Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 48 - 169 | 4.5e-20 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 116 |
| Acc36I | ACCTGC | 1 cut(s) | 116 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 170 |
| AclWI | GGATC | 1 cut(s) | 374 |
| AcsI | RAATTY | 2 cut(s) | 53, 503 |
| AdeI | CACNNNGTG | 1 cut(s) | 170 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 125, 170, 328 |
| AgsI | TTSAA | 8 cut(s) | 76, 200, 338, 395, 413, 433, 463, 542 |
| AluBI | AGCT | 6 cut(s) | 18, 35, 191, 227, 348, 500 |
| AluI | AGCT | 6 cut(s) | 18, 35, 191, 227, 348, 500 |
| AlwI | GGATC | 1 cut(s) | 374 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 356 |
| Ama87I | CYCGRG | 1 cut(s) | 468 |
| AoxI | GGCC | 1 cut(s) | 181 |
| ApeKI | GCWGC | 1 cut(s) | 402 |
| ApoI | RAATTY | 2 cut(s) | 53, 503 |
| AsuC2I | CCSGG | 2 cut(s) | 469, 470 |
| AsuHPI | GGTGA | 3 cut(s) | 224, 343, 583 |
| AvaI | CYCGRG | 1 cut(s) | 468 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| BbvI | GCAGC | 1 cut(s) | 389 |
| BccI | CCATC | 3 cut(s) | 143, 539, 581 |
| BcnI | CCSGG | 2 cut(s) | 469, 470 |
| BfmI | CTRYAG | 3 cut(s) | 123, 156, 439 |
| BfuAI | ACCTGC | 1 cut(s) | 116 |
| BisI | GCNGC | 1 cut(s) | 403 |
| BlsI | GCNGC | 1 cut(s) | 404 |
| Bme1390I | CCNGG | 2 cut(s) | 469, 470 |
| BmeT110I | CYCGRG | 1 cut(s) | 468 |
| BmrFI | CCNGG | 2 cut(s) | 469, 470 |
| BmrI | ACTGGG | 2 cut(s) | 299, 320 |
| BmuI | ACTGGG | 2 cut(s) | 299, 320 |
| BpuMI | CCSGG | 2 cut(s) | 469, 470 |
| BsaJI | CCNNGG | 4 cut(s) | 164, 184, 467, 468 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 125, 170, 328 |
| Bse1I | ACTGG | 3 cut(s) | 267, 294, 326 |
| Bse3DI | GCAATG | 1 cut(s) | 560 |
| BseDI | CCNNGG | 4 cut(s) | 164, 184, 467, 468 |
| BseGI | GGATG | 1 cut(s) | 592 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 125, 170, 328 |
| BseMI | GCAATG | 1 cut(s) | 560 |
| BseMII | CTCAG | 2 cut(s) | 305, 363 |
| BseNI | ACTGG | 3 cut(s) | 267, 294, 326 |
| BseXI | GCAGC | 1 cut(s) | 389 |
| BshFI | GGCC | 1 cut(s) | 183 |
| BsiHKCI | CYCGRG | 1 cut(s) | 468 |
| BsiSI | CCGG | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 125, 170, 328 |
| BsmI | GAATGC | 1 cut(s) | 479 |
| BsnI | GGCC | 1 cut(s) | 183 |
| BsoBI | CYCGRG | 1 cut(s) | 468 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp1407I | TGTACA | 1 cut(s) | 132 |
| Bsp143I | GATC | 2 cut(s) | 310, 379 |
| BspANI | GGCC | 1 cut(s) | 183 |
| BspCNI | CTCAG | 2 cut(s) | 306, 362 |
| BspMAI | CTGCAG | 1 cut(s) | 127 |
| BspMI | ACCTGC | 1 cut(s) | 116 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BspQI | GCTCTTC | 1 cut(s) | 2 |
