Rorug05G0008100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000072
Physical Location & Seq
Forward (+)
476390 .. 478751
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0008100.1

Sequence Viewer

Length: 1479 bp
ATGTCGGTTTCAGGTGGCGCTAGTCCTTGTGGACCTCTCAACCCAAAAAAAACGTGGGTGGATACCTCGTTTCAAGAAGAAGACCTTTGCCTTTATTTCGGTAAGTTTCGGGTAAACATGGACAACTCTAAAGACACCAACTCTTCTTCTCCAGTTTCGTCTTCTGATGTCCCTCCAACCAAACCCCAACAACAATCAGAGGCTTGTTGTTATCCCAAACATGAAATCGGGTTCGAAAAGTCTAACTCTGTTCCAATTCCATTATATTCACAAGATATTTGGAGAGGTCAAAGTGACAACCCTGCGGGACAACTTTTGGGTTCAAACAACCTGAATGGGCAATTTTTGACAAGGAATGGGAACCCTAGACGAGATGCATATGCTGGTTTTCAATCTCATGAAGTGGCTGAGAAGAGTGGAATGTATTCAAATAATACTTGGTATCGAAGTTCAGGAATATTGAATGACATGGGGAACCAATCAAGCTTTGGCAATGACTCGATGCTGGGAAGTAGCTATGTAGCTCAAACGGCTATGACTCAATATGGCTCACAGTACTTGCTAGATAGCTTGTTGACTAAGGACCCCGTAGTTACAAATTTTATATTTGAAGGTGTTTTCGATTTCCTATTCGAGGTGATGAATGATTCAAATGGACATCATCTTTTTGGGAAGCTAGTTCAGTCATGCAGCGATAATCAGTTAGGCCTCATTGTAGCAAAGATAACTTTGAATGTCCAATTGCTTATCAACATATCAGTCGGCAGATATGGCTCAAAATCGGTTCAGAGGCTGATCAAGGTGCTTGAGAAATCACCCTTGATAGACATTGTGATAGCAGCCCTATCCAGTGGATTTGAAGAACTGATGACCAATCGCTCAGGATCCTTTGTTATATTGAAGTGCTTAAACCTCCTCGATACTGAGAAAAATCAGAAACTATATGAAGCTGCTCTAAATCTTTGCATCCCATTGGCTCAGAATGAAAAGGGATGTATATACTTGAATGAGTTCATCACCAACAGTAAAGCTCCATATAGAGAGACACTCATGGGTGAGATCTCAAGCAAATCAAAATTCCTTTCTCAGGATCCTTCAGGGAACTTTGTTGTTCAGCACATCCTCGGACTCCACAATCCCATTTACGGTGAGCGCATATGTTTGGAGCTGAGAGAACTTTACATACAGCTCTCGCAACAAAAAGGTGGCAGTCACGTTGTGGAGAAGTGCTTAAACTCATCCGGGATGGTTCATGTGGTAAGTGTTCTTCTAAAGTATGAAAAACTTTGGCAAGTTGCGAGGGATCAATATGGAAACTACGTGATCCAAACAGCATTGAAGAGCACAAAACGCGCGAATAGTCCCCTTCATCAAATGCTTATATCGAAGCTCGTACAGAATCGGAATGAACTTGTGATTGGATTTGGAAGGAAAGTGCTTGGTTTGATTGACAATGGGATCCCACTAGACCAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

492

Amino Acids

54.61

Weight (kDa)

