ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 122 | 4.4e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 352 |
| AclWI | GGATC | 1 cut(s) | 240 |
| AfaI | GTAC | 3 cut(s) | 52, 461, 474 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 352 |
| AgsI | TTSAA | 6 cut(s) | 107, 184, 194, 214, 292, 457 |
| AjnI | CCWGG | 2 cut(s) | 243, 468 |
| AluBI | AGCT | 2 cut(s) | 128, 365 |
| AluI | AGCT | 2 cut(s) | 128, 365 |
| AlwI | GGATC | 1 cut(s) | 240 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 1 cut(s) | 319 |
| AsuII | TTCGAA | 1 cut(s) | 442 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 449 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 2 cut(s) | 5, 265 |
| BciT130I | CCWGG | 2 cut(s) | 245, 470 |
| BfaI | CTAG | 3 cut(s) | 125, 357, 374 |
| BglII | AGATCT | 1 cut(s) | 436 |
| BisI | GCNGC | 1 cut(s) | 71 |
| BlsI | GCNGC | 1 cut(s) | 72 |
| BmcAI | AGTACT | 1 cut(s) | 461 |
| Bme1390I | CCNGG | 2 cut(s) | 245, 470 |
| BmrFI | CCNGG | 2 cut(s) | 245, 470 |
| BmsI | GCATC | 1 cut(s) | 421 |
| Bpu14I | TTCGAA | 1 cut(s) | 442 |
| BsaBI | GATNNNNATC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 346 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 352 |
| Bse8I | GATNNNNATC | 1 cut(s) | 435 |
| BseBI | CCWGG | 2 cut(s) | 245, 470 |
| BseDI | CCNNGG | 2 cut(s) | 174, 346 |
| BseGI | GGATG | 3 cut(s) | 253, 280, 423 |
| BseJI | GATNNNNATC | 1 cut(s) | 435 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 352 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 352 |
| BsnI | GGCC | 1 cut(s) | 243 |
| Bsp119I | TTCGAA | 1 cut(s) | 442 |
| Bsp143I | GATC | 2 cut(s) | 232, 436 |
| Bsp19I | CCATGG | 1 cut(s) | 346 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspPI | GGATC | 1 cut(s) | 240 |
| BspT104I | TTCGAA | 1 cut(s) | 442 |
| BssECI | CCNNGG | 2 cut(s) | 174, 346 |
| BssMI | GATC | 2 cut(s) | 232, 436 |
| BssT1I | CCWWGG | 2 cut(s) | 174, 346 |
| Bst2UI | CCWGG | 2 cut(s) | 245, 470 |
| Bst4CI | ACNGT | 1 cut(s) | 55 |
| BstBI | TTCGAA | 1 cut(s) | 442 |
| BstDEI | CTNAG | 3 cut(s) | 27, 116, 132 |
| BstDSI | CCRYGG | 1 cut(s) | 346 |
| BstF5I | GGATG | 3 cut(s) | 253, 280, 423 |
| BstKTI | GATC | 2 cut(s) | 235, 439 |
| BstMBI | GATC | 2 cut(s) | 232, 436 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 134, 362 |
| BstNI | CCWGG | 2 cut(s) | 245, 470 |
| BstNSI | RCATGY | 3 cut(s) | 21, 209, 320 |
| BstSCI | CCNGG | 2 cut(s) | 243, 468 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstX2I | RGATCY | 1 cut(s) | 436 |
| BstYI | RGATCY | 1 cut(s) | 436 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtgI | CCRYGG | 1 cut(s) | 346 |
| BtsCI | GGATG | 3 cut(s) | 253, 280, 423 |
| BtsIMutI | CAGTG | 1 cut(s) | 259 |
| CsiI | ACCWGGT | 1 cut(s) | 468 |
| Csp6I | GTAC | 3 cut(s) | 51, 460, 473 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 21, 56 |
| CviAII | CATG | 5 cut(s) | 18, 206, 236, 317, 347 |
| CviJI | RGCY | 5 cut(s) | 128, 173, 243, 356, 365 |
| CviKI_1 | RGCY | 5 cut(s) | 128, 173, 243, 356, 365 |
| CviQI | GTAC | 3 cut(s) | 51, 460, 473 |
| DdeI | CTNAG | 3 cut(s) | 27, 116, 132 |
| DpnI | GATC | 2 cut(s) | 234, 438 |
| DpnII | GATC | 2 cut(s) | 232, 436 |
| Eco130I | CCWWGG | 2 cut(s) | 174, 346 |
| EcoRII | CCWGG | 2 cut(s) | 243, 468 |
| EcoT14I | CCWWGG | 2 cut(s) | 174, 346 |
| ErhI | CCWWGG | 2 cut(s) | 174, 346 |
| FaeI | CATG | 5 cut(s) | 21, 209, 239, 320, 350 |
