Rorug04G0026900

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000072
Physical Location & Seq
Forward (+)
3692258 .. 3700698
8441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0026900.1

Sequence Viewer

Length: 4335 bp
ATGGAGCAAAGCAAGTTCTTCATCTTCTTCCCTCCCAATGAAGCAGCAGCCAGTTCTTCATCTTCTTCTCTCCCACGTTCTTCTGCTGATCACCAAAATCATTACACATACGAGGTCTTCCTGAGTTTTCGAGGCGAAGATACACGCTTTAATTTTACTGATCATTTGTATACTGCTCTGTGTCAGAGGGGAATTGAGACCTTCAGAGATGATAAGCTGAGCAGAGGAGAAGACATATCACAAGAGCTCCTCAAAGCAATTGAGGAGTCCAGAGTTTCAATCGTCGTCTTCTCTCAAAATTATGCTTCCTCAAGGTGGTGCTTAGATGAACTGGTCAAGATACTTGACTGCAGAAAATCCAAAGGACAGAAGTTTAGAGCTGTTTTCTACAAGGTGGCTCCCTCAGATGTACGACACCAAACAGGTGCTTTCGGTGACGCATTTGCTAAAATTGATCAATGCAAATACGAGGATAGCATCGGCAAATGGAGGAAGGCTCTTGAGGAAGCAGCAGATTTGTCTGGATGGACTTTCGAGGAGGGCCGGTACGAGACTGAATTTATCAAAGAAATTGTTGAGGATTTGTTCACCCGAGTAATAAATCCTTCATGTGAGTTGCACGTTGCTGAACATCCAATTGGCTTAGGGTCTTGTAGACAAGACGTCAACAAACTTTTAGATGCCGATGAGAATAACATGGTTGGCATATGGGGGCCTGGTGGAATAGGAAAGACTACAATTGCGAAGGATGTGTTTAATTCAATTCGCCATAAGTTTGAAGGTAGCTGTTTCTTGGCGGATGTTAGATCAAAAGGCATAACCCAACTGCAAGAGACACTTTTGTCTCATATATTAAACTCAACTTTGAAGGTGGACAGTGTTGATGAAGGACTCAGTTTTATAAAGACAAGGATGCGAAATAAAAAAGTTCTCTTAATTCTTGATGACGTGAGTCATTCTAGCCAATTACAGAGCTTAGTTCCATCCCCTGATTGTTTTGGCCCGGGCAGTAGAATTCTCATAACAACAAGAGATAAACGTTGGCTAATTGCTCATGAAGTTAATGAAGTATATGAGGTCAAGATGTTAGATGATCGTCATGCTTTGGAGTTGTTTAGCTTGCATGCATTCAAAAGAAATGAACCTCCAAGCGATTATCTAGAACTTGCACAACGTGCGGTACGCTATGCCCAGGGCCTTCCATTAGCTTTGATAGTTTTAGGCTCTCATCTATTTCGTAGAAGCAGAGAGGAGTGGGAAGCTACATTAGATAGTTGTAGGGGAGAAGATCCCCACAGAGAGATAAGAGACATTCTCAAAATAAGTTATGATGCTCTGGGAGTAGATTTAAAAGGATATTTTCTTGATATCGCTTGTTTCTTTAAAGGGAAGCATGTAGACCGTGTGAAACCAATACTAGAAGCTTGCTACGACCTCAAATCAGTGATTGGTATTAAACAACTCCAAGAAAAGGCCTTAATAAGAATTGACGATAAGACTTATAAGCTGGATGGAACAAAAACAGGGGTGATTTGGATGCATGACTTGATAGAAGAAATGGGTAAAGACATAGTGTATCAGGAGTCACCTGATGAACCCGGGAAACGCAGCAGACTGTGGAGTGAAGAAGATGTAGACTACGTTCTTACAAATAATACAGGTACAAATAAAGTTATAGGCATTCAGGGCATTGAGGTCCCGTGGCGATTATCTACAATGTCTTTATCTACAATATCTTTGAATGCTAAAAGCTTTTCAGAGATGAAGAATCTTAGATATATTTCTATGAGAAGTATATCCTTTTCTGGAGATATTGATTATCTCTCCAACCAGTTGAGGTGGCTCGATTGGCAAGCATGTCCGTTGCAATGTTTTCCATCCGATTTTCAAGCAAACAAACTTGTGGAGCTCAACATTAGAAGGGGCAAAATCAGACGACTATGGGAGGGACGTAAGAATTTTTCAAGGCTAACATGTATGGATTTAAGTTATTGTACATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTAAGTTGTTGTGAATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTAAGTGGCTGTGCATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGATAGAGTTGAATTTAAGTGGCTGTGCATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTAAGTGGCTGTAAATCCCTAAAGGAACTCCCATACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTACGTGGCTGTACATCCCTAAAGGAACTCCCAAACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTATGTGGCTGTACATCCCTAAAGAAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTAATTGGCTGTACATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTAAGTTGTTGTGAATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCTTGACTTGAAAGAGTTGAATTTAAGTGGCTGTGAATCCCTAAAGGAACTCCCAAACTTGAGTGGAATCCCTAACTTGAAAGGGTTGAATTTAATTGGATGTGTATCCCTAGAGGAACTCCCATACTTGAGTGGAATCTCTAACTTGAAAGAGTTGAATTTACGTGGCTGTACATCCCTAAAAGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGAATTTACGTGGCTGTACATCCCTAAAGAAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGAGTTGTATTTAATTGGCTGTACATCCCTAAAGGAACTCCCAGACTTGAGTGGAATCCCTAACTTGAAAGGGTTGCATTTACGTGACTGTAAATCCCTAAAGGAACTCCCAGACTTGAGTGGACTCTCAAACTTGAAAGGGTTGAATTTACGTGGCTGTACATCCCTAAAGGAACTCCCAGAATTGAGTGGAATCCCTGACTTGATAGGGTTGAATTTAAGTGGTTGTACATCCCTAAAGGAACTCCCAGAATTGAGAGGAATCCCTGACTTGATAGGGTTGAATTTAAGTGGTTGTACATCCCTAGAGGAACTCCCAGACTTGAGTGGAATCCCTGACTTGAAAGCGTTGAATTTAAGTTATTGTACATCCCTAAAGAAACTCCCAGACTTGAGTGGAATCCCTGACTTGAAAGAGTCGAATCTATCTGACTGTACCAGTTTAGTTGAGGTTCCTGATTCTGTTGGATTGCTTGATAAACTTGTTACCTTGAATGTTGACTATTGCCATAACCTTATTATGTTTCCAAGAAAAATCAACTTGAAATCTGTAGAAACAATCTCTATTAGCTATTGCAAGCTTGAAGAATTTTCAGAAGTTGGGGAAGAGATGGGTTTCTTGAGAAAATTGGATATGAGAGGCACTTGCATTAAAGAATTGCATCCGTCCATTACAAGGCTTATTAGGCTGGAAAAGTTGGACCTAACGGATAGTCAAAATCTTACAATCCTGCCATATAATATTTATGAGTTGCACAATCTAAAGACTCTTGATGTGAGTAAATGCTCAAAACTGGCTACGTTTCCAAAAATTCCAGTAAAGATGGATTCCTTGAAACATCTTTGTTTTAAAGGCAGTGACATAAGAGAATTGGATGAGTCAATTGGAAATCTCACTGGGCTTGAAGAGTTGGATCTTGGTTATTGCAAAAATCTCACAACTCTACCGTGCAGCATTTATGGGTTGCAAAATTTACGGTTTCTTGGTCTTGCTGGATGCTCAAAATTTGTCAGATTTCCAACAAATACCAAAATTTTGAATGTCGATGGTTGCTCACTATCACTTCCCAATCTACAGGTGCTCGTTATCGCAGGATGCAGTTTATTATCAGATTGTGATTTCCTGACGACTCTTGATTGCTGGGAAACATTATGGTGGCTTAATCTGTCAAGAAACAATTTTGTTAGTCTTCCTGCTTGCCTCACCAAATTTGTCAACTTGGGGTGGCTTGACTTGCGGGGTTGCAAGAGACTCCGAGGAATTCCGGAGCTTCCACCAAACGTTCAACCATACATAAGTGGTCGTGAATTCCTGGAGGAGAGATTCTCGACATTGAGGCGGCATGGAGCTGTGATAGAGGCGGCGTCGCCGTCAATTGAAGAGCCAACTCCGTCGTCATGGCTTTCTTTGTCGTCATGGACAAGTTGTTTCAGCTTTCTCTCTCTACGGAACCGACACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1444