6.76

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1353, 1355
AciI CCGC 1 cut(s) 305
AclWI GGATC 8 cut(s) 879, 892, 1085, 1098, 1311, 1318, 1453, 1466
AcsI RAATTY 2 cut(s) 598, 1076
AcuI CTGAAG 1 cut(s) 1080
AdeI CACNNNGTG 1 cut(s) 1219
AfaI GTAC 2 cut(s) 557, 1395
AfiI CCNNNNNNNGG 3 cut(s) 634, 1087, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 1401, 1433
Alw21I GWGCWC 1 cut(s) 1346
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 8 cut(s) 879, 892, 1085, 1098, 1311, 1318, 1453, 1466
AlwNI CAGNNNCTG 1 cut(s) 793
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 3 cut(s) 690, 839, 950
ApoI RAATTY 2 cut(s) 598, 1076
Asp700I GAANNNNTTC 2 cut(s) 424, 1010
AspLEI GCGC 3 cut(s) 20, 1155, 1355
AspS9I GGNCC 2 cut(s) 32, 583
AsuC2I CCSGG 1 cut(s) 1243
AsuHPI GGTGA 5 cut(s) 649, 807, 1009, 1067, 1160
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 2 cut(s) 32, 583
BamHI GGATCC 3 cut(s) 884, 1090, 1458
BarI GAAGNNNNNNTAC 2 cut(s) 1251, 1283
BbsI GAAGAC 2 cut(s) 87, 153
Bbv12I GWGCWC 1 cut(s) 1346
BbvI GCAGC 3 cut(s) 702, 851, 937
BccI CCATC 1 cut(s) 1240
BceAI ACGGC 1 cut(s) 546
BciVI GTATCC 1 cut(s) 55
BclI TGATCA 1 cut(s) 795
BcnI CCSGG 1 cut(s) 1243
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 5 cut(s) 21, 366, 563, 677, 1466
BfoI RGCGCY 1 cut(s) 21
BfuI GTATCC 1 cut(s) 55
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 3 cut(s) 691, 840, 951
BlsI GCNGC 3 cut(s) 692, 841, 952
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 1243
Bme18I GGWCC 2 cut(s) 32, 583
BmgT120I GGNCC 2 cut(s) 32, 583
BmiI GGNNCC 6 cut(s) 362, 476, 585, 886, 1092, 1460
BmrFI CCNGG 1 cut(s) 1243
BmsI GCATC 3 cut(s) 364, 492, 975
BpiI GAAGAC 2 cut(s) 87, 153
BplI GAGNNNNNCTC 2 cut(s) 1032, 1064
BpmI CTGGAG 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 880
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 827, 1048
BpuMI CCSGG 1 cut(s) 1243
BsaAI YACGTR 1 cut(s) 1321
BsaJI CCNNGG 1 cut(s) 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 1087, 1145
Bse1I ACTGG 2 cut(s) 152, 849
Bse3DI GCAATG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 1123
BseGI GGATG 5 cut(s) 966, 998, 1119, 1238, 1251
BseLI CCNNNNNNNGG 3 cut(s) 634, 1087, 1145
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 6 cut(s) 399, 894, 915, 992, 1100, 1160
BseNI ACTGG 2 cut(s) 152, 849
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 3 cut(s) 702, 851, 937
BseYI CCCAGC 1 cut(s) 505
Bsh1236I CGCG 2 cut(s) 1353, 1355
BshFI GGCC 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 1346
BsiSI CCGG 1 cut(s) 1242
BslFI GGGAC 3 cut(s) 155, 321, 1347
BslI CCNNNNNNNGG 3 cut(s) 634, 1087, 1145
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 3 cut(s) 155, 321, 1347
BsnI GGCC 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 1346
Bsp143I GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 6 cut(s) 400, 893, 916, 991, 1099, 1161
BspFNI CGCG 2 cut(s) 1353, 1355
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 6 cut(s) 362, 476, 585, 886, 1092, 1460
BspPI GGATC 8 cut(s) 879, 892, 1085, 1098, 1311, 1318, 1453, 1466
BspQI GCTCTTC 1 cut(s) 1334
BspT104I TTCGAA 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 2 cut(s) 152, 849
BssECI CCNNGG 1 cut(s) 1123
