Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 24 - 121 | 6.7e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 83, 341, 382 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AgsI | TTSAA | 2 cut(s) | 101, 194 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 1 cut(s) | 79 |
| AluI | AGCT | 1 cut(s) | 79 |
| AoxI | GGCC | 2 cut(s) | 103, 404 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 1 cut(s) | 405 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 248 |
| AsuNHI | GCTAGC | 1 cut(s) | 79 |
| BceAI | ACGGC | 1 cut(s) | 90 |
| BfaI | CTAG | 3 cut(s) | 80, 182, 324 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 412 |
| BisI | GCNGC | 1 cut(s) | 342 |
| BlsI | GCNGC | 1 cut(s) | 343 |
| BmgT120I | GGNCC | 1 cut(s) | 405 |
| BmtI | GCTAGC | 1 cut(s) | 83 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 81, 111 |
| Bse1I | ACTGG | 1 cut(s) | 156 |
| BseGI | GGATG | 1 cut(s) | 427 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 156 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BshFI | GGCC | 2 cut(s) | 105, 406 |
| BslFI | GGGAC | 1 cut(s) | 162 |
| BsmFI | GGGAC | 1 cut(s) | 162 |
| BsnI | GGCC | 2 cut(s) | 105, 406 |
| Bsp143I | GATC | 2 cut(s) | 55, 268 |
| BspACI | CCGC | 3 cut(s) | 83, 341, 382 |
| BspANI | GGCC | 2 cut(s) | 105, 406 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspOI | GCTAGC | 1 cut(s) | 83 |
| BsrI | ACTGG | 1 cut(s) | 156 |
| BssMI | GATC | 2 cut(s) | 55, 268 |
| Bst6I | CTCTTC | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 1 cut(s) | 81 |
| BstDEI | CTNAG | 3 cut(s) | 63, 126, 357 |
| BstF5I | GGATG | 1 cut(s) | 427 |
| BstKTI | GATC | 2 cut(s) | 58, 271 |
| BstMBI | GATC | 2 cut(s) | 55, 268 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 338, 412 |
| BsuRI | GGCC | 2 cut(s) | 105, 406 |
| BtsCI | GGATG | 1 cut(s) | 427 |
| Cac8I | GCNNGC | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 405 |
| CviAII | CATG | 4 cut(s) | 18, 317, 418, 506 |
| CviJI | RGCY | 8 cut(s) | 79, 105, 212, 344, 356, 368, 406, 415 |
| CviKI_1 | RGCY | 8 cut(s) | 79, 105, 212, 344, 356, 368, 406, 415 |
| DdeI | CTNAG | 3 cut(s) | 63, 126, 357 |
| DpnI | GATC | 2 cut(s) | 57, 270 |
| DpnII | GATC | 2 cut(s) | 55, 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 246 |
| EarI | CTCTTC | 1 cut(s) | 246 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| FaeI | CATG | 4 cut(s) | 21, 320, 421, 509 |
| FaiI | YATR | 8 cut(s) | 19, 72, 159, 171, 318, 363, 419, 507 |
| FaqI | GGGAC | 1 cut(s) | 162 |
| FatI | CATG | 4 cut(s) | 17, 316, 417, 505 |
| FauI | CCCGC | 1 cut(s) | 76 |
| Fnu4HI | GCNGC | 1 cut(s) | 342 |
| FokI | GGATG | 1 cut(s) | 434 |
| Fsp4HI | GCNGC | 1 cut(s) | 342 |
| FspBI | CTAG | 3 cut(s) | 80, 182, 324 |
| GluI | GCNGC | 1 cut(s) | 342 |
| HaeIII | GGCC | 2 cut(s) | 105, 406 |
| Hin1II | CATG | 4 cut(s) | 21, 320, 421, 509 |
| HinfI | GANTC | 2 cut(s) | 5, 40 |
| HphI | GGTGA | 2 cut(s) | 235, 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 23 |
| Hpy8I | GTNNAC | 1 cut(s) | 23 |
| HpyAV | CCTTC | 1 cut(s) | 181 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 338, 412 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 126, 357 |
| Hsp92II | CATG | 4 cut(s) | 21, 320, 421, 509 |
| Kzo9I | GATC | 2 cut(s) | 55, 268 |
| LpnPI | CCDG | 4 cut(s) | 19, 137, 441, 456 |
| MaeI | CTAG | 3 cut(s) | 80, 182, 324 |
| MaeIII | GTNAC | 1 cut(s) | 177 |
| MalI | GATC | 2 cut(s) | 57, 270 |
| MboI | GATC | 2 cut(s) | 55, 268 |
| MboII | GAAGA | 2 cut(s) | 263, 477 |
| MluCI | AATT | 4 cut(s) | 51, 172, 447, 499 |
| MnlI | CCTC | 4 cut(s) | 80, 202, 247, 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 96 |
| MseI | TTAA | 1 cut(s) | 374 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 338, 412 |
| NdeII | GATC | 2 cut(s) | 55, 268 |
| NheI | GCTAGC | 1 cut(s) | 79 |
| NlaIII | CATG | 4 cut(s) | 21, 320, 421, 509 |
| PdmI | GAANNNNTTC | 1 cut(s) | 96 |
| PfeI | GAWTC | 2 cut(s) | 5, 40 |
| PkrI | GCNGC | 1 cut(s) | 343 |
| PspPI | GGNCC | 1 cut(s) | 405 |
| SaqAI | TTAA | 1 cut(s) | 374 |
| SatI | GCNGC | 1 cut(s) | 342 |
| Sau3AI | GATC | 2 cut(s) | 55, 268 |
| Sau96I | GGNCC | 1 cut(s) | 405 |
| SetI | ASST | 3 cut(s) | 81, 192, 445 |
| Sse9I | AATT | 4 cut(s) | 51, 172, 447, 499 |
| SsiI | CCGC | 3 cut(s) | 83, 341, 382 |
| SspMI | CTAG | 3 cut(s) | 80, 182, 324 |
| TaqI | TCGA | 3 cut(s) | 8, 112, 271 |
| TasI | AATT | 4 cut(s) | 51, 172, 447, 499 |
| TauI | GCSGC | 1 cut(s) | 344 |
| TfiI | GAWTC | 2 cut(s) | 5, 40 |
| Tru1I | TTAA | 1 cut(s) | 374 |
| Tru9I | TTAA | 1 cut(s) | 374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 96 |
| XspI | CTAG | 3 cut(s) | 80, 182, 324 |