| FaiI | YATR | 5 cut(s) | 19, 207, 237, 318, 348 |
| FatI | CATG | 5 cut(s) | 17, 205, 235, 316, 346 |
| Fnu4HI | GCNGC | 1 cut(s) | 71 |
| FokI | GGATG | 3 cut(s) | 260, 287, 430 |
| Fsp4HI | GCNGC | 1 cut(s) | 71 |
| FspBI | CTAG | 3 cut(s) | 125, 357, 374 |
| GluI | GCNGC | 1 cut(s) | 71 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| Hin1II | CATG | 5 cut(s) | 21, 209, 239, 320, 350 |
| HindIII | AAGCTT | 1 cut(s) | 363 |
| HinfI | GANTC | 2 cut(s) | 23, 370 |
| HphI | GGTGA | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 1 cut(s) | 63 |
| Hpy188III | TCNNGA | 1 cut(s) | 283 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 2 cut(s) | 17, 434 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 134, 362 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 116, 132 |
| Hsp92II | CATG | 5 cut(s) | 21, 209, 239, 320, 350 |
| Kzo9I | GATC | 2 cut(s) | 232, 436 |
| LpnPI | CCDG | 4 cut(s) | 230, 257, 268, 455 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 1 cut(s) | 421 |
| MabI | ACCWGGT | 1 cut(s) | 468 |
| MaeI | CTAG | 3 cut(s) | 125, 357, 374 |
| MalI | GATC | 2 cut(s) | 234, 438 |
| MboI | GATC | 2 cut(s) | 232, 436 |
| MboII | GAAGA | 2 cut(s) | 196, 431 |
| MflI | RGATCY | 1 cut(s) | 436 |
| MluCI | AATT | 5 cut(s) | 57, 81, 102, 287, 299 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 5 cut(s) | 127, 132, 250, 298, 391 |
| MseI | TTAA | 3 cut(s) | 80, 158, 411 |
| MspR9I | CCNGG | 2 cut(s) | 245, 470 |
| MvaI | CCWGG | 2 cut(s) | 245, 470 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 134, 362 |
| NcoI | CCATGG | 1 cut(s) | 346 |
| NdeII | GATC | 2 cut(s) | 232, 436 |
| NlaIII | CATG | 5 cut(s) | 21, 209, 239, 320, 350 |
| NspI | RCATGY | 3 cut(s) | 21, 209, 320 |
| NspV | TTCGAA | 1 cut(s) | 442 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 352 |
| PkrI | GCNGC | 1 cut(s) | 72 |
| PleI | GAGTC | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 378 |
| Psp6I | CCWGG | 2 cut(s) | 243, 468 |
| PspGI | CCWGG | 2 cut(s) | 243, 468 |
| PsuI | RGATCY | 1 cut(s) | 436 |
| RsaI | GTAC | 3 cut(s) | 52, 461, 474 |
| RsaNI | GTAC | 3 cut(s) | 51, 460, 473 |
| SaqAI | TTAA | 3 cut(s) | 80, 158, 411 |
| SatI | GCNGC | 1 cut(s) | 71 |
| Sau3AI | GATC | 2 cut(s) | 232, 436 |
| ScaI | AGTACT | 1 cut(s) | 461 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 2 cut(s) | 245, 470 |
| SetI | ASST | 9 cut(s) | 42, 52, 130, 261, 297, 309, 367, 402, 474 |
| SexAI | ACCWGGT | 1 cut(s) | 468 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfuI | TTCGAA | 1 cut(s) | 442 |
| Sse9I | AATT | 5 cut(s) | 57, 81, 102, 287, 299 |
| SspMI | CTAG | 3 cut(s) | 125, 357, 374 |
| StyD4I | CCNGG | 2 cut(s) | 243, 468 |
| StyI | CCWWGG | 2 cut(s) | 174, 346 |
| TaaI | ACNGT | 1 cut(s) | 55 |
| TaqI | TCGA | 2 cut(s) | 383, 442 |
| TasI | AATT | 5 cut(s) | 57, 81, 102, 287, 299 |
| TatI | WGTACW | 1 cut(s) | 459 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| Tru1I | TTAA | 3 cut(s) | 80, 158, 411 |
| Tru9I | TTAA | 3 cut(s) | 80, 158, 411 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TseI | GCWGC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 4 cut(s) | 291, 326, 368, 434 |
| TspRI | CASTG | 1 cut(s) | 259 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 352 |
| XceI | RCATGY | 3 cut(s) | 21, 209, 320 |
| XspI | CTAG | 3 cut(s) | 125, 357, 374 |
| ZrmI | AGTACT | 1 cut(s) | 461 |