Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 203 | 6.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 16 |
| Acc36I | ACCTGC | 1 cut(s) | 16 |
| AccII | CGCG | 2 cut(s) | 431, 571 |
| AccIII | TCCGGA | 1 cut(s) | 532 |
| AciI | CCGC | 8 cut(s) | 22, 269, 329, 431, 494, 497, 569, 571 |
| AcsI | RAATTY | 1 cut(s) | 605 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 224 |
| AgsI | TTSAA | 2 cut(s) | 97, 241 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AluBI | AGCT | 4 cut(s) | 232, 359, 466, 587 |
| AluI | AGCT | 4 cut(s) | 232, 359, 466, 587 |
| Ama87I | CYCGRG | 1 cut(s) | 615 |
| Aor13HI | TCCGGA | 1 cut(s) | 532 |
| AoxI | GGCC | 2 cut(s) | 155, 271 |
| ApeKI | GCWGC | 6 cut(s) | 112, 211, 254, 326, 463, 587 |
| ApoI | RAATTY | 1 cut(s) | 605 |
| AseI | ATTAAT | 2 cut(s) | 264, 471 |
| AspS9I | GGNCC | 2 cut(s) | 155, 271 |
| AsuC2I | CCSGG | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 1 cut(s) | 415 |
| AsuNHI | GCTAGC | 1 cut(s) | 376 |
| AvaI | CYCGRG | 1 cut(s) | 615 |
| BbvI | GCAGC | 6 cut(s) | 99, 223, 266, 313, 475, 574 |
| BccI | CCATC | 5 cut(s) | 101, 131, 242, 394, 520 |
| BcnI | CCSGG | 1 cut(s) | 310 |
| BfaI | CTAG | 2 cut(s) | 377, 552 |
| BfuAI | ACCTGC | 1 cut(s) | 16 |
| BisI | GCNGC | 9 cut(s) | 23, 113, 212, 255, 327, 464, 495, 569, 588 |
| BlsI | GCNGC | 9 cut(s) | 24, 114, 213, 256, 328, 465, 496, 570, 589 |
| Bme1390I | CCNGG | 1 cut(s) | 310 |
| BmeT110I | CYCGRG | 1 cut(s) | 615 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 271 |
| BmiI | GGNNCC | 1 cut(s) | 531 |
| BmrFI | CCNGG | 1 cut(s) | 310 |
| BmrI | ACTGGG | 1 cut(s) | 344 |
| BmsI | GCATC | 2 cut(s) | 266, 583 |
| BmtI | GCTAGC | 1 cut(s) | 380 |
| BmuI | ACTGGG | 1 cut(s) | 344 |
| BpuMI | CCSGG | 1 cut(s) | 310 |
| BsaJI | CCNNGG | 3 cut(s) | 309, 569, 616 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 183, 213 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bse1I | ACTGG | 1 cut(s) | 350 |
| BseAI | TCCGGA | 1 cut(s) | 532 |
| BseDI | CCNNGG | 3 cut(s) | 309, 569, 616 |
| BseGI | GGATG | 2 cut(s) | 142, 541 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BseNI | ACTGG | 1 cut(s) | 350 |
| BseRI | GAGGAG | 4 cut(s) | 70, 73, 86, 530 |
| BseXI | GCAGC | 6 cut(s) | 99, 223, 266, 313, 475, 574 |
| BsgI | GTGCAG | 2 cut(s) | 477, 482 |
| Bsh1236I | CGCG | 2 cut(s) | 431, 571 |
| BshFI | GGCC | 2 cut(s) | 157, 273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 615 |
| BsiSI | CCGG | 2 cut(s) | 309, 533 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BsnI | GGCC | 2 cut(s) | 157, 273 |
| BsoBI | CYCGRG | 1 cut(s) | 615 |
| Bsp13I | TCCGGA | 1 cut(s) | 532 |
| BspACI | CCGC | 8 cut(s) | 22, 269, 329, 431, 494, 497, 569, 571 |
| BspANI | GGCC | 2 cut(s) | 157, 273 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspEI | TCCGGA | 1 cut(s) | 532 |
| BspFNI | CGCG | 2 cut(s) | 431, 571 |
| BspLI | GGNNCC | 1 cut(s) | 531 |
| BspMI | ACCTGC | 1 cut(s) | 16 |
| BspOI | GCTAGC | 1 cut(s) | 380 |
| BsrI | ACTGG | 1 cut(s) | 350 |
| BssECI | CCNNGG | 3 cut(s) | 309, 569, 616 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 3 cut(s) | 42, 271, 378 |
| BstDEI | CTNAG | 2 cut(s) | 33, 452 |
| BstDSI | CCRYGG | 1 cut(s) | 569 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 222 |
| BstF5I | GGATG | 2 cut(s) | 142, 541 |
| BstFNI | CGCG | 2 cut(s) | 431, 571 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 118, 163, 568, 593 |
| BstNSI | RCATGY | 3 cut(s) | 119, 184, 562 |
| BstSCI | CCNGG | 1 cut(s) | 308 |
| BstUI | CGCG | 2 cut(s) | 431, 571 |
| BstV1I | GCAGC | 6 cut(s) | 99, 223, 266, 313, 475, 574 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 388 |
| BsuRI | GGCC | 2 cut(s) | 157, 273 |
| BtgI | CCRYGG | 1 cut(s) | 569 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsCI | GGATG | 2 cut(s) | 142, 541 |
| BtsI | GCAGTG | 1 cut(s) | 465 |
| BtsIMutI | CAGTG | 1 cut(s) | 465 |
