Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 9 - 80 | 8.7e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 386 |
| AccBSI | CCGCTC | 1 cut(s) | 10 |
| AciI | CCGC | 4 cut(s) | 10, 21, 174, 284 |
| AclWI | GGATC | 1 cut(s) | 107 |
| AcsI | RAATTY | 1 cut(s) | 236 |
| AcuI | CTGAAG | 1 cut(s) | 347 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AgsI | TTSAA | 4 cut(s) | 71, 146, 196, 275 |
| AluBI | AGCT | 2 cut(s) | 233, 349 |
| AluI | AGCT | 2 cut(s) | 233, 349 |
| AlwI | GGATC | 1 cut(s) | 107 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| AoxI | GGCC | 2 cut(s) | 281, 390 |
| ApoI | RAATTY | 1 cut(s) | 236 |
| AspS9I | GGNCC | 1 cut(s) | 281 |
| AsuHPI | GGTGA | 3 cut(s) | 76, 181, 316 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 302, 336 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 289 |
| BisI | GCNGC | 1 cut(s) | 284 |
| BlsI | GCNGC | 1 cut(s) | 285 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 1 cut(s) | 281 |
| BmsI | GCATC | 1 cut(s) | 310 |
| BpuEI | CTTGAG | 1 cut(s) | 67 |
| Bsa29I | ATCGAT | 1 cut(s) | 312 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| Bse3DI | GCAATG | 1 cut(s) | 293 |
| BseCI | ATCGAT | 1 cut(s) | 312 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMI | GCAATG | 1 cut(s) | 293 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BshFI | GGCC | 2 cut(s) | 283, 392 |
| BshVI | ATCGAT | 1 cut(s) | 312 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsmI | GAATGC | 1 cut(s) | 212 |
| BsnI | GGCC | 2 cut(s) | 283, 392 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp143I | GATC | 2 cut(s) | 112, 264 |
| BspACI | CCGC | 4 cut(s) | 10, 21, 174, 284 |
| BspANI | GGCC | 2 cut(s) | 283, 392 |
| BspDI | ATCGAT | 1 cut(s) | 312 |
| BspPI | GGATC | 1 cut(s) | 107 |
| BsrBI | CCGCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 1 cut(s) | 293 |
| BssMI | GATC | 2 cut(s) | 112, 264 |
| BstC8I | GCNNGC | 2 cut(s) | 19, 341 |
| BstKTI | GATC | 2 cut(s) | 115, 267 |
| BstMBI | GATC | 2 cut(s) | 112, 264 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 289 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 351 |
| Bsu15I | ATCGAT | 1 cut(s) | 312 |
| BsuRI | GGCC | 2 cut(s) | 283, 392 |
| BsuTUI | ATCGAT | 1 cut(s) | 312 |
| BtsI | GCAGTG | 1 cut(s) | 96 |
| BtsIMutI | CAGTG | 2 cut(s) | 96, 323 |
| Cac8I | GCNNGC | 2 cut(s) | 19, 341 |
| Cfr13I | GGNCC | 1 cut(s) | 281 |
| ClaI | ATCGAT | 1 cut(s) | 312 |
| CseI | GACGC | 1 cut(s) | 83 |
| CviAII | CATG | 1 cut(s) | 278 |
| CviJI | RGCY | 9 cut(s) | 17, 125, 233, 283, 292, 343, 349, 370, 392 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 125, 233, 283, 292, 343, 349, 370, 392 |
| DpnI | GATC | 2 cut(s) | 114, 266 |
| DpnII | GATC | 2 cut(s) | 112, 264 |
| Eco147I | AGGCCT | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 5 cut(s) | 225, 249, 263, 279, 296 |
| FatI | CATG | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 1 cut(s) | 284 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GluI | GCNGC | 1 cut(s) | 284 |
| HaeIII | GGCC | 2 cut(s) | 283, 392 |
| HgaI | GACGC | 1 cut(s) | 83 |
| Hin1II | CATG | 1 cut(s) | 281 |
| HindIII | AAGCTT | 1 cut(s) | 347 |
| HinfI | GANTC | 1 cut(s) | 314 |
| HphI | GGTGA | 3 cut(s) | 76, 181, 316 |
| Hpy188I | TCNGA | 1 cut(s) | 319 |
| HpyAV | CCTTC | 2 cut(s) | 125, 202 |
| HpyCH4V | TGCA | 4 cut(s) | 179, 210, 323, 339 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 289 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| Kzo9I | GATC | 2 cut(s) | 112, 264 |
| LmnI | GCTCC | 1 cut(s) | 7 |
| LpnPI | CCDG | 3 cut(s) | 31, 111, 349 |
| LweI | GCATC | 1 cut(s) | 310 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MalI | GATC | 2 cut(s) | 114, 266 |
| MbiI | CCGCTC | 1 cut(s) | 10 |
| MboI | GATC | 2 cut(s) | 112, 264 |
| MboII | GAAGA | 2 cut(s) | 140, 158 |
| MluCI | AATT | 2 cut(s) | 236, 299 |
| MnlI | CCTC | 4 cut(s) | 17, 65, 382, 395 |
| MseI | TTAA | 2 cut(s) | 164, 359 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| Mva1269I | GAATGC | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 289 |
| NdeII | GATC | 2 cut(s) | 112, 264 |
| NlaIII | CATG | 1 cut(s) | 281 |
| NmuCI | GTSAC | 1 cut(s) | 187 |
| PaeR7I | CTCGAG | 1 cut(s) | 386 |
| PceI | AGGCCT | 1 cut(s) | 392 |
| PctI | GAATGC | 1 cut(s) | 212 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 1 cut(s) | 285 |
| PspPI | GGNCC | 1 cut(s) | 281 |
| PspXI | VCTCGAGB | 1 cut(s) | 386 |
| SaqAI | TTAA | 2 cut(s) | 164, 359 |
| SatI | GCNGC | 1 cut(s) | 284 |
| Sau3AI | GATC | 2 cut(s) | 112, 264 |
| Sau96I | GGNCC | 1 cut(s) | 281 |
| SetI | ASST | 4 cut(s) | 136, 194, 235, 351 |
| SfaNI | GCATC | 1 cut(s) | 310 |
| Sfr274I | CTCGAG | 1 cut(s) | 386 |
| SlaI | CTCGAG | 1 cut(s) | 386 |
| SmlI | CTYRAG | 2 cut(s) | 46, 386 |
| SmoI | CTYRAG | 2 cut(s) | 46, 386 |
| Sse9I | AATT | 2 cut(s) | 236, 299 |
| SseBI | AGGCCT | 1 cut(s) | 392 |
| SsiI | CCGC | 4 cut(s) | 10, 21, 174, 284 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StuI | AGGCCT | 1 cut(s) | 392 |
| TaqI | TCGA | 2 cut(s) | 312, 387 |
| TasI | AATT | 2 cut(s) | 236, 299 |
| TauI | GCSGC | 1 cut(s) | 286 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 2 cut(s) | 164, 359 |
| Tru9I | TTAA | 2 cut(s) | 164, 359 |
| TscAI | CASTG | 2 cut(s) | 96, 330 |
| TseFI | GTSAC | 1 cut(s) | 187 |
| Tsp45I | GTSAC | 1 cut(s) | 187 |
| TspDTI | ATGAA | 2 cut(s) | 229, 264 |
| TspRI | CASTG | 2 cut(s) | 96, 330 |
| XapI | RAATTY | 1 cut(s) | 236 |
| XhoI | CTCGAG | 1 cut(s) | 386 |
| XspI | CTAG | 1 cut(s) | 59 |