Amino Acids

161.54

Weight (kDa)

5.79

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 37 - 198 4.7e-55 TIR domain
TIR_2 PF13676 39 - 133 1.2e-14 TIR domain
NB-ARC PF00931 222 - 380 1.8e-23 NB-ARC domain
WHD_ROQ1 PF23282 451 - 529 9.2e-11 Disease resistance protein Roq1-like, winged-helix domain
LRR_4 PF12799 701 - 744 9.9e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 724 - 764 6.6e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 747 - 790 6.5e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 770 - 813 3.9e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 909 - 951 4.7e-06 Leucine Rich repeats (2 copies)
LRR_4 PF12799 931 - 974 2.3e-06 Leucine Rich repeats (2 copies)
LRR_13 PF23286 1138 - 1222 3.4e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1164 - 1239 2.7e-06 Leucine-rich repeat region
LRR_Zer-1 PF25013 1164 - 1288 6.2e-07 Zer-1-like, Leucine-rich repeats
LRR_13 PF23286 1209 - 1380 2.8e-20 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1234 - 1292 8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 902, 1503
AasI GACNNNNNNGTC 1 cut(s) 841
AatII GACGTC 1 cut(s) 666
AccI GTMKAC 4 cut(s) 170, 655, 1398, 1635
AccIII TCCGGA 1 cut(s) 4135
AciI CCGC 5 cut(s) 797, 1178, 4108, 4210, 4232
AclI AACGTT 2 cut(s) 1039, 4152
AclWI GGATC 2 cut(s) 1283, 3792
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 663, 4235
AdeI CACNNNGTG 1 cut(s) 1175
AfiI CCNNNNNNNGG 3 cut(s) 315, 1471, 3546
AflIII ACRYGT 1 cut(s) 1973
AhdI GACNNNNNGTC 1 cut(s) 662
AjiI CACGTC 1 cut(s) 949
AjnI CCWGG 3 cut(s) 715, 1191, 4182
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
Alw21I GWGCWC 3 cut(s) 249, 1911, 3954
Alw26I GTCTC 6 cut(s) 191, 545, 827, 849, 1302, 4114
AlwI GGATC 2 cut(s) 1283, 3792
Ama87I CYCGRG 3 cut(s) 591, 1003, 1598
Aor13HI TCCGGA 1 cut(s) 4135
AoxI GGCC 5 cut(s) 541, 713, 1000, 1195, 1473
ApeKI GCWGC 5 cut(s) 44, 47, 509, 1608, 3822
AspS9I GGNCC 6 cut(s) 541, 713, 1001, 1195, 1696, 3571
AsuC2I CCSGG 4 cut(s) 1004, 1005, 1599, 1600
AsuHPI GGTGA 6 cut(s) 83, 446, 580, 1540, 1578, 4066
