ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 22 - 144 | 7.4e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 157 |
| AccB1I | GGYRCC | 1 cut(s) | 157 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 167 |
| AciI | CCGC | 1 cut(s) | 155 |
| AcsI | RAATTY | 1 cut(s) | 64 |
| AcvI | CACGTG | 1 cut(s) | 235 |
| AdeI | CACNNNGTG | 1 cut(s) | 385 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 167, 250, 256 |
| AgsI | TTSAA | 3 cut(s) | 122, 142, 320 |
| AjnI | CCWGG | 1 cut(s) | 249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 78 |
| AoxI | GGCC | 1 cut(s) | 470 |
| ApoI | RAATTY | 1 cut(s) | 64 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| Asp718I | GGTACC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 2 cut(s) | 18, 470 |
| AsuHPI | GGTGA | 2 cut(s) | 275, 404 |
| AsuNHI | GCTAGC | 1 cut(s) | 418 |
| AvaII | GGWCC | 1 cut(s) | 18 |
| BaeGI | GKGCMC | 1 cut(s) | 381 |
| BanI | GGYRCC | 1 cut(s) | 157 |
| BbrPI | CACGTG | 1 cut(s) | 235 |
| BccI | CCATC | 1 cut(s) | 145 |
| BciT130I | CCWGG | 1 cut(s) | 251 |
| BfaI | CTAG | 1 cut(s) | 419 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 1 cut(s) | 251 |
| Bme18I | GGWCC | 1 cut(s) | 18 |
| BmgT120I | GGNCC | 2 cut(s) | 18, 470 |
| BmiI | GGNNCC | 4 cut(s) | 20, 159, 471, 482 |
| BmrFI | CCNGG | 1 cut(s) | 251 |
| BmsI | GCATC | 2 cut(s) | 15, 256 |
| BmtI | GCTAGC | 1 cut(s) | 422 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| BsaAI | YACGTR | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 1 cut(s) | 198 |
| BsaWI | WCCGGW | 1 cut(s) | 15 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 167, 250, 256 |
| Bse118I | RCCGGY | 1 cut(s) | 414 |
| Bse3DI | GCAATG | 1 cut(s) | 406 |
| BseBI | CCWGG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 1 cut(s) | 198 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 167, 250, 256 |
| BseMI | GCAATG | 1 cut(s) | 406 |
| BseMII | CTCAG | 1 cut(s) | 465 |
| BseSI | GKGCMC | 1 cut(s) | 381 |
| BseYI | CCCAGC | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 472 |
| BshNI | GGYRCC | 1 cut(s) | 157 |
| BsiSI | CCGG | 2 cut(s) | 16, 415 |
| BslFI | GGGAC | 1 cut(s) | 4 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 167, 250, 256 |
| BsmFI | GGGAC | 1 cut(s) | 4 |
| BsnI | GGCC | 1 cut(s) | 472 |
| Bsp1286I | GDGCHC | 1 cut(s) | 381 |
| Bsp143I | GATC | 1 cut(s) | 185 |
| BspACI | CCGC | 1 cut(s) | 155 |
| BspANI | GGCC | 1 cut(s) | 472 |
| BspCNI | CTCAG | 1 cut(s) | 466 |
| BspLI | GGNNCC | 4 cut(s) | 20, 159, 471, 482 |
| BspOI | GCTAGC | 1 cut(s) | 422 |
| BspT107I | GGYRCC | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 406 |
| BsrFI | RCCGGY | 1 cut(s) | 414 |
| BssAI | RCCGGY | 1 cut(s) | 414 |
| BssECI | CCNNGG | 1 cut(s) | 198 |
| BssMI | GATC | 1 cut(s) | 185 |
| BssT1I | CCWWGG | 1 cut(s) | 198 |
| Bst2UI | CCWGG | 1 cut(s) | 251 |
| Bst4CI | ACNGT | 4 cut(s) | 53, 95, 128, 222 |
| BstBAI | YACGTR | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 1 cut(s) | 420 |
| BstDEI | CTNAG | 1 cut(s) | 474 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstKTI | GATC | 1 cut(s) | 188 |
| BstMBI | GATC | 1 cut(s) | 185 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 428, 478 |
| BstNI | CCWGG | 1 cut(s) | 251 |
| BstSCI | CCNGG | 1 cut(s) | 249 |
| BstSLI | GKGCMC | 1 cut(s) | 381 |
| BsuRI | GGCC | 1 cut(s) | 472 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| BtsIMutI | CAGTG | 1 cut(s) | 106 |
| Cac8I | GCNNGC | 1 cut(s) | 420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 78 |
| Cfr10I | RCCGGY | 1 cut(s) | 414 |
| Cfr13I | GGNCC | 2 cut(s) | 18, 470 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 171, 206 |
| CviAII | CATG | 1 cut(s) | 212 |
| CviJI | RGCY | 9 cut(s) | 77, 106, 197, 240, 418, 431, 448, 472, 481 |
| CviKI_1 | RGCY | 9 cut(s) | 77, 106, 197, 240, 418, 431, 448, 472, 481 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DdeI | CTNAG | 1 cut(s) | 474 |
| DpnI | GATC | 1 cut(s) | 187 |
