ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 89 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 61 |
| AccII | CGCG | 1 cut(s) | 406 |
| AciI | CCGC | 2 cut(s) | 424, 660 |
| AcsI | RAATTY | 3 cut(s) | 78, 223, 710 |
| AfaI | GTAC | 1 cut(s) | 771 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 61, 377, 659 |
| AflII | CTTAAG | 1 cut(s) | 35 |
| AgsI | TTSAA | 5 cut(s) | 223, 228, 251, 561, 761 |
| AjnI | CCWGG | 1 cut(s) | 719 |
| AluBI | AGCT | 3 cut(s) | 368, 460, 764 |
| AluI | AGCT | 3 cut(s) | 368, 460, 764 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 386 |
| ApeKI | GCWGC | 1 cut(s) | 467 |
| ApoI | RAATTY | 3 cut(s) | 78, 223, 710 |
| AseI | ATTAAT | 1 cut(s) | 546 |
| AspS9I | GGNCC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 1 cut(s) | 616 |
| AvaII | GGWCC | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 204 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 753, 785 |
| BbvI | GCAGC | 1 cut(s) | 454 |
| BccI | CCATC | 2 cut(s) | 578, 735 |
| BceAI | ACGGC | 2 cut(s) | 151, 394 |
| BciT130I | CCWGG | 1 cut(s) | 721 |
| BfaI | CTAG | 2 cut(s) | 357, 521 |
| BfrI | CTTAAG | 1 cut(s) | 35 |
| BfuAI | ACCTGC | 1 cut(s) | 89 |
| BisI | GCNGC | 2 cut(s) | 425, 468 |
| BlsI | GCNGC | 2 cut(s) | 426, 469 |
| Bme1390I | CCNGG | 1 cut(s) | 721 |
| Bme18I | GGWCC | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 1 cut(s) | 52 |
| BmiI | GGNNCC | 1 cut(s) | 53 |
| BmrFI | CCNGG | 1 cut(s) | 721 |
| BmsI | GCATC | 5 cut(s) | 55, 292, 307, 502, 647 |
| BpmI | CTGGAG | 1 cut(s) | 403 |
| BpuEI | CTTGAG | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 343 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 61, 377, 659 |
| Bse3DI | GCAATG | 2 cut(s) | 23, 580 |
| BseBI | CCWGG | 1 cut(s) | 721 |
| BseDI | CCNNGG | 2 cut(s) | 93, 343 |
| BseGI | GGATG | 1 cut(s) | 70 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 61, 377, 659 |
| BseMI | GCAATG | 2 cut(s) | 23, 580 |
| BseMII | CTCAG | 2 cut(s) | 219, 701 |
| BseRI | GAGGAG | 2 cut(s) | 581, 614 |
| BseXI | GCAGC | 1 cut(s) | 454 |
| Bsh1236I | CGCG | 1 cut(s) | 406 |
| BshFI | GGCC | 1 cut(s) | 388 |
| BslFI | GGGAC | 1 cut(s) | 65 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 61, 377, 659 |
| BsmFI | GGGAC | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 388 |
| Bsp1286I | GDGCHC | 1 cut(s) | 204 |
| Bsp19I | CCATGG | 1 cut(s) | 343 |
| BspACI | CCGC | 2 cut(s) | 424, 660 |
| BspANI | GGCC | 1 cut(s) | 388 |
| BspCNI | CTCAG | 2 cut(s) | 218, 700 |
| BspFNI | CGCG | 1 cut(s) | 406 |
| BspLI | GGNNCC | 1 cut(s) | 53 |
| BspMI | ACCTGC | 1 cut(s) | 89 |
| BspTI | CTTAAG | 1 cut(s) | 35 |
| BsrDI | GCAATG | 2 cut(s) | 23, 580 |
| BssECI | CCNNGG | 2 cut(s) | 93, 343 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 343 |
