
| RsaI | GTAC | 2 cut(s) | 631, 753 |
| RsaNI | GTAC | 2 cut(s) | 630, 752 |
| SaqAI | TTAA | 4 cut(s) | 99, 417, 708, 732 |
| SatI | GCNGC | 3 cut(s) | 473, 672, 810 |
| SchI | GAGTC | 1 cut(s) | 532 |
| SfaNI | GCATC | 2 cut(s) | 478, 640 |
| SfcI | CTRYAG | 1 cut(s) | 810 |
| Sfr274I | CTCGAG | 1 cut(s) | 312 |
| SlaI | CTCGAG | 1 cut(s) | 312 |
| SmlI | CTYRAG | 3 cut(s) | 312, 453, 654 |
| SmoI | CTYRAG | 3 cut(s) | 312, 453, 654 |
| Sse9I | AATT | 3 cut(s) | 118, 359, 395 |
| SseBI | AGGCCT | 1 cut(s) | 741 |
| SsiI | CCGC | 1 cut(s) | 87 |
| SspMI | CTAG | 1 cut(s) | 485 |
| StuI | AGGCCT | 1 cut(s) | 741 |
| TaaI | ACNGT | 4 cut(s) | 412, 481, 688, 823 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 1 cut(s) | 313 |
| TasI | AATT | 3 cut(s) | 118, 359, 395 |
| TatI | WGTACW | 1 cut(s) | 751 |
| TfiI | GAWTC | 2 cut(s) | 240, 785 |
| Tru1I | TTAA | 4 cut(s) | 99, 417, 708, 732 |
| Tru9I | TTAA | 4 cut(s) | 99, 417, 708, 732 |
| TscAI | CASTG | 1 cut(s) | 810 |
| TseI | GCWGC | 3 cut(s) | 472, 671, 809 |
| TspDTI | ATGAA | 3 cut(s) | 96, 208, 371 |
| TspRI | CASTG | 1 cut(s) | 810 |
| XapI | RAATTY | 1 cut(s) | 359 |
| XbaI | TCTAGA | 1 cut(s) | 484 |
| XceI | RCATGY | 1 cut(s) | 716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 338 |
| XhoI | CTCGAG | 1 cut(s) | 312 |
| XspI | CTAG | 1 cut(s) | 485 |