| BsrDI | GCAATG | 1 cut(s) | 560 |
| BsrGI | TGTACA | 1 cut(s) | 132 |
| BsrI | ACTGG | 3 cut(s) | 267, 294, 326 |
| BssECI | CCNNGG | 4 cut(s) | 164, 184, 467, 468 |
| BssMI | GATC | 2 cut(s) | 310, 379 |
| BssT1I | CCWWGG | 1 cut(s) | 184 |
| Bst6I | CTCTTC | 2 cut(s) | 2, 172 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 452 |
| BstAUI | TGTACA | 1 cut(s) | 132 |
| BstDEI | CTNAG | 3 cut(s) | 314, 349, 406 |
| BstDSI | CCRYGG | 1 cut(s) | 164 |
| BstF5I | GGATG | 1 cut(s) | 592 |
| BstKTI | GATC | 2 cut(s) | 313, 382 |
| BstMBI | GATC | 2 cut(s) | 310, 379 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 452 |
| BstSCI | CCNGG | 2 cut(s) | 467, 468 |
| BstSFI | CTRYAG | 3 cut(s) | 123, 156, 439 |
| BstV1I | GCAGC | 1 cut(s) | 389 |
| BsuRI | GGCC | 1 cut(s) | 183 |
| BtgI | CCRYGG | 1 cut(s) | 164 |
| BtsCI | GGATG | 1 cut(s) | 592 |
| BtsIMutI | CAGTG | 2 cut(s) | 260, 333 |
| BveI | ACCTGC | 1 cut(s) | 116 |
| CaiI | CAGNNNCTG | 1 cut(s) | 356 |
| Cfr9I | CCCGGG | 1 cut(s) | 468 |
| CseI | GACGC | 1 cut(s) | 350 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CviAII | CATG | 1 cut(s) | 491 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 3 cut(s) | 314, 349, 406 |
| DpnI | GATC | 2 cut(s) | 312, 381 |
| DpnII | GATC | 2 cut(s) | 310, 379 |
| DraIII | CACNNNGTG | 1 cut(s) | 170 |
| Eam1104I | CTCTTC | 2 cut(s) | 2, 172 |
| EarI | CTCTTC | 2 cut(s) | 2, 172 |
| Eco130I | CCWWGG | 1 cut(s) | 184 |
| Eco147I | AGGCCT | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco88I | CYCGRG | 1 cut(s) | 468 |
| EcoT14I | CCWWGG | 1 cut(s) | 184 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| ErhI | CCWWGG | 1 cut(s) | 184 |
| FaeI | CATG | 1 cut(s) | 494 |
| FaiI | YATR | 8 cut(s) | 87, 158, 221, 298, 492, 516, 530, 563 |
| FatI | CATG | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 1 cut(s) | 403 |
| FokI | GGATG | 1 cut(s) | 599 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 1 cut(s) | 403 |
| GluI | GCNGC | 1 cut(s) | 403 |
| HaeIII | GGCC | 1 cut(s) | 183 |
| HapII | CCGG | 1 cut(s) | 469 |
| HgaI | GACGC | 1 cut(s) | 350 |
| Hin1II | CATG | 1 cut(s) | 494 |
| HinfI | GANTC | 2 cut(s) | 196, 581 |
| HpaII | CCGG | 1 cut(s) | 469 |
| HphI | GGTGA | 3 cut(s) | 224, 343, 583 |
| Hpy166II | GTNNAC | 2 cut(s) | 133, 215 |
| Hpy188I | TCNGA | 4 cut(s) | 315, 352, 379, 586 |
| Hpy8I | GTNNAC | 2 cut(s) | 133, 215 |
| HpyAV | CCTTC | 3 cut(s) | 82, 392, 469 |
| HpyCH4V | TGCA | 4 cut(s) | 85, 125, 446, 477 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 452 |
| HpyF3I | CTNAG | 3 cut(s) | 314, 349, 406 |
