Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000072

Physical Location & Seq

Genomic Coordinates Forward (+)

6773966 .. 6775041

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATACGACGAACTTGTGAAGTTATTGCTTTGTATGATGGTCTCTATTTTTGTGCACAAGCAGGTTTCTCACATATTTTGGTGGAGGGTGATGCTAAAAATGTTTTTGCAGCCTTGAATGCGATAGAGGAGGATTTCAGTATTGATGGAGGCCTGGTTGACGAAGCGAAGGGACCAAGACTCACAGCGTATGAGTTGGTGCATGACAACATACCCACCACTCTTATAGCAGATTTCAACTCAGAAGGTGACACCGGTAACAAGATAGGTACCTACACTCTTGTGGTCAGTGCAAAGTATCATAACATACCATTCTTTGTGGCTGCATCACTTAATTCCGTTGATTTTGTTAAACAGCGGATCAATATTGCATTGATATTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

129

Amino Acids

13.96

Weight (kDa)

4.71

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	81 - 114	1.6e-07	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38920
fragaria_vesca	FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica	MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica	Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis	pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis	RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata	RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora	Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii	Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa	Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha	Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana	Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	53
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	118, 238
AjnI	CCWGG	1 cut(s)	153
AleI	CACNNNNGTG	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	47
Alw44I	GTGCAC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	151
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	2 cut(s)	110, 323
AsiGI	ACCGGT	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	101, 260
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	122, 310
BccI	CCATC	2 cut(s)	32, 140
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	111, 324
BlsI	GCNGC	2 cut(s)	112, 325
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	174, 271
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	82, 335
BsaI	GGTCTC	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse118I	RCCGGY	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	122, 310
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	2 cut(s)	174, 271
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	122, 310
BsuRI	GGCC	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	3 cut(s)	113, 153, 323
CviKI_1	RGCY	3 cut(s)	113, 153, 323
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	36, 75, 192, 204, 212, 227, 303, 308
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	111, 324
Fsp4HI	GCNGC	2 cut(s)	111, 324
GluI	GCNGC	2 cut(s)	111, 324
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	2 cut(s)	101, 260
Hpy166II	GTNNAC	2 cut(s)	56, 160
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	56, 160
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	163, 239
HpyCH4V	TGCA	6 cut(s)	56, 110, 202, 293, 326, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	206
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	360
LpnPI	CCDG	4 cut(s)	48, 140, 167, 268
Lsp1109I	GCAGC	2 cut(s)	122, 310
LweI	GCATC	2 cut(s)	82, 335
MaeIII	GTNAC	2 cut(s)	248, 257
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	4 cut(s)	79, 121, 124, 143
MseI	TTAA	2 cut(s)	333, 351
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	174, 271
NmuCI	GTSAC	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	153
PctI	GAATGC	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	112, 325
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	174, 271
PspPI	GGNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	333, 351
SatI	GCNGC	2 cut(s)	111, 324
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	4 cut(s)	67, 250, 271, 275
SfaNI	GCATC	2 cut(s)	82, 335
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	367
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	153
TasI	AATT	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	333, 351
Tru9I	TTAA	2 cut(s)	333, 351
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	2 cut(s)	110, 323
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.