ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 107 | 7.1e-14 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 218 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AfaI | GTAC | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 63 |
| AflIII | ACRYGT | 1 cut(s) | 241 |
| AgsI | TTSAA | 1 cut(s) | 155 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 72 |
| AjnI | CCWGG | 1 cut(s) | 317 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 29, 61 |
| AluBI | AGCT | 3 cut(s) | 92, 98, 326 |
| AluI | AGCT | 3 cut(s) | 92, 98, 326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 92 |
| AoxI | GGCC | 1 cut(s) | 364 |
| ApeKI | GCWGC | 2 cut(s) | 92, 95 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| AspS9I | GGNCC | 2 cut(s) | 365, 382 |
| AvaII | GGWCC | 1 cut(s) | 382 |
| BbvI | GCAGC | 2 cut(s) | 79, 107 |
| BccI | CCATC | 3 cut(s) | 56, 250, 256 |
| BceAI | ACGGC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 1 cut(s) | 319 |
| BfaI | CTAG | 1 cut(s) | 141 |
| BfmI | CTRYAG | 2 cut(s) | 93, 377 |
| BisI | GCNGC | 3 cut(s) | 93, 96, 219 |
| BlsI | GCNGC | 3 cut(s) | 94, 97, 220 |
| Bme1390I | CCNGG | 1 cut(s) | 319 |
| Bme18I | GGWCC | 1 cut(s) | 382 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 2 cut(s) | 365, 382 |
| BmrFI | CCNGG | 1 cut(s) | 319 |
| BmrI | ACTGGG | 1 cut(s) | 348 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BmuI | ACTGGG | 1 cut(s) | 348 |
| BpuEI | CTTGAG | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 1 cut(s) | 77 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 63 |
| Bse1I | ACTGG | 1 cut(s) | 343 |
| BseBI | CCWGG | 1 cut(s) | 319 |
| BseDI | CCNNGG | 1 cut(s) | 77 |
| BseGI | GGATG | 2 cut(s) | 39, 238 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 63 |
| BseNI | ACTGG | 1 cut(s) | 343 |
| BseXI | GCAGC | 2 cut(s) | 79, 107 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| BshFI | GGCC | 1 cut(s) | 366 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 63 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BsnI | GGCC | 1 cut(s) | 366 |
| BspACI | CCGC | 1 cut(s) | 218 |
| BspANI | GGCC | 1 cut(s) | 366 |
| BspMAI | CTGCAG | 1 cut(s) | 97 |
| BsrI | ACTGG | 1 cut(s) | 343 |
| BssECI | CCNNGG | 1 cut(s) | 77 |
| Bst2UI | CCWGG | 1 cut(s) | 319 |
| Bst4CI | ACNGT | 1 cut(s) | 191 |
| BstDEI | CTNAG | 1 cut(s) | 71 |
| BstDSI | CCRYGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 2 cut(s) | 39, 238 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| BstNI | CCWGG | 1 cut(s) | 319 |
| BstNSI | RCATGY | 2 cut(s) | 245, 281 |
| BstSCI | CCNGG | 1 cut(s) | 317 |
| BstSFI | CTRYAG | 2 cut(s) | 93, 377 |
| BstV1I | GCAGC | 2 cut(s) | 79, 107 |
| BsuRI | GGCC | 1 cut(s) | 366 |
| BtgI | CCRYGG | 1 cut(s) | 77 |
| BtsCI | GGATG | 2 cut(s) | 39, 238 |
| CaiI | CAGNNNCTG | 1 cut(s) | 92 |
| Cfr13I | GGNCC | 2 cut(s) | 365, 382 |
| Csp6I | GTAC | 1 cut(s) | 292 |
| CviAII | CATG | 3 cut(s) | 242, 278, 308 |
| CviQI | GTAC | 1 cut(s) | 292 |
| DdeI | CTNAG | 1 cut(s) | 71 |
| DriI | GACNNNNNGTC | 1 cut(s) | 72 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 382 |
