Rh4BG096800

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
16530703 .. 16531368
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG096800.1

Sequence Viewer

Length: 564 bp
ATGGCAAAGAGTAGTTATGATGAGTACAGAGCAGTGCTGATATCCAAAGGTAGGGGAGCAAAAGAGAAACAAAAACGCTGGAAACCTCCTTCTCAAGGCTTTGTTAAGGTGAATACTGATGGTGCATTTGTACCCAATAACAGGGTGGGTGGTGCCGGGGTTGTTATTAGAAACAACAGAGGGGAAATCGCGGTGGCAAGAACCATTCCTCTCTTTGGTGTCACTACTCCTAGACATGCAGAGATTTTGGCAATCTCATGTGGGTTACAATTGGCGTTGGAGCAAGGGTATAGTGATTTGGAACTTGAATCGGATGCTCAGGCAATAATACAAGCAATTCAAACAGATGAGGAGAACCTTGCAATTGACGGGCACCTGGTGGAAGTGATCAAACTACTGATGCGGCGTTTTAGTACAATCTTTTGTGGCTATATCCCAAGGGAATGTAATAGAGTTGCCCATGAACTTGCAAGTTATGCTATTAGGCAGCGTAACACTTGTACTTGGTCTGATCAGTTGCCATTATGGCTGCTGGAATGTAACCAGGCTGATATAAGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

8.29

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 36 - 116 2.5e-06 RNase H
RVT_3 PF13456 38 - 160 3.7e-29 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 372
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 191, 403
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 4 cut(s) 26, 132, 415, 502
AfiI CCNNNNNNNGG 4 cut(s) 51, 95, 141, 215
AgsI TTSAA 2 cut(s) 308, 341
AjnI CCWGG 2 cut(s) 375, 543
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 487, 529
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 2 cut(s) 152, 372
BbvI GCAGC 2 cut(s) 499, 516
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 377, 545
BclI TGATCA 2 cut(s) 387, 511
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 2 cut(s) 231, 562
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 404, 488, 530
BlsI GCNGC 3 cut(s) 405, 489, 531
Bme1390I CCNGG 3 cut(s) 157, 377, 545
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 2 cut(s) 154, 374
BmrFI CCNGG 3 cut(s) 157, 377, 545
BmsI GCATC 2 cut(s) 304, 390
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 156, 437
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 95, 141, 215
BseBI CCWGG 2 cut(s) 377, 545
BseDI CCNNGG 2 cut(s) 156, 437
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 4 cut(s) 51, 95, 141, 215
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 2 cut(s) 499, 516
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 2 cut(s) 152, 372
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 4 cut(s) 51, 95, 141, 215
BsnI GGCC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 387, 511
BspACI CCGC 2 cut(s) 191, 403
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 154, 374
BspT107I GGYRCC 2 cut(s) 152, 372
BssECI CCNNGG 2 cut(s) 156, 437
BssMI GATC 2 cut(s) 387, 511
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 377, 545
BstAPI GCANNNNNTGC 1 cut(s) 476
BstDEI CTNAG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 2 cut(s) 390, 514
BstMBI GATC 2 cut(s) 387, 511
BstMWI GCNNNNNNNGC 2 cut(s) 476, 526
BstNI CCWGG 2 cut(s) 377, 545
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 155, 375, 543
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 499, 516
BsuRI GGCC 1 cut(s) 560
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 558
CsiI ACCWGGT 1 cut(s) 375
Csp6I GTAC 4 cut(s) 25, 131, 414, 501
CviAII CATG 3 cut(s) 236, 258, 461
CviJI RGCY 5 cut(s) 99, 429, 529, 548, 560
CviKI_1 RGCY 5 cut(s) 99, 429, 529, 548, 560
CviQI GTAC 4 cut(s) 25, 131, 414, 501
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 389, 513
DpnII GATC 2 cut(s) 387, 511
DraIII CACNNNGTG 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 437
Eco32I GATATC 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 375, 543
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 239, 261, 464
FaiI YATR 9 cut(s) 18, 237, 259, 291, 432, 462, 477, 526, 554
FatI CATG 3 cut(s) 235, 257, 460
FbaI TGATCA 2 cut(s) 387, 511
Fnu4HI GCNGC 3 cut(s) 404, 488, 530
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 404, 488, 530
FspBI CTAG 2 cut(s) 231, 562
GluI GCNGC 3 cut(s) 404, 488, 530
HaeIII GGCC 1 cut(s) 560
HapII CCGG 1 cut(s) 156
Hin1II CATG 3 cut(s) 239, 261, 464
HinfI GANTC 1 cut(s) 308
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 313, 511
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 4 cut(s) 125, 239, 362, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 526
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 3 cut(s) 239, 261, 464
Ksp22I TGATCA 2 cut(s) 387, 511
Kzo9I GATC 2 cut(s) 387, 511
LmnI GCTCC 2 cut(s) 56, 280
LpnPI CCDG 9 cut(s) 64, 127, 169, 305, 362, 389, 518, 530, 557
Lsp1109I GCAGC 2 cut(s) 499, 516
LweI GCATC 2 cut(s) 304, 390
MabI ACCWGGT 1 cut(s) 375
MaeI CTAG 2 cut(s) 231, 562
MaeIII GTNAC 4 cut(s) 220, 264, 491, 539
MalI GATC 2 cut(s) 389, 513
MboI GATC 2 cut(s) 387, 511
MfeI CAATTG 2 cut(s) 269, 363
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 269, 336, 363
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 4 cut(s) 96, 173, 219, 343
MseI TTAA 1 cut(s) 105
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 3 cut(s) 157, 377, 545
MunI CAATTG 2 cut(s) 269, 363
MvaI CCWGG 2 cut(s) 377, 545
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 476, 526
NciI CCSGG 1 cut(s) 157
NdeII GATC 2 cut(s) 387, 511
NlaIII CATG 3 cut(s) 239, 261, 464
NlaIV GGNNCC 2 cut(s) 154, 374
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 239
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 405, 489, 531
Psp6I CCWGG 2 cut(s) 375, 543
PspGI CCWGG 2 cut(s) 375, 543
PspN4I GGNNCC 2 cut(s) 154, 374
PspPI GGNCC 1 cut(s) 558
RsaI GTAC 4 cut(s) 26, 132, 415, 502
RsaNI GTAC 4 cut(s) 25, 131, 414, 501
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 404, 488, 530
Sau3AI GATC 2 cut(s) 387, 511
Sau96I GGNCC 1 cut(s) 558
ScrFI CCNGG 3 cut(s) 157, 377, 545
SduI GDGCHC 1 cut(s) 375
SetI ASST 5 cut(s) 52, 88, 111, 360, 378
SexAI ACCWGGT 1 cut(s) 375
SfaNI GCATC 2 cut(s) 304, 390
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 3 cut(s) 269, 336, 363
SsiI CCGC 2 cut(s) 191, 403
SspMI CTAG 2 cut(s) 231, 562
StyD4I CCNGG 3 cut(s) 155, 375, 543
StyI CCWWGG 1 cut(s) 437
TasI AATT 3 cut(s) 269, 336, 363
TatI WGTACW 3 cut(s) 24, 413, 500
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 487, 529
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 477
TspRI CASTG 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 93
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XspI CTAG 2 cut(s) 231, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.