Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 47 - 117 | 9.1e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 62 |
| AcoI | YGGCCR | 2 cut(s) | 30, 288 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 32 |
| AflIII | ACRYGT | 1 cut(s) | 350 |
| AgsI | TTSAA | 1 cut(s) | 324 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 33 |
| AjnI | CCWGG | 3 cut(s) | 267, 290, 304 |
| AluBI | AGCT | 3 cut(s) | 20, 63, 212 |
| AluI | AGCT | 3 cut(s) | 20, 63, 212 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| AlwI | GGATC | 1 cut(s) | 62 |
| AoxI | GGCC | 2 cut(s) | 30, 288 |
| AseI | ATTAAT | 1 cut(s) | 284 |
| AspS9I | GGNCC | 2 cut(s) | 35, 265 |
| AvaII | GGWCC | 2 cut(s) | 35, 265 |
| BalI | TGGCCA | 1 cut(s) | 290 |
| BccI | CCATC | 3 cut(s) | 67, 74, 248 |
| BceAI | ACGGC | 1 cut(s) | 45 |
| BciT130I | CCWGG | 3 cut(s) | 269, 292, 306 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| Bme1390I | CCNGG | 3 cut(s) | 269, 292, 306 |
| Bme18I | GGWCC | 2 cut(s) | 35, 265 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 2 cut(s) | 35, 265 |
| BmrFI | CCNGG | 3 cut(s) | 269, 292, 306 |
| BsaI | GGTCTC | 1 cut(s) | 125 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 32 |
| Bse118I | RCCGGY | 1 cut(s) | 32 |
| Bse1I | ACTGG | 1 cut(s) | 92 |
| BseBI | CCWGG | 3 cut(s) | 269, 292, 306 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 32 |
| BseNI | ACTGG | 1 cut(s) | 92 |
| BseX3I | CGGCCG | 1 cut(s) | 30 |
| Bsh1285I | CGRYCG | 1 cut(s) | 33 |
| BshFI | GGCC | 2 cut(s) | 32, 290 |
| BsiEI | CGRYCG | 1 cut(s) | 33 |
| BsiSI | CCGG | 1 cut(s) | 33 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsnI | GGCC | 2 cut(s) | 32, 290 |
| Bso31I | GGTCTC | 1 cut(s) | 125 |
| Bsp143I | GATC | 1 cut(s) | 67 |
| BspANI | GGCC | 2 cut(s) | 32, 290 |
| BspPI | GGATC | 1 cut(s) | 62 |
| BspQI | GCTCTTC | 1 cut(s) | 27 |
| BspTNI | GGTCTC | 1 cut(s) | 125 |
| BsrFI | RCCGGY | 1 cut(s) | 32 |
| BsrI | ACTGG | 1 cut(s) | 92 |
| BssAI | RCCGGY | 1 cut(s) | 32 |
| BssMI | GATC | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 3 cut(s) | 269, 292, 306 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 231 |
| BstKTI | GATC | 1 cut(s) | 70 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMBI | GATC | 1 cut(s) | 67 |
| BstMCI | CGRYCG | 1 cut(s) | 33 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 338 |
| BstNI | CCWGG | 3 cut(s) | 269, 292, 306 |
| BstNSI | RCATGY | 1 cut(s) | 354 |
| BstSCI | CCNGG | 3 cut(s) | 267, 290, 304 |
| BstZI | CGGCCG | 1 cut(s) | 30 |
| BsuRI | GGCC | 2 cut(s) | 32, 290 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| Cfr10I | RCCGGY | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 2 cut(s) | 35, 265 |
| CviAII | CATG | 2 cut(s) | 46, 351 |
| CviJI | RGCY | 6 cut(s) | 20, 32, 63, 150, 212, 290 |
| CviKI_1 | RGCY | 6 cut(s) | 20, 32, 63, 150, 212, 290 |
| DpnI | GATC | 1 cut(s) | 69 |
| DpnII | GATC | 1 cut(s) | 67 |
| DriI | GACNNNNNGTC | 1 cut(s) | 33 |
