Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 31 - 115 | 2.1e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AciI | CCGC | 4 cut(s) | 35, 176, 187, 344 |
| AcvI | CACGTG | 1 cut(s) | 26 |
| AdeI | CACNNNGTG | 1 cut(s) | 29 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AflIII | ACRYGT | 1 cut(s) | 23 |
| AgsI | TTSAA | 1 cut(s) | 41 |
| AjnI | CCWGG | 3 cut(s) | 73, 112, 243 |
| AluBI | AGCT | 2 cut(s) | 223, 275 |
| AluI | AGCT | 2 cut(s) | 223, 275 |
| Alw26I | GTCTC | 2 cut(s) | 2, 12 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 1 cut(s) | 184 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| BanII | GRGCYC | 1 cut(s) | 124 |
| BbrPI | CACGTG | 1 cut(s) | 26 |
| BbvI | GCAGC | 1 cut(s) | 196 |
| BccI | CCATC | 3 cut(s) | 76, 92, 341 |
| BciT130I | CCWGG | 3 cut(s) | 75, 114, 245 |
| BcoDI | GTCTC | 2 cut(s) | 2, 12 |
| BisI | GCNGC | 1 cut(s) | 185 |
| BlsI | GCNGC | 1 cut(s) | 186 |
| Bme1390I | CCNGG | 3 cut(s) | 75, 114, 245 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 3 cut(s) | 75, 114, 245 |
| BpmI | CTGGAG | 4 cut(s) | 57, 135, 266, 320 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BsaAI | YACGTR | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseBI | CCWGG | 3 cut(s) | 75, 114, 245 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseXI | GCAGC | 1 cut(s) | 196 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BslFI | GGGAC | 1 cut(s) | 46 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 2 cut(s) | 2, 12 |
| BsmFI | GGGAC | 1 cut(s) | 46 |
| BsmI | GAATGC | 1 cut(s) | 338 |
| BsnI | GGCC | 1 cut(s) | 243 |
| Bsp1286I | GDGCHC | 1 cut(s) | 124 |
| BspACI | CCGC | 4 cut(s) | 35, 176, 187, 344 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| Bst2UI | CCWGG | 3 cut(s) | 75, 114, 245 |
| Bst4CI | ACNGT | 1 cut(s) | 45 |
| BstBAI | YACGTR | 1 cut(s) | 26 |
| BstDEI | CTNAG | 2 cut(s) | 123, 321 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstMAI | GTCTC | 2 cut(s) | 2, 12 |
| BstNI | CCWGG | 3 cut(s) | 75, 114, 245 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSCI | CCNGG | 3 cut(s) | 73, 112, 243 |
| BstV1I | GCAGC | 1 cut(s) | 196 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| CviAII | CATG | 2 cut(s) | 337, 360 |
| CviJI | RGCY | 7 cut(s) | 51, 122, 140, 223, 243, 267, 275 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 122, 140, 223, 243, 267, 275 |
| DdeI | CTNAG | 2 cut(s) | 123, 321 |
| DraIII | CACNNNGTG | 1 cut(s) | 29 |
| Eco24I | GRGCYC | 1 cut(s) | 124 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| Eco72I | CACGTG | 1 cut(s) | 26 |
| EcoRII | CCWGG | 3 cut(s) | 73, 112, 243 |
| EcoT22I | ATGCAT | 1 cut(s) | 338 |
| EcoT38I | GRGCYC | 1 cut(s) | 124 |
| FaeI | CATG | 2 cut(s) | 340, 363 |
| FaiI | YATR | 5 cut(s) | 80, 213, 314, 338, 361 |
| FaqI | GGGAC | 1 cut(s) | 46 |
| FatI | CATG | 2 cut(s) | 336, 359 |
| Fnu4HI | GCNGC | 1 cut(s) | 185 |
| FokI | GGATG | 1 cut(s) | 359 |
| FriOI | GRGCYC | 1 cut(s) | 124 |
| Fsp4HI | GCNGC | 1 cut(s) | 185 |
| GluI | GCNGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 4 cut(s) | 57, 135, 266, 320 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| Hin1II | CATG | 2 cut(s) | 340, 363 |
| Hpy188I | TCNGA | 1 cut(s) | 149 |
| Hpy188III | TCNNGA | 1 cut(s) | 299 |
| HpyAV | CCTTC | 1 cut(s) | 256 |
| HpyCH4III | ACNGT | 1 cut(s) | 45 |
| HpyCH4IV | ACGT | 1 cut(s) | 25 |
| HpyCH4V | TGCA | 3 cut(s) | 230, 336, 359 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 321 |
| HpySE526I | ACGT | 1 cut(s) | 25 |
| Hsp92II | CATG | 2 cut(s) | 340, 363 |
| LmnI | GCTCC | 1 cut(s) | 32 |
| Lsp1109I | GCAGC | 1 cut(s) | 196 |
| MaeII | ACGT | 1 cut(s) | 25 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboII | GAAGA | 1 cut(s) | 341 |
| MhlI | GDGCHC | 1 cut(s) | 124 |
| MluCI | AATT | 4 cut(s) | 81, 91, 231, 237 |
| MnlI | CCTC | 5 cut(s) | 75, 110, 216, 295, 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 338 |
| MseI | TTAA | 3 cut(s) | 84, 198, 234 |
| MspA1I | CMGCKG | 2 cut(s) | 187, 344 |
| MspR9I | CCNGG | 3 cut(s) | 75, 114, 245 |
| Mva1269I | GAATGC | 1 cut(s) | 338 |
| MvaI | CCWGG | 3 cut(s) | 75, 114, 245 |
| NlaIII | CATG | 2 cut(s) | 340, 363 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| NsiI | ATGCAT | 1 cut(s) | 338 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 338 |
| PfoI | TCCNGGA | 1 cut(s) | 112 |
| PkrI | GCNGC | 1 cut(s) | 186 |
| PmaCI | CACGTG | 1 cut(s) | 26 |
| PmlI | CACGTG | 1 cut(s) | 26 |
| Ppu21I | YACGTR | 1 cut(s) | 26 |
| Psp6I | CCWGG | 3 cut(s) | 73, 112, 243 |
| PspCI | CACGTG | 1 cut(s) | 26 |
| PspGI | CCWGG | 3 cut(s) | 73, 112, 243 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| SaqAI | TTAA | 3 cut(s) | 84, 198, 234 |
| SatI | GCNGC | 1 cut(s) | 185 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 3 cut(s) | 75, 114, 245 |
| SduI | GDGCHC | 1 cut(s) | 124 |
| SetI | ASST | 7 cut(s) | 28, 79, 129, 163, 225, 277, 306 |
| SinI | GGWCC | 1 cut(s) | 60 |
| Sse9I | AATT | 4 cut(s) | 81, 91, 231, 237 |
| SsiI | CCGC | 4 cut(s) | 35, 176, 187, 344 |
| SspI | AATATT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 3 cut(s) | 73, 112, 243 |
| TaaI | ACNGT | 1 cut(s) | 45 |
| TaiI | ACGT | 1 cut(s) | 28 |
| TasI | AATT | 4 cut(s) | 81, 91, 231, 237 |
| Tru1I | TTAA | 3 cut(s) | 84, 198, 234 |
| Tru9I | TTAA | 3 cut(s) | 84, 198, 234 |
| TseI | GCWGC | 1 cut(s) | 184 |
| TspDTI | ATGAA | 2 cut(s) | 17, 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XceI | RCATGY | 1 cut(s) | 340 |
| Zsp2I | ATGCAT | 1 cut(s) | 338 |