| Bst2UI | CCWGG | 1 cut(s) | 721 |
| Bst4CI | ACNGT | 1 cut(s) | 276 |
| BstAFI | CTTAAG | 1 cut(s) | 35 |
| BstDEI | CTNAG | 2 cut(s) | 205, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 343 |
| BstF5I | GGATG | 1 cut(s) | 70 |
| BstFNI | CGCG | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 95, 457, 692, 754 |
| BstNI | CCWGG | 1 cut(s) | 721 |
| BstNSI | RCATGY | 3 cut(s) | 142, 174, 431 |
| BstSCI | CCNGG | 1 cut(s) | 719 |
| BstUI | CGCG | 1 cut(s) | 406 |
| BstV1I | GCAGC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 388 |
| BtgI | CCRYGG | 1 cut(s) | 343 |
| BtsCI | GGATG | 1 cut(s) | 70 |
| BveI | ACCTGC | 1 cut(s) | 89 |
| CaiI | CAGNNNCTG | 1 cut(s) | 266 |
| Cfr13I | GGNCC | 1 cut(s) | 52 |
| CseI | GACGC | 1 cut(s) | 539 |
| Csp6I | GTAC | 1 cut(s) | 770 |
| CviAII | CATG | 5 cut(s) | 139, 171, 344, 420, 428 |
| CviQI | GTAC | 1 cut(s) | 770 |
| DdeI | CTNAG | 2 cut(s) | 205, 687 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 343 |
| Eco147I | AGGCCT | 1 cut(s) | 388 |
| Eco24I | GRGCYC | 1 cut(s) | 204 |
| Eco32I | GATATC | 1 cut(s) | 161 |
| Eco47I | GGWCC | 1 cut(s) | 52 |
| EcoRI | GAATTC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 719 |
| EcoRV | GATATC | 1 cut(s) | 161 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 343 |
| EcoT38I | GRGCYC | 1 cut(s) | 204 |
| ErhI | CCWWGG | 2 cut(s) | 93, 343 |
| FaeI | CATG | 5 cut(s) | 142, 174, 347, 423, 431 |
| FaqI | GGGAC | 1 cut(s) | 65 |
| FatI | CATG | 5 cut(s) | 138, 170, 343, 419, 427 |
| Fnu4HI | GCNGC | 2 cut(s) | 425, 468 |
| FokI | GGATG | 1 cut(s) | 77 |
| FriOI | GRGCYC | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 2 cut(s) | 425, 468 |
| FspBI | CTAG | 2 cut(s) | 357, 521 |
| GluI | GCNGC | 2 cut(s) | 425, 468 |
| GsuI | CTGGAG | 1 cut(s) | 403 |
| HaeIII | GGCC | 1 cut(s) | 388 |
| HgaI | GACGC | 1 cut(s) | 539 |
| Hin1II | CATG | 5 cut(s) | 142, 174, 347, 423, 431 |
| HinfI | GANTC | 2 cut(s) | 213, 649 |
| HphI | GGTGA | 1 cut(s) | 616 |
| Hpy166II | GTNNAC | 1 cut(s) | 607 |
| Hpy188I | TCNGA | 1 cut(s) | 262 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 521 |
| Hpy8I | GTNNAC | 1 cut(s) | 607 |
| HpyAV | CCTTC | 2 cut(s) | 175, 245 |
| HpyCH4III | ACNGT | 1 cut(s) | 276 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 95, 457, 692, 754 |
| HpyF3I | CTNAG | 2 cut(s) | 205, 687 |
| Hsp92II | CATG | 5 cut(s) | 142, 174, 347, 423, 431 |
| LmnI | GCTCC | 3 cut(s) | 373, 457, 753 |
| LpnPI | CCDG | 5 cut(s) | 84, 367, 408, 706, 733 |
| Lsp1109I | GCAGC | 1 cut(s) | 454 |
| LweI | GCATC | 5 cut(s) | 55, 292, 307, 502, 647 |
| MaeI | CTAG | 2 cut(s) | 357, 521 |
| MaeIII | GTNAC | 3 cut(s) | 101, 704, 715 |
| MhlI | GDGCHC | 1 cut(s) | 204 |