AvaI CYCGRG 3 cut(s) 591, 1003, 1598
AvaII GGWCC 2 cut(s) 1696, 3571
BanII GRGCYC 2 cut(s) 249, 1911
BbsI GAAGAC 4 cut(s) 109, 237, 280, 4052
Bbv12I GWGCWC 3 cut(s) 249, 1911, 3954
BbvI GCAGC 5 cut(s) 56, 59, 521, 1620, 3834
BccI CCATC 7 cut(s) 519, 991, 1505, 1885, 3475, 3688, 3911
BceAI ACGGC 1 cut(s) 4225
BciT130I CCWGG 3 cut(s) 717, 1193, 4184
BciVI GTATCC 1 cut(s) 2698
BclI TGATCA 3 cut(s) 88, 160, 454
BcnI CCSGG 4 cut(s) 1004, 1005, 1599, 1600
BcoDI GTCTC 6 cut(s) 191, 545, 827, 849, 1302, 4114
BfaI CTAG 5 cut(s) 960, 1160, 1418, 2693, 3176
BfmI CTRYAG 3 cut(s) 349, 3420, 3944
BfuI GTATCC 1 cut(s) 2698
BisI GCNGC 7 cut(s) 45, 48, 510, 1609, 3823, 4211, 4233
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 7 cut(s) 46, 49, 511, 1610, 3824, 4212, 4234
Bme1390I CCNGG 7 cut(s) 717, 1004, 1005, 1193, 1599, 1600, 4184
Bme18I GGWCC 2 cut(s) 1696, 3571
BmeRI GACNNNNNGTC 1 cut(s) 662
BmeT110I CYCGRG 3 cut(s) 591, 1003, 1598
BmgBI CACGTC 1 cut(s) 949
BmgT120I GGNCC 6 cut(s) 541, 713, 1001, 1195, 1696, 3571
BmiI GGNNCC 5 cut(s) 399, 714, 1698, 3324, 4322
BmrFI CCNGG 7 cut(s) 717, 1004, 1005, 1193, 1599, 1600, 4184
BmrI ACTGGG 1 cut(s) 3777
BmuI ACTGGG 1 cut(s) 3777
BoxI GACNNNNGTC 1 cut(s) 951
BpiI GAAGAC 4 cut(s) 109, 237, 280, 4052
BplI GAGNNNNNCTC 6 cut(s) 481, 513, 1299, 1331, 4181, 4213
BpmI CTGGAG 2 cut(s) 1827, 4205
Bpu10I CCTNAGC 1 cut(s) 643
Bpu1102I GCTNAGC 1 cut(s) 218
BpuMI CCSGG 4 cut(s) 1004, 1005, 1599, 1600
BsaAI YACGTR 5 cut(s) 2333, 2747, 2816, 2954, 3023
BsaBI GATNNNNATC 1 cut(s) 2686
BsaHI GRCGYC 2 cut(s) 663, 4235
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 1003, 1191, 1192, 1598, 1700, 4126
BsaWI WCCGGW 1 cut(s) 4135
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 530, 560
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 1471, 3546
Bse118I RCCGGY 1 cut(s) 543
Bse1I ACTGG 7 cut(s) 51, 336, 1831, 3309, 3669, 3686, 3772
Bse3DI GCAATG 1 cut(s) 1874
Bse8I GATNNNNATC 1 cut(s) 2686
BseAI TCCGGA 1 cut(s) 4135
BseBI CCWGG 3 cut(s) 717, 1193, 4184
BseDI CCNNGG 6 cut(s) 1003, 1191, 1192, 1598, 1700, 4126
BseJI GATNNNNATC 1 cut(s) 2686
BseLI CCNNNNNNNGG 3 cut(s) 315, 1471, 3546
BseMI GCAATG 1 cut(s) 1874
BseMII CTCAG 4 cut(s) 113, 209, 417, 907
BseNI ACTGG 7 cut(s) 51, 336, 1831, 3309, 3669, 3686, 3772