| DpnII | GATC | 1 cut(s) | 185 |
| DraIII | CACNNNGTG | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 198 |
| Eco47I | GGWCC | 1 cut(s) | 18 |
| Eco72I | CACGTG | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 1 cut(s) | 470 |
| EcoRII | CCWGG | 1 cut(s) | 249 |
| EcoT14I | CCWWGG | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 198 |
| FaeI | CATG | 1 cut(s) | 215 |
| FaiI | YATR | 3 cut(s) | 31, 86, 213 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FaqI | GGGAC | 1 cut(s) | 4 |
| FatI | CATG | 1 cut(s) | 211 |
| FokI | GGATG | 1 cut(s) | 347 |
| FspBI | CTAG | 1 cut(s) | 419 |
| GsaI | CCCAGC | 1 cut(s) | 110 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| HaeIII | GGCC | 1 cut(s) | 472 |
| HapII | CCGG | 2 cut(s) | 16, 415 |
| Hin1II | CATG | 1 cut(s) | 215 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HinfI | GANTC | 2 cut(s) | 313, 464 |
| HpaII | CCGG | 2 cut(s) | 16, 415 |
| HphI | GGTGA | 2 cut(s) | 275, 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 49, 218 |
| Hpy188III | TCNNGA | 4 cut(s) | 58, 122, 302, 317 |
| Hpy8I | GTNNAC | 2 cut(s) | 49, 218 |
| HpyAV | CCTTC | 4 cut(s) | 51, 254, 314, 389 |
| HpyCH4III | ACNGT | 4 cut(s) | 53, 95, 128, 222 |
| HpyCH4IV | ACGT | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 232 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 428, 478 |
| HpyF3I | CTNAG | 1 cut(s) | 474 |
| HpySE526I | ACGT | 1 cut(s) | 234 |
| Hsp92II | CATG | 1 cut(s) | 215 |
| KpnI | GGTACC | 1 cut(s) | 161 |
| Kzo9I | GATC | 1 cut(s) | 185 |
| LmnI | GCTCC | 1 cut(s) | 486 |
| LpnPI | CCDG | 7 cut(s) | 29, 35, 91, 92, 236, 263, 428 |
| LweI | GCATC | 2 cut(s) | 15, 256 |
| MaeI | CTAG | 1 cut(s) | 419 |
| MaeII | ACGT | 1 cut(s) | 234 |
| MalI | GATC | 1 cut(s) | 187 |
| MboI | GATC | 1 cut(s) | 185 |
| MboII | GAAGA | 2 cut(s) | 100, 167 |
| MhlI | GDGCHC | 1 cut(s) | 381 |
| MluCI | AATT | 3 cut(s) | 64, 405, 438 |
| MlyI | GAGTC | 2 cut(s) | 322, 473 |
| MnlI | CCTC | 3 cut(s) | 48, 189, 247 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MseI | TTAA | 3 cut(s) | 246, 342, 434 |
| MspI | CCGG | 2 cut(s) | 16, 415 |
| MspR9I | CCNGG | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 428, 478 |
| NdeII | GATC | 1 cut(s) | 185 |
| NheI | GCTAGC | 1 cut(s) | 418 |
| NlaIII | CATG | 1 cut(s) | 215 |
| NlaIV | GGNNCC | 4 cut(s) | 20, 159, 471, 482 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 167 |
| PleI | GAGTC | 2 cut(s) | 321, 472 |
| PmaCI | CACGTG | 1 cut(s) | 235 |
| PmlI | CACGTG | 1 cut(s) | 235 |
| PpsI | GAGTC | 2 cut(s) | 321, 472 |
| Ppu21I | YACGTR | 1 cut(s) | 235 |
| Psp6I | CCWGG | 1 cut(s) | 249 |
| PspCI | CACGTG | 1 cut(s) | 235 |
| PspFI | CCCAGC | 1 cut(s) | 106 |
| PspGI | CCWGG | 1 cut(s) | 249 |
| PspN4I | GGNNCC | 4 cut(s) | 20, 159, 471, 482 |
| PspPI | GGNCC | 2 cut(s) | 18, 470 |
| PstNI | CAGNNNCTG | 1 cut(s) | 78 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| SaqAI | TTAA | 3 cut(s) | 246, 342, 434 |
| Sau3AI | GATC | 1 cut(s) | 185 |
| Sau96I | GGNCC | 2 cut(s) | 18, 470 |
| SchI | GAGTC | 2 cut(s) | 322, 473 |
| ScrFI | CCNGG | 1 cut(s) | 251 |
| SduI | GDGCHC | 1 cut(s) | 381 |
| SetI | ASST | 5 cut(s) | 40, 237, 252, 258, 265 |
| SfaNI | GCATC | 2 cut(s) | 15, 256 |
| SinI | GGWCC | 1 cut(s) | 18 |
| Sse9I | AATT | 3 cut(s) | 64, 405, 438 |
| SsiI | CCGC | 1 cut(s) | 155 |
| SspMI | CTAG | 1 cut(s) | 419 |
| StyD4I | CCNGG | 1 cut(s) | 249 |
| StyI | CCWWGG | 1 cut(s) | 198 |
| TaaI | ACNGT | 4 cut(s) | 53, 95, 128, 222 |
| TaiI | ACGT | 1 cut(s) | 237 |
| TaqI | TCGA | 1 cut(s) | 69 |
| TasI | AATT | 3 cut(s) | 64, 405, 438 |
| Tru1I | TTAA | 3 cut(s) | 246, 342, 434 |
| Tru9I | TTAA | 3 cut(s) | 246, 342, 434 |
| TscAI | CASTG | 1 cut(s) | 106 |
| TspDTI | ATGAA | 3 cut(s) | 77, 101, 351 |
| TspRI | CASTG | 1 cut(s) | 106 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 167 |
| VpaK11BI | GGWCC | 1 cut(s) | 18 |
| XapI | RAATTY | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 1 cut(s) | 419 |