| MluCI | AATT | 6 cut(s) | 78, 114, 223, 440, 622, 710 |
| MlyI | GAGTC | 2 cut(s) | 222, 643 |
| MseI | TTAA | 3 cut(s) | 36, 113, 546 |
| MslI | CAYNNNNRTG | 1 cut(s) | 739 |
| MspCI | CTTAAG | 1 cut(s) | 35 |
| MspR9I | CCNGG | 1 cut(s) | 721 |
| MvaI | CCWGG | 1 cut(s) | 721 |
| MvnI | CGCG | 1 cut(s) | 406 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 95, 457, 692, 754 |
| NcoI | CCATGG | 1 cut(s) | 343 |
| NlaIII | CATG | 5 cut(s) | 142, 174, 347, 423, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 53 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| NspI | RCATGY | 3 cut(s) | 142, 174, 431 |
| PceI | AGGCCT | 1 cut(s) | 388 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 61 |
| PkrI | GCNGC | 2 cut(s) | 426, 469 |
| PleI | GAGTC | 2 cut(s) | 221, 643 |
| PpsI | GAGTC | 2 cut(s) | 221, 643 |
| PshBI | ATTAAT | 1 cut(s) | 546 |
| Psp6I | CCWGG | 1 cut(s) | 719 |
| PspGI | CCWGG | 1 cut(s) | 719 |
| PspN4I | GGNNCC | 1 cut(s) | 53 |
| PspPI | GGNCC | 1 cut(s) | 52 |
| PstNI | CAGNNNCTG | 1 cut(s) | 266 |
| RsaI | GTAC | 1 cut(s) | 771 |
| RsaNI | GTAC | 1 cut(s) | 770 |
| RseI | CAYNNNNRTG | 1 cut(s) | 739 |
| SaqAI | TTAA | 3 cut(s) | 36, 113, 546 |
| SatI | GCNGC | 2 cut(s) | 425, 468 |
| Sau96I | GGNCC | 1 cut(s) | 52 |
| SchI | GAGTC | 2 cut(s) | 222, 643 |
| ScrFI | CCNGG | 1 cut(s) | 721 |
| SduI | GDGCHC | 1 cut(s) | 204 |
| SetI | ASST | 8 cut(s) | 63, 103, 330, 370, 462, 606, 722, 766 |
| SfaNI | GCATC | 5 cut(s) | 55, 292, 307, 502, 647 |
| SinI | GGWCC | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 739 |
| SmlI | CTYRAG | 2 cut(s) | 35, 363 |
| SmoI | CTYRAG | 2 cut(s) | 35, 363 |
| Sse9I | AATT | 6 cut(s) | 78, 114, 223, 440, 622, 710 |
| SseBI | AGGCCT | 1 cut(s) | 388 |
| SsiI | CCGC | 2 cut(s) | 424, 660 |
| SspI | AATATT | 1 cut(s) | 72 |
| SspMI | CTAG | 2 cut(s) | 357, 521 |
| StuI | AGGCCT | 1 cut(s) | 388 |
| StyD4I | CCNGG | 1 cut(s) | 719 |
| StyI | CCWWGG | 2 cut(s) | 93, 343 |
| TaaI | ACNGT | 1 cut(s) | 276 |
| TaqI | TCGA | 3 cut(s) | 7, 216, 286 |
| TaqII | GACCGA | 1 cut(s) | 136 |
| TasI | AATT | 6 cut(s) | 78, 114, 223, 440, 622, 710 |
| TatI | WGTACW | 1 cut(s) | 769 |
| TauI | GCSGC | 1 cut(s) | 427 |
| Tru1I | TTAA | 3 cut(s) | 36, 113, 546 |
| Tru9I | TTAA | 3 cut(s) | 36, 113, 546 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 467 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 141, 408, 608, 689 |
| TspGWI | ACGGA | 1 cut(s) | 470 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 61 |
| Vha464I | CTTAAG | 1 cut(s) | 35 |
| VpaK11BI | GGWCC | 1 cut(s) | 52 |
| VspI | ATTAAT | 1 cut(s) | 546 |
| XapI | RAATTY | 3 cut(s) | 78, 223, 710 |
| XbaI | TCTAGA | 1 cut(s) | 520 |
| XceI | RCATGY | 3 cut(s) | 142, 174, 431 |
| XspI | CTAG | 2 cut(s) | 357, 521 |