ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 103 | 9.7e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 209 |
| AciI | CCGC | 1 cut(s) | 256 |
| AcsI | RAATTY | 3 cut(s) | 23, 111, 345 |
| AfaI | GTAC | 1 cut(s) | 278 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AgsI | TTSAA | 3 cut(s) | 140, 154, 163 |
| AluBI | AGCT | 3 cut(s) | 92, 98, 286 |
| AluI | AGCT | 3 cut(s) | 92, 98, 286 |
| ApoI | RAATTY | 3 cut(s) | 23, 111, 345 |
| AsuC2I | CCSGG | 1 cut(s) | 304 |
| AsuHPI | GGTGA | 1 cut(s) | 155 |
| BccI | CCATC | 3 cut(s) | 56, 226, 241 |
| BciVI | GTATCC | 1 cut(s) | 27 |
| BcnI | CCSGG | 1 cut(s) | 304 |
| BfaI | CTAG | 1 cut(s) | 354 |
| BfuI | GTATCC | 1 cut(s) | 27 |
| Bme1390I | CCNGG | 1 cut(s) | 304 |
| BmrFI | CCNGG | 1 cut(s) | 304 |
| BmsI | GCATC | 1 cut(s) | 136 |
| BpmI | CTGGAG | 1 cut(s) | 78 |
| BpuMI | CCSGG | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| BsiSI | CCGG | 1 cut(s) | 304 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BspACI | CCGC | 1 cut(s) | 256 |
| BstC8I | GCNNGC | 2 cut(s) | 288, 341 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 89 |
| BstNSI | RCATGY | 1 cut(s) | 230 |
| BstSCI | CCNGG | 1 cut(s) | 302 |
| BsuI | GTATCC | 1 cut(s) | 27 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 2 cut(s) | 288, 341 |
| Csp6I | GTAC | 1 cut(s) | 277 |
| CviAII | CATG | 3 cut(s) | 227, 293, 365 |
| CviJI | RGCY | 8 cut(s) | 50, 92, 98, 167, 183, 286, 302, 361 |
| CviKI_1 | RGCY | 8 cut(s) | 50, 92, 98, 167, 183, 286, 302, 361 |
| CviQI | GTAC | 1 cut(s) | 277 |
| EcoRI | GAATTC | 1 cut(s) | 111 |
| FaeI | CATG | 3 cut(s) | 230, 296, 368 |
| FaiI | YATR | 8 cut(s) | 108, 209, 228, 264, 294, 320, 332, 366 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 3 cut(s) | 226, 292, 364 |
| FokI | GGATG | 1 cut(s) | 230 |
| FspBI | CTAG | 1 cut(s) | 354 |
| GsuI | CTGGAG | 1 cut(s) | 78 |
| HapII | CCGG | 1 cut(s) | 304 |
| Hin1II | CATG | 3 cut(s) | 230, 296, 368 |
| HincII | GTYRAC | 1 cut(s) | 309 |
| HindII | GTYRAC | 1 cut(s) | 309 |
| HpaII | CCGG | 1 cut(s) | 304 |
| HphI | GGTGA | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 309 |
| Hpy8I | GTNNAC | 1 cut(s) | 309 |
| HpyAV | CCTTC | 3 cut(s) | 24, 134, 157 |
| HpyCH4V | TGCA | 2 cut(s) | 8, 339 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 89 |
| Hsp92II | CATG | 3 cut(s) | 230, 296, 368 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 3 cut(s) | 23, 108, 317 |
| LweI | GCATC | 1 cut(s) | 136 |
| MaeI | CTAG | 1 cut(s) | 354 |
| MluCI | AATT | 4 cut(s) | 23, 111, 210, 345 |
| MnlI | CCTC | 1 cut(s) | 208 |
| MseI | TTAA | 3 cut(s) | 72, 101, 252 |
| MspI | CCGG | 1 cut(s) | 304 |
| MspR9I | CCNGG | 1 cut(s) | 304 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 89 |
| NciI | CCSGG | 1 cut(s) | 304 |
| NlaIII | CATG | 3 cut(s) | 230, 296, 368 |
| NspI | RCATGY | 1 cut(s) | 230 |
| PciI | ACATGT | 1 cut(s) | 226 |
| PscI | ACATGT | 1 cut(s) | 226 |
| PsiI | TTATAA | 1 cut(s) | 209 |
| RsaI | GTAC | 1 cut(s) | 278 |
| RsaNI | GTAC | 1 cut(s) | 277 |
| SaqAI | TTAA | 3 cut(s) | 72, 101, 252 |
| ScrFI | CCNGG | 1 cut(s) | 304 |
| SetI | ASST | 6 cut(s) | 94, 100, 107, 145, 288, 372 |
| SfaNI | GCATC | 1 cut(s) | 136 |
| Sse9I | AATT | 4 cut(s) | 23, 111, 210, 345 |
| SsiI | CCGC | 1 cut(s) | 256 |
| SspMI | CTAG | 1 cut(s) | 354 |
| StyD4I | CCNGG | 1 cut(s) | 302 |
| TasI | AATT | 4 cut(s) | 23, 111, 210, 345 |
| TatI | WGTACW | 1 cut(s) | 276 |
| Tru1I | TTAA | 3 cut(s) | 72, 101, 252 |
| Tru9I | TTAA | 3 cut(s) | 72, 101, 252 |
| TspDTI | ATGAA | 1 cut(s) | 36 |
| XapI | RAATTY | 3 cut(s) | 23, 111, 345 |
| XceI | RCATGY | 1 cut(s) | 230 |
| XspI | CTAG | 1 cut(s) | 354 |