BseRI GAGGAG 6 cut(s) 239, 240, 278, 551, 1265, 4202
BseXI GCAGC 5 cut(s) 56, 59, 521, 1620, 3834
BseYI CCCAGC 1 cut(s) 4011
BsgI GTGCAG 1 cut(s) 3841
BshFI GGCC 5 cut(s) 543, 715, 1002, 1197, 1475
BsiHKAI GWGCWC 3 cut(s) 249, 1911, 3954
BsiHKCI CYCGRG 3 cut(s) 591, 1003, 1598
BsiSI CCGG 4 cut(s) 544, 1004, 1599, 4136
BslFI GGGAC 2 cut(s) 1682, 1962
BslI CCNNNNNNNGG 3 cut(s) 315, 1471, 3546
BsmAI GTCTC 6 cut(s) 191, 545, 827, 849, 1302, 4114
BsmFI GGGAC 2 cut(s) 1682, 1962
BsmI GAATGC 3 cut(s) 1127, 1680, 1747
BsnI GGCC 5 cut(s) 543, 715, 1002, 1197, 1475
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 3 cut(s) 591, 1003, 1598
Bsp1286I GDGCHC 3 cut(s) 249, 1911, 3954
Bsp13I TCCGGA 1 cut(s) 4135
Bsp143I GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 5 cut(s) 797, 1178, 4108, 4210, 4232
BspANI GGCC 5 cut(s) 543, 715, 1002, 1197, 1475
BspCNI CTCAG 4 cut(s) 114, 210, 416, 906
BspEI TCCGGA 1 cut(s) 4135
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 5 cut(s) 399, 714, 1698, 3324, 4322
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 2 cut(s) 1283, 3792
BspQI GCTCTTC 1 cut(s) 4245
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 1874
BsrFI RCCGGY 1 cut(s) 543
BsrI ACTGG 7 cut(s) 51, 336, 1831, 3309, 3669, 3686, 3772
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 6 cut(s) 1003, 1191, 1192, 1598, 1700, 4126
BssMI GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
BssNAI GTATAC 1 cut(s) 171
BssNI GRCGYC 2 cut(s) 663, 4235
Bst1107I GTATAC 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 717, 1193, 4184
Bst4CI ACNGT 7 cut(s) 878, 1403, 1617, 2960, 3305, 3819, 3849
Bst6I CTCTTC 3 cut(s) 3471, 3771, 4245
BstACI GRCGYC 2 cut(s) 663, 4235
BstAPI GCANNNNNTGC 1 cut(s) 1175
BstBAI YACGTR 5 cut(s) 2333, 2747, 2816, 2954, 3023
BstC8I GCNNGC 6 cut(s) 1121, 1125, 1426, 1854, 3449, 4069
BstDEI CTNAG 8 cut(s) 122, 218, 322, 403, 643, 893, 976, 1772
BstDSI CCRYGG 1 cut(s) 1700
BstKTI GATC 7 cut(s) 91, 163, 457, 809, 1096, 1291, 3787
BstMAI GTCTC 6 cut(s) 191, 545, 827, 849, 1302, 4114
BstMBI GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
BstMWI GCNNNNNNNGC 5 cut(s) 1175, 1686, 1849, 3556, 4105
BstNI CCWGG 3 cut(s) 717, 1193, 4184
BstNSI RCATGY 4 cut(s) 1127, 1397, 1860, 1977