| Hsp92II | CATG | 1 cut(s) | 494 |
| Kzo9I | GATC | 2 cut(s) | 310, 379 |
| LguI | GCTCTTC | 1 cut(s) | 2 |
| LmnI | GCTCC | 2 cut(s) | 188, 224 |
| LpnPI | CCDG | 6 cut(s) | 111, 135, 248, 275, 339, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 389 |
| MaeIII | GTNAC | 2 cut(s) | 265, 593 |
| MalI | GATC | 2 cut(s) | 312, 381 |
| MboI | GATC | 2 cut(s) | 310, 379 |
| MboII | GAAGA | 6 cut(s) | 19, 186, 189, 407, 425, 554 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 4 cut(s) | 53, 503, 566, 607 |
| MnlI | CCTC | 6 cut(s) | 55, 126, 173, 332, 346, 385 |
| MseI | TTAA | 4 cut(s) | 57, 285, 606, 610 |
| MspI | CCGG | 1 cut(s) | 469 |
| MspR9I | CCNGG | 2 cut(s) | 469, 470 |
| Mva1269I | GAATGC | 1 cut(s) | 479 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 452 |
| NciI | CCSGG | 2 cut(s) | 469, 470 |
| NdeII | GATC | 2 cut(s) | 310, 379 |
| NlaIII | CATG | 1 cut(s) | 494 |
| PacI | TTAATTAA | 1 cut(s) | 610 |
| PaqCI | CACCTGC | 1 cut(s) | 116 |
| PceI | AGGCCT | 1 cut(s) | 183 |
| PciSI | GCTCTTC | 1 cut(s) | 2 |
| PctI | GAATGC | 1 cut(s) | 479 |
| PfeI | GAWTC | 2 cut(s) | 196, 581 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 170 |
| PkrI | GCNGC | 1 cut(s) | 404 |
| PstI | CTGCAG | 1 cut(s) | 127 |
| PstNI | CAGNNNCTG | 1 cut(s) | 356 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| SapI | GCTCTTC | 1 cut(s) | 2 |
| SaqAI | TTAA | 4 cut(s) | 57, 285, 606, 610 |
| SatI | GCNGC | 1 cut(s) | 403 |
| Sau3AI | GATC | 2 cut(s) | 310, 379 |
| SbfI | CCTGCAGG | 1 cut(s) | 127 |
| ScrFI | CCNGG | 2 cut(s) | 469, 470 |
| SdaI | CCTGCAGG | 1 cut(s) | 127 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfcI | CTRYAG | 3 cut(s) | 123, 156, 439 |
| SmaI | CCCGGG | 1 cut(s) | 470 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 127 |
| Sse9I | AATT | 4 cut(s) | 53, 503, 566, 607 |
| SseBI | AGGCCT | 1 cut(s) | 183 |
| SspI | AATATT | 1 cut(s) | 145 |
| StuI | AGGCCT | 1 cut(s) | 183 |
| StyD4I | CCNGG | 2 cut(s) | 467, 468 |
| StyI | CCWWGG | 1 cut(s) | 184 |
| TasI | AATT | 4 cut(s) | 53, 503, 566, 607 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TfiI | GAWTC | 2 cut(s) | 196, 581 |
| Tru1I | TTAA | 4 cut(s) | 57, 285, 606, 610 |
| Tru9I | TTAA | 4 cut(s) | 57, 285, 606, 610 |
| TscAI | CASTG | 2 cut(s) | 267, 333 |
| TseI | GCWGC | 1 cut(s) | 402 |
| TspDTI | ATGAA | 2 cut(s) | 496, 531 |
| TspGWI | ACGGA | 1 cut(s) | 181 |
| TspMI | CCCGGG | 1 cut(s) | 468 |
| TspRI | CASTG | 2 cut(s) | 267, 333 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 170 |
| XapI | RAATTY | 2 cut(s) | 53, 503 |
| XmaI | CCCGGG | 1 cut(s) | 468 |