| EcoO109I | RGGNCCY | 2 cut(s) | 365, 382 |
| EcoRII | CCWGG | 1 cut(s) | 317 |
| FaeI | CATG | 3 cut(s) | 245, 281, 311 |
| FaiI | YATR | 8 cut(s) | 108, 243, 279, 309, 335, 347, 399, 406 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 3 cut(s) | 241, 277, 307 |
| Fnu4HI | GCNGC | 3 cut(s) | 93, 96, 219 |
| FokI | GGATG | 2 cut(s) | 46, 245 |
| Fsp4HI | GCNGC | 3 cut(s) | 93, 96, 219 |
| FspBI | CTAG | 1 cut(s) | 141 |
| GluI | GCNGC | 3 cut(s) | 93, 96, 219 |
| HaeIII | GGCC | 1 cut(s) | 366 |
| Hin1II | CATG | 3 cut(s) | 245, 281, 311 |
| HinfI | GANTC | 1 cut(s) | 111 |
| Hpy188I | TCNGA | 1 cut(s) | 300 |
| Hpy188III | TCNNGA | 2 cut(s) | 17, 125 |
| HpyAV | CCTTC | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 1 cut(s) | 191 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 44, 95, 354 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| HpyF3I | CTNAG | 1 cut(s) | 71 |
| Hsp92II | CATG | 3 cut(s) | 245, 281, 311 |
| LpnPI | CCDG | 4 cut(s) | 304, 324, 331, 365 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 107 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MboII | GAAGA | 2 cut(s) | 167, 298 |
| MluCI | AATT | 1 cut(s) | 23 |
| MlyI | GAGTC | 1 cut(s) | 120 |
| MnlI | CCTC | 2 cut(s) | 171, 223 |
| MseI | TTAA | 4 cut(s) | 101, 167, 237, 267 |
| MspR9I | CCNGG | 1 cut(s) | 319 |
| MvaI | CCWGG | 1 cut(s) | 319 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 323 |
| NlaIII | CATG | 3 cut(s) | 245, 281, 311 |
| NspI | RCATGY | 2 cut(s) | 245, 281 |
| PciI | ACATGT | 1 cut(s) | 241 |
| PkrI | GCNGC | 3 cut(s) | 94, 97, 220 |
| PleI | GAGTC | 1 cut(s) | 119 |
| PpsI | GAGTC | 1 cut(s) | 119 |
| PpuMI | RGGWCCY | 1 cut(s) | 382 |
| PscI | ACATGT | 1 cut(s) | 241 |
| Psp5II | RGGWCCY | 1 cut(s) | 382 |
| Psp6I | CCWGG | 1 cut(s) | 317 |
| PspGI | CCWGG | 1 cut(s) | 317 |
| PspPI | GGNCC | 2 cut(s) | 365, 382 |
| PspPPI | RGGWCCY | 1 cut(s) | 382 |
| PstI | CTGCAG | 1 cut(s) | 97 |
| PstNI | CAGNNNCTG | 1 cut(s) | 92 |
| RsaI | GTAC | 1 cut(s) | 293 |
| RsaNI | GTAC | 1 cut(s) | 292 |
| SaqAI | TTAA | 4 cut(s) | 101, 167, 237, 267 |
| SatI | GCNGC | 3 cut(s) | 93, 96, 219 |
| Sau96I | GGNCC | 2 cut(s) | 365, 382 |
| SchI | GAGTC | 1 cut(s) | 120 |
| ScrFI | CCNGG | 1 cut(s) | 319 |
| SetI | ASST | 5 cut(s) | 94, 100, 107, 328, 387 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SfcI | CTRYAG | 2 cut(s) | 93, 377 |
| SinI | GGWCC | 1 cut(s) | 382 |
| SmlI | CTYRAG | 1 cut(s) | 205 |
| SmoI | CTYRAG | 1 cut(s) | 205 |
| Sse9I | AATT | 1 cut(s) | 23 |
| SsiI | CCGC | 1 cut(s) | 218 |
| SspMI | CTAG | 1 cut(s) | 141 |
| StyD4I | CCNGG | 1 cut(s) | 317 |
| TaaI | ACNGT | 1 cut(s) | 191 |
| TasI | AATT | 1 cut(s) | 23 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TauI | GCSGC | 1 cut(s) | 221 |
| Tru1I | TTAA | 4 cut(s) | 101, 167, 237, 267 |
| Tru9I | TTAA | 4 cut(s) | 101, 167, 237, 267 |
| TseI | GCWGC | 2 cut(s) | 92, 95 |
| TspDTI | ATGAA | 2 cut(s) | 36, 50 |
| TspGWI | ACGGA | 1 cut(s) | 66 |
| VpaK11BI | GGWCC | 1 cut(s) | 382 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XceI | RCATGY | 2 cut(s) | 245, 281 |
| XspI | CTAG | 1 cut(s) | 141 |