| BveI | ACCTGC | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 3 cut(s) | 42, 271, 378 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 271 |
| Cfr42I | CCGCGG | 1 cut(s) | 572 |
| CviAII | CATG | 5 cut(s) | 116, 122, 146, 181, 559 |
| DdeI | CTNAG | 2 cut(s) | 33, 452 |
| EciI | GGCGGA | 1 cut(s) | 512 |
| Eco88I | CYCGRG | 1 cut(s) | 615 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 222 |
| EcoT22I | ATGCAT | 1 cut(s) | 564 |
| FaeI | CATG | 5 cut(s) | 119, 125, 149, 184, 562 |
| FatI | CATG | 5 cut(s) | 115, 121, 145, 180, 558 |
| FauI | CCCGC | 2 cut(s) | 262, 322 |
| Fnu4HI | GCNGC | 9 cut(s) | 23, 113, 212, 255, 327, 464, 495, 569, 588 |
| FokI | GGATG | 2 cut(s) | 149, 548 |
| Fsp4HI | GCNGC | 9 cut(s) | 23, 113, 212, 255, 327, 464, 495, 569, 588 |
| FspBI | CTAG | 2 cut(s) | 377, 552 |
| GluI | GCNGC | 9 cut(s) | 23, 113, 212, 255, 327, 464, 495, 569, 588 |
| HaeIII | GGCC | 2 cut(s) | 157, 273 |
| HapII | CCGG | 2 cut(s) | 309, 533 |
| Hin1II | CATG | 5 cut(s) | 119, 125, 149, 184, 562 |
| HpaII | CCGG | 2 cut(s) | 309, 533 |
| HphI | GGTGA | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 370 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 533 |
| HpyAV | CCTTC | 3 cut(s) | 400, 408, 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 118, 163, 568, 593 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 452 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 5 cut(s) | 119, 125, 149, 184, 562 |
| Kpn2I | TCCGGA | 1 cut(s) | 532 |
| KspI | CCGCGG | 1 cut(s) | 572 |
| LpnPI | CCDG | 6 cut(s) | 11, 152, 231, 322, 363, 546 |
| Lsp1109I | GCAGC | 6 cut(s) | 99, 223, 266, 313, 475, 574 |
| LweI | GCATC | 2 cut(s) | 266, 583 |
| MaeI | CTAG | 2 cut(s) | 377, 552 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MfeI | CAATTG | 1 cut(s) | 597 |
| MmeI | TCCRAC | 1 cut(s) | 375 |
| Mph1103I | ATGCAT | 1 cut(s) | 564 |
| MroI | TCCGGA | 1 cut(s) | 532 |
| MseI | TTAA | 3 cut(s) | 176, 264, 471 |
| MslI | CAYNNNNRTG | 3 cut(s) | 120, 150, 386 |
| MspA1I | CMGCKG | 1 cut(s) | 571 |
| MspI | CCGG | 2 cut(s) | 309, 533 |
| MspR9I | CCNGG | 1 cut(s) | 310 |
| MunI | CAATTG | 1 cut(s) | 597 |
| MvnI | CGCG | 2 cut(s) | 431, 571 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 118, 163, 568, 593 |
| NciI | CCSGG | 1 cut(s) | 310 |
| NheI | GCTAGC | 1 cut(s) | 376 |
| NlaIII | CATG | 5 cut(s) | 119, 125, 149, 184, 562 |
| NlaIV | GGNNCC | 1 cut(s) | 531 |
| NsiI | ATGCAT | 1 cut(s) | 564 |
| NspI | RCATGY | 3 cut(s) | 119, 184, 562 |
| PaqCI | CACCTGC | 1 cut(s) | 16 |
| PkrI | GCNGC | 9 cut(s) | 24, 114, 213, 256, 328, 465, 496, 570, 589 |
| PshBI | ATTAAT | 2 cut(s) | 264, 471 |
| PspN4I | GGNNCC | 1 cut(s) | 531 |
| PspPI | GGNCC | 2 cut(s) | 155, 271 |
| RseI | CAYNNNNRTG | 3 cut(s) | 120, 150, 386 |
| SacII | CCGCGG | 1 cut(s) | 572 |
| SaqAI | TTAA | 3 cut(s) | 176, 264, 471 |
| SatI | GCNGC | 9 cut(s) | 23, 113, 212, 255, 327, 464, 495, 569, 588 |
| Sau96I | GGNCC | 2 cut(s) | 155, 271 |
| ScrFI | CCNGG | 1 cut(s) | 310 |
| SfaNI | GCATC | 2 cut(s) | 266, 583 |
| Sfr303I | CCGCGG | 1 cut(s) | 572 |
| SgrBI | CCGCGG | 1 cut(s) | 572 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 120, 150, 386 |
| SsiI | CCGC | 8 cut(s) | 22, 269, 329, 431, 494, 497, 569, 571 |
| SspMI | CTAG | 2 cut(s) | 377, 552 |
| StyD4I | CCNGG | 1 cut(s) | 308 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TauI | GCSGC | 3 cut(s) | 25, 497, 571 |
| Tru1I | TTAA | 3 cut(s) | 176, 264, 471 |
| Tru9I | TTAA | 3 cut(s) | 176, 264, 471 |
| TscAI | CASTG | 1 cut(s) | 465 |
| TseI | GCWGC | 6 cut(s) | 112, 211, 254, 326, 463, 587 |
| TspDTI | ATGAA | 3 cut(s) | 318, 533, 552 |
| TspRI | CASTG | 1 cut(s) | 465 |
| VspI | ATTAAT | 2 cut(s) | 264, 471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 222 |
| XapI | RAATTY | 1 cut(s) | 605 |
| XceI | RCATGY | 3 cut(s) | 119, 184, 562 |
| XspI | CTAG | 2 cut(s) | 377, 552 |
| Zsp2I | ATGCAT | 1 cut(s) | 564 |