BstPAI GACNNNNGTC 1 cut(s) 951
BstSCI CCNGG 7 cut(s) 715, 1002, 1003, 1191, 1597, 1598, 4182
BstSFI CTRYAG 3 cut(s) 349, 3420, 3944
BstV1I GCAGC 5 cut(s) 56, 59, 521, 1620, 3834
BstV2I GAAGAC 4 cut(s) 109, 237, 280, 4052
BstX2I RGATCY 2 cut(s) 1288, 3784
BstYI RGATCY 2 cut(s) 1288, 3784
BstZ17I GTATAC 1 cut(s) 171
BsuI GTATCC 1 cut(s) 2698
BsuRI GGCC 5 cut(s) 543, 715, 1002, 1197, 1475
BtgI CCRYGG 1 cut(s) 1700
BtrI CACGTC 1 cut(s) 949
BtsI GCAGTG 1 cut(s) 3733
BtsIMutI CAGTG 4 cut(s) 883, 1449, 3733, 3765
Cac8I GCNNGC 6 cut(s) 1121, 1125, 1426, 1854, 3449, 4069
CciI TCATGA 1 cut(s) 1054
Cfr10I RCCGGY 1 cut(s) 543
Cfr13I GGNCC 6 cut(s) 541, 713, 1001, 1195, 1696, 3571
Cfr9I CCCGGG 2 cut(s) 1003, 1598
CseI GACGC 2 cut(s) 446, 4224
DdeI CTNAG 8 cut(s) 122, 218, 322, 403, 643, 893, 976, 1772
DpnI GATC 7 cut(s) 90, 162, 456, 808, 1095, 1290, 3786
DpnII GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
DraI TTTAAA 3 cut(s) 1350, 1384, 3721
DraIII CACNNNGTG 1 cut(s) 1175
DrdI GACNNNNNNGTC 1 cut(s) 841
DriI GACNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 841
Eam1104I CTCTTC 3 cut(s) 3471, 3771, 4245
Eam1105I GACNNNNNGTC 1 cut(s) 662
EarI CTCTTC 3 cut(s) 3471, 3771, 4245
EciI GGCGGA 1 cut(s) 812
Ecl136II GAGCTC 2 cut(s) 247, 1909
Eco147I AGGCCT 1 cut(s) 1475
Eco24I GRGCYC 2 cut(s) 249, 1911
Eco31I GGTCTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 1369
Eco47I GGWCC 2 cut(s) 1696, 3571
Eco53kI GAGCTC 2 cut(s) 247, 1909
Eco57I CTGAAG 1 cut(s) 187
Eco88I CYCGRG 3 cut(s) 591, 1003, 1598
EcoICRI GAGCTC 2 cut(s) 247, 1909
EcoO109I RGGNCCY 3 cut(s) 713, 1195, 1696
EcoRI GAATTC 3 cut(s) 1014, 4131, 4178
EcoRII CCWGG 3 cut(s) 715, 1191, 4182
EcoRV GATATC 1 cut(s) 1369
EcoT22I ATGCAT 2 cut(s) 1129, 1542
EcoT38I GRGCYC 2 cut(s) 249, 1911
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 1682, 1962
FauI CCCGC 1 cut(s) 4101
FauNDI CATATG 1 cut(s) 707
FbaI TGATCA 3 cut(s) 88, 160, 454
FblI GTMKAC 4 cut(s) 170, 655, 1398, 1635
Fnu4HI GCNGC 7 cut(s) 45, 48, 510, 1609, 3823, 4211, 4233
FriOI GRGCYC 2 cut(s) 249, 1911
Fsp4HI GCNGC 7 cut(s) 45, 48, 510, 1609, 3823, 4211, 4233
FspBI CTAG 5 cut(s) 960, 1160, 1418, 2693, 3176
GluI GCNGC 7 cut(s) 45, 48, 510, 1609, 3823, 4211, 4233
GsaI CCCAGC 1 cut(s) 4015