BssMI GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
Bst4CI ACNGT 3 cut(s) 555, 1025, 1148
Bst6I CTCTTC 3 cut(s) 148, 407, 1334
BstBAI YACGTR 1 cut(s) 1321
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1086, 1169
BstENI CCTNNNNNAGG 2 cut(s) 632, 1085
BstF5I GGATG 5 cut(s) 966, 998, 1119, 1238, 1251
BstFNI CGCG 2 cut(s) 1353, 1355
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 3 cut(s) 20, 1155, 1355
BstKTI GATC 7 cut(s) 798, 887, 1062, 1093, 1306, 1326, 1461
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
BstMWI GCNNNNNNNGC 3 cut(s) 530, 771, 1350
BstSCI CCNGG 1 cut(s) 1241
BstUI CGCG 2 cut(s) 1353, 1355
BstV1I GCAGC 3 cut(s) 702, 851, 937
BstV2I GAAGAC 2 cut(s) 87, 153
BstX2I RGATCY 4 cut(s) 884, 1059, 1090, 1458
BstYI RGATCY 4 cut(s) 884, 1059, 1090, 1458
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 708
BtsCI GGATG 5 cut(s) 966, 998, 1119, 1238, 1251
BtsIMutI CAGTG 1 cut(s) 856
CaiI CAGNNNCTG 1 cut(s) 793
CciI TCATGA 1 cut(s) 397
CfoI GCGC 3 cut(s) 20, 1155, 1355
Cfr13I GGNCC 2 cut(s) 32, 583
Csp6I GTAC 2 cut(s) 556, 1394
CviAII CATG 7 cut(s) 118, 221, 398, 469, 687, 1051, 1253
CviQI GTAC 2 cut(s) 556, 1394
DdeI CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1086, 1169
DpnI GATC 7 cut(s) 797, 886, 1061, 1092, 1305, 1325, 1460
DpnII GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
DraIII CACNNNGTG 1 cut(s) 1219
Eam1104I CTCTTC 3 cut(s) 148, 407, 1334
EarI CTCTTC 3 cut(s) 148, 407, 1334
Eco147I AGGCCT 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 32, 583
Eco57I CTGAAG 1 cut(s) 1080
EcoNI CCTNNNNNAGG 2 cut(s) 632, 1085
EcoO109I RGGNCCY 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 379
FaeI CATG 7 cut(s) 121, 224, 401, 472, 690, 1054, 1256
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 3 cut(s) 155, 321, 1347
FatI CATG 7 cut(s) 117, 220, 397, 468, 686, 1050, 1252
FauI CCCGC 1 cut(s) 298
FauNDI CATATG 2 cut(s) 379, 1157
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 691, 840, 951
FokI GGATG 5 cut(s) 953, 1005, 1106, 1225, 1258
Fsp4HI GCNGC 3 cut(s) 691, 840, 951
FspBI CTAG 5 cut(s) 21, 366, 563, 677, 1466
GlaI GCGC 3 cut(s) 19, 1154, 1354
GluI GCNGC 3 cut(s) 691, 840, 951
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 708
HapII CCGG 1 cut(s) 1242
HhaI GCGC 3 cut(s) 20, 1155, 1355
Hin1II CATG 7 cut(s) 121, 224, 401, 472, 690, 1054, 1256
Hin6I GCGC 3 cut(s) 18, 1153, 1353
HinP1I GCGC 3 cut(s) 18, 1153, 1353
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 5 cut(s) 497, 538, 647, 1128, 1399
HpaII CCGG 1 cut(s) 1242
HphI GGTGA 5 cut(s) 649, 807, 1009, 1067, 1160
Hpy166II GTNNAC 3 cut(s) 32, 115, 576
Hpy188I TCNGA 7 cut(s) 166, 199, 789, 936, 981, 1127, 1404
Hpy188III TCNNGA 5 cut(s) 74, 398, 453, 882, 1088
Hpy8I GTNNAC 3 cut(s) 32, 115, 576
HpyAV CCTTC 4 cut(s) 605, 1104, 1376, 1422
HpyCH4III ACNGT 3 cut(s) 555, 1025, 1148
HpyCH4IV ACGT 3 cut(s) 53, 1215, 1320
HpyCH4V TGCA 3 cut(s) 377, 690, 966
HpyF10VI GCNNNNNNNGC 3 cut(s) 530, 771, 1350
HpyF3I CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1086, 1169
HpySE526I ACGT 3 cut(s) 53, 1215, 1320
Hsp92II CATG 7 cut(s) 121, 224, 401, 472, 690, 1054, 1256
HspAI GCGC 3 cut(s) 18, 1153, 1353
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
LguI GCTCTTC 1 cut(s) 1334
LmnI GCTCC 2 cut(s) 1036, 1165