| EaeI | YGGCCR | 2 cut(s) | 30, 288 |
| EagI | CGGCCG | 1 cut(s) | 30 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 231 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 33 |
| EarI | CTCTTC | 2 cut(s) | 27, 231 |
| EclXI | CGGCCG | 1 cut(s) | 30 |
| Eco31I | GGTCTC | 1 cut(s) | 125 |
| Eco47I | GGWCC | 2 cut(s) | 35, 265 |
| Eco52I | CGGCCG | 1 cut(s) | 30 |
| EcoRII | CCWGG | 3 cut(s) | 267, 290, 304 |
| FaeI | CATG | 2 cut(s) | 49, 354 |
| FaiI | YATR | 7 cut(s) | 47, 59, 89, 300, 316, 318, 352 |
| FatI | CATG | 2 cut(s) | 45, 350 |
| HaeIII | GGCC | 2 cut(s) | 32, 290 |
| HapII | CCGG | 1 cut(s) | 33 |
| Hin1II | CATG | 2 cut(s) | 49, 354 |
| HindIII | AAGCTT | 1 cut(s) | 61 |
| HpaII | CCGG | 1 cut(s) | 33 |
| Hpy188I | TCNGA | 2 cut(s) | 27, 72 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 324 |
| Hpy99I | CGWCG | 1 cut(s) | 31 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 338 |
| Hsp92II | CATG | 2 cut(s) | 49, 354 |
| Kzo9I | GATC | 1 cut(s) | 67 |
| LguI | GCTCTTC | 1 cut(s) | 27 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| MalI | GATC | 1 cut(s) | 69 |
| MboI | GATC | 1 cut(s) | 67 |
| MboII | GAAGA | 3 cut(s) | 14, 245, 248 |
| MfeI | CAATTG | 1 cut(s) | 124 |
| MlsI | TGGCCA | 1 cut(s) | 290 |
| MluCI | AATT | 2 cut(s) | 124, 218 |
| MluNI | TGGCCA | 1 cut(s) | 290 |
| MmeI | TCCRAC | 1 cut(s) | 50 |
| MnlI | CCTC | 4 cut(s) | 44, 48, 173, 322 |
| Mox20I | TGGCCA | 1 cut(s) | 290 |
| MscI | TGGCCA | 1 cut(s) | 290 |
| MseI | TTAA | 3 cut(s) | 276, 284, 373 |
| Msp20I | TGGCCA | 1 cut(s) | 290 |
| MspI | CCGG | 1 cut(s) | 33 |
| MspR9I | CCNGG | 3 cut(s) | 269, 292, 306 |
| MunI | CAATTG | 1 cut(s) | 124 |
| MvaI | CCWGG | 3 cut(s) | 269, 292, 306 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 338 |
| NdeII | GATC | 1 cut(s) | 67 |
| NlaIII | CATG | 2 cut(s) | 49, 354 |
| NspI | RCATGY | 1 cut(s) | 354 |
| PciI | ACATGT | 1 cut(s) | 350 |
| PciSI | GCTCTTC | 1 cut(s) | 27 |
| PfoI | TCCNGGA | 1 cut(s) | 267 |
| PscI | ACATGT | 1 cut(s) | 350 |
| PshBI | ATTAAT | 1 cut(s) | 284 |
| Psp6I | CCWGG | 3 cut(s) | 267, 290, 304 |
| PspGI | CCWGG | 3 cut(s) | 267, 290, 304 |
| PspPI | GGNCC | 2 cut(s) | 35, 265 |
| SapI | GCTCTTC | 1 cut(s) | 27 |
| SaqAI | TTAA | 3 cut(s) | 276, 284, 373 |
| Sau3AI | GATC | 1 cut(s) | 67 |
| Sau96I | GGNCC | 2 cut(s) | 35, 265 |
| ScrFI | CCNGG | 3 cut(s) | 269, 292, 306 |
| SetI | ASST | 9 cut(s) | 22, 65, 121, 175, 184, 190, 214, 296, 310 |
| SinI | GGWCC | 2 cut(s) | 35, 265 |
| Sse9I | AATT | 2 cut(s) | 124, 218 |
| StyD4I | CCNGG | 3 cut(s) | 267, 290, 304 |
| TasI | AATT | 2 cut(s) | 124, 218 |
| Tru1I | TTAA | 3 cut(s) | 276, 284, 373 |
| Tru9I | TTAA | 3 cut(s) | 276, 284, 373 |
| TscAI | CASTG | 1 cut(s) | 99 |
| TspDTI | ATGAA | 4 cut(s) | 34, 117, 147, 287 |
| TspRI | CASTG | 1 cut(s) | 99 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 265 |
| VspI | ATTAAT | 1 cut(s) | 284 |
| XceI | RCATGY | 1 cut(s) | 354 |