GsuI CTGGAG 2 cut(s) 1827, 4205
HaeIII GGCC 5 cut(s) 543, 715, 1002, 1197, 1475
HapII CCGG 4 cut(s) 544, 1004, 1599, 4136
HgaI GACGC 2 cut(s) 446, 4224
Hin1I GRCGYC 2 cut(s) 663, 4235
HincII GTYRAC 3 cut(s) 667, 3370, 4087
HindII GTYRAC 3 cut(s) 667, 3370, 4087
HindIII AAGCTT 3 cut(s) 1422, 1750, 3449
HpaII CCGG 4 cut(s) 544, 1004, 1599, 4136
HphI GGTGA 6 cut(s) 83, 446, 580, 1540, 1578, 4066
Hpy99I CGWCG 3 cut(s) 287, 4240, 4267
HpyAV CCTTC 9 cut(s) 211, 487, 615, 739, 773, 862, 881, 1208, 1914
HpyCH4III ACNGT 7 cut(s) 878, 1403, 1617, 2960, 3305, 3819, 3849
HpyF10VI GCNNNNNNNGC 5 cut(s) 1175, 1686, 1849, 3556, 4105
HpyF3I CTNAG 8 cut(s) 122, 218, 322, 403, 643, 893, 976, 1772
Hsp92I GRCGYC 2 cut(s) 663, 4235
Kpn2I TCCGGA 1 cut(s) 4135
Ksp22I TGATCA 3 cut(s) 88, 160, 454
Kzo9I GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
LguI GCTCTTC 1 cut(s) 4245
LmnI GCTCC 6 cut(s) 4, 252, 403, 1906, 4138, 4217
Lsp1109I GCAGC 5 cut(s) 56, 59, 521, 1620, 3834
MaeI CTAG 5 cut(s) 960, 1160, 1418, 2693, 3176
MaeIII GTNAC 5 cut(s) 434, 1584, 2954, 3355, 3728
MalI GATC 7 cut(s) 90, 162, 456, 808, 1095, 1290, 3786
MboI GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
MfeI CAATTG 5 cut(s) 258, 636, 738, 3753, 4245
MflI RGATCY 2 cut(s) 1288, 3784
MhlI GDGCHC 3 cut(s) 249, 1911, 3954
MmeI TCCRAC 5 cut(s) 1851, 3316, 3549, 3762, 3914
Mph1103I ATGCAT 2 cut(s) 1129, 1542
MroI TCCGGA 1 cut(s) 4135
MslI CAYNNNNRTG 2 cut(s) 2952, 4024
MspI CCGG 4 cut(s) 544, 1004, 1599, 4136
MspR9I CCNGG 7 cut(s) 717, 1004, 1005, 1193, 1599, 1600, 4184
MunI CAATTG 5 cut(s) 258, 636, 738, 3753, 4245
Mva1269I GAATGC 3 cut(s) 1127, 1680, 1747
MvaI CCWGG 3 cut(s) 717, 1193, 4184
MwoI GCNNNNNNNGC 5 cut(s) 1175, 1686, 1849, 3556, 4105
NciI CCSGG 4 cut(s) 1004, 1005, 1599, 1600
NdeI CATATG 1 cut(s) 707
NdeII GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
NlaIV GGNNCC 5 cut(s) 399, 714, 1698, 3324, 4322
NmuCI GTSAC 4 cut(s) 434, 1584, 2954, 3728
NsiI ATGCAT 2 cut(s) 1129, 1542
NspI RCATGY 4 cut(s) 1127, 1397, 1860, 1977
PaeI GCATGC 1 cut(s) 1127
PagI TCATGA 1 cut(s) 1054
PasI CCCWGGG 1 cut(s) 1192
PceI AGGCCT 1 cut(s) 1475
PciI ACATGT 1 cut(s) 1973
PciSI GCTCTTC 1 cut(s) 4245
PctI GAATGC 3 cut(s) 1127, 1680, 1747
PfoI TCCNGGA 1 cut(s) 4182