Lsp1109I GCAGC 3 cut(s) 702, 851, 937
LweI GCATC 3 cut(s) 364, 492, 975
MaeI CTAG 5 cut(s) 21, 366, 563, 677, 1466
MaeII ACGT 3 cut(s) 53, 1215, 1320
MaeIII GTNAC 3 cut(s) 293, 592, 1211
MalI GATC 7 cut(s) 797, 886, 1061, 1092, 1305, 1325, 1460
MboI GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
MboII GAAGA 9 cut(s) 89, 92, 135, 138, 153, 424, 872, 1259, 1351
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 4 cut(s) 884, 1059, 1090, 1458
MhlI GDGCHC 1 cut(s) 1346
MluCI AATT 5 cut(s) 255, 341, 598, 740, 1076
MlyI GAGTC 3 cut(s) 491, 532, 1122
MmeI TCCRAC 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 424, 1010
MseI TTAA 2 cut(s) 908, 1232
MspI CCGG 1 cut(s) 1242
MspR9I CCNGG 1 cut(s) 1243
MunI CAATTG 1 cut(s) 740
MvnI CGCG 2 cut(s) 1353, 1355
MwoI GCNNNNNNNGC 3 cut(s) 530, 771, 1350
NciI CCSGG 1 cut(s) 1243
NdeI CATATG 2 cut(s) 379, 1157
NdeII GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
NlaIII CATG 7 cut(s) 121, 224, 401, 472, 690, 1054, 1256
NlaIV GGNNCC 6 cut(s) 362, 476, 585, 886, 1092, 1460
NmuCI GTSAC 2 cut(s) 293, 1211
NsiI ATGCAT 1 cut(s) 379
NspV TTCGAA 1 cut(s) 234
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 1334
PdmI GAANNNNTTC 2 cut(s) 424, 1010
PfeI GAWTC 2 cut(s) 647, 1399
PfoI TCCNGGA 1 cut(s) 1241
PkrI GCNGC 3 cut(s) 692, 841, 952
PleI GAGTC 3 cut(s) 491, 532, 1122
PpsI GAGTC 3 cut(s) 491, 532, 1122
Ppu21I YACGTR 1 cut(s) 1321
PpuMI RGGWCCY 1 cut(s) 583
Psp5II RGGWCCY 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 505
PspN4I GGNNCC 6 cut(s) 362, 476, 585, 886, 1092, 1460
PspPI GGNCC 2 cut(s) 32, 583
PspPPI RGGWCCY 1 cut(s) 583
PsrI GAACNNNNNNTAC 2 cut(s) 1167, 1199
PstNI CAGNNNCTG 1 cut(s) 793
PsuI RGATCY 4 cut(s) 884, 1059, 1090, 1458
RsaI GTAC 2 cut(s) 557, 1395
RsaNI GTAC 2 cut(s) 556, 1394
SapI GCTCTTC 1 cut(s) 1334
SaqAI TTAA 2 cut(s) 908, 1232
SatI GCNGC 3 cut(s) 691, 840, 951
Sau3AI GATC 7 cut(s) 795, 884, 1059, 1090, 1303, 1323, 1458
Sau96I GGNCC 2 cut(s) 32, 583
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 3 cut(s) 491, 532, 1122
ScrFI CCNGG 1 cut(s) 1243
SduI GDGCHC 1 cut(s) 1346
SfaNI GCATC 3 cut(s) 364, 492, 975
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 2 cut(s) 32, 583
SmlI CTYRAG 2 cut(s) 806, 1063
SmoI CTYRAG 2 cut(s) 806, 1063
Sse9I AATT 5 cut(s) 255, 341, 598, 740, 1076
SseBI AGGCCT 1 cut(s) 708
SsiI CCGC 1 cut(s) 305
SspI AATATT 1 cut(s) 459
SspMI CTAG 5 cut(s) 21, 366, 563, 677, 1466
StuI AGGCCT 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 1241
TaaI ACNGT 3 cut(s) 555, 1025, 1148
TaiI ACGT 3 cut(s) 56, 1218, 1323
TaqI TCGA 7 cut(s) 234, 445, 500, 621, 633, 918, 1385
TasI AATT 5 cut(s) 255, 341, 598, 740, 1076
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 2 cut(s) 647, 1399
Tru1I TTAA 2 cut(s) 908, 1232
Tru9I TTAA 2 cut(s) 908, 1232
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 2 cut(s) 293, 1211
TseI GCWGC 3 cut(s) 690, 839, 950
Tsp45I GTSAC 2 cut(s) 293, 1211
TspRI CASTG 1 cut(s) 856
VpaK11BI GGWCC 2 cut(s) 32, 583
XagI CCTNNNNNAGG 2 cut(s) 632, 1085
XapI RAATTY 2 cut(s) 598, 1076
XcmI CCANNNNNNNNNTGG 2 cut(s) 51, 485
XmnI GAANNNNTTC 2 cut(s) 424, 1010
XspI CTAG 5 cut(s) 21, 366, 563, 677, 1466
ZrmI AGTACT 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.