PkrI GCNGC 7 cut(s) 46, 49, 511, 1610, 3824, 4212, 4234
Ppu21I YACGTR 5 cut(s) 2333, 2747, 2816, 2954, 3023
PpuMI RGGWCCY 1 cut(s) 1696
PscI ACATGT 1 cut(s) 1973
PshAI GACNNNNGTC 1 cut(s) 951
PsiI TTATAA 2 cut(s) 902, 1503
Psp124BI GAGCTC 2 cut(s) 249, 1911
Psp1406I AACGTT 2 cut(s) 1039, 4152
Psp5II RGGWCCY 1 cut(s) 1696
Psp6I CCWGG 3 cut(s) 715, 1191, 4182
PspFI CCCAGC 1 cut(s) 4011
PspGI CCWGG 3 cut(s) 715, 1191, 4182
PspN4I GGNNCC 5 cut(s) 399, 714, 1698, 3324, 4322
PspPI GGNCC 6 cut(s) 541, 713, 1001, 1195, 1696, 3571
PspPPI RGGWCCY 1 cut(s) 1696
PsrI GAACNNNNNNTAC 2 cut(s) 1626, 1658
PstI CTGCAG 1 cut(s) 353
PsuI RGATCY 2 cut(s) 1288, 3784
RseI CAYNNNNRTG 2 cut(s) 2952, 4024
SacI GAGCTC 2 cut(s) 249, 1911
SapI GCTCTTC 1 cut(s) 4245
SatI GCNGC 7 cut(s) 45, 48, 510, 1609, 3823, 4211, 4233
Sau3AI GATC 7 cut(s) 88, 160, 454, 806, 1093, 1288, 3784
Sau96I GGNCC 6 cut(s) 541, 713, 1001, 1195, 1696, 3571
ScrFI CCNGG 7 cut(s) 717, 1004, 1005, 1193, 1599, 1600, 4184
SduI GDGCHC 3 cut(s) 249, 1911, 3954
SfcI CTRYAG 3 cut(s) 349, 3420, 3944
SinI GGWCC 2 cut(s) 1696, 3571
SmaI CCCGGG 2 cut(s) 1005, 1600
SmiMI CAYNNNNRTG 2 cut(s) 2952, 4024
SphI GCATGC 1 cut(s) 1127
SrfI GCCCGGGC 1 cut(s) 1005
SseBI AGGCCT 1 cut(s) 1475
SsiI CCGC 5 cut(s) 797, 1178, 4108, 4210, 4232
SspI AATATT 1 cut(s) 3613
SspMI CTAG 5 cut(s) 960, 1160, 1418, 2693, 3176
SstI GAGCTC 2 cut(s) 249, 1911
StuI AGGCCT 1 cut(s) 1475
StyD4I CCNGG 7 cut(s) 715, 1002, 1003, 1191, 1597, 1598, 4182
TaaI ACNGT 7 cut(s) 878, 1403, 1617, 2960, 3305, 3819, 3849
TaqI TCGA 6 cut(s) 130, 534, 1845, 3290, 3915, 4199
TauI GCSGC 2 cut(s) 4213, 4235
TscAI CASTG 4 cut(s) 883, 1449, 3733, 3772
TseFI GTSAC 4 cut(s) 434, 1584, 2954, 3728
TseI GCWGC 5 cut(s) 44, 47, 509, 1608, 3822
Tsp45I GTSAC 4 cut(s) 434, 1584, 2954, 3728
TspGWI ACGGA 5 cut(s) 1851, 3525, 3593, 4251, 4333
TspMI CCCGGG 2 cut(s) 1003, 1598
TspRI CASTG 4 cut(s) 883, 1449, 3733, 3772
VpaK11BI GGWCC 2 cut(s) 1696, 3571
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 4 cut(s) 1127, 1397, 1860, 1977
XmaI CCCGGG 2 cut(s) 1003, 1598
XmiI GTMKAC 4 cut(s) 170, 655, 1398, 1635
XspI CTAG 5 cut(s) 960, 1160, 1418, 2693, 3176
ZraI GACGTC 1 cut(s) 664
Zsp2I ATGCAT 2 cut(s) 1129, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.