Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 397 |
| AciI | CCGC | 1 cut(s) | 156 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcyI | GRCGYC | 2 cut(s) | 340, 524 |
| AfaI | GTAC | 1 cut(s) | 536 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 368, 397, 488 |
| AflIII | ACRYGT | 1 cut(s) | 509 |
| AgsI | TTSAA | 1 cut(s) | 504 |
| AhlI | ACTAGT | 1 cut(s) | 229 |
| AjnI | CCWGG | 1 cut(s) | 335 |
| AluBI | AGCT | 5 cut(s) | 85, 98, 136, 153, 346 |
| AluI | AGCT | 5 cut(s) | 85, 98, 136, 153, 346 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApeKI | GCWGC | 2 cut(s) | 153, 346 |
| AsuC2I | CCSGG | 2 cut(s) | 369, 483 |
| BbvI | GCAGC | 2 cut(s) | 140, 333 |
| BccI | CCATC | 2 cut(s) | 22, 285 |
| BciT130I | CCWGG | 1 cut(s) | 337 |
| BciVI | GTATCC | 1 cut(s) | 369 |
| BcnI | CCSGG | 2 cut(s) | 369, 483 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BcuI | ACTAGT | 1 cut(s) | 229 |
| BfaI | CTAG | 2 cut(s) | 230, 498 |
| BfmI | CTRYAG | 1 cut(s) | 205 |
| BfuI | GTATCC | 1 cut(s) | 369 |
| BisI | GCNGC | 2 cut(s) | 154, 347 |
| BlsI | GCNGC | 2 cut(s) | 155, 348 |
| Bme1390I | CCNGG | 3 cut(s) | 337, 369, 483 |
| BmiI | GGNNCC | 1 cut(s) | 202 |
| BmrFI | CCNGG | 3 cut(s) | 337, 369, 483 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| BpuMI | CCSGG | 2 cut(s) | 369, 483 |
| BsaAI | YACGTR | 1 cut(s) | 269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 105 |
| BsaHI | GRCGYC | 2 cut(s) | 340, 524 |
| BsaJI | CCNNGG | 4 cut(s) | 367, 391, 482, 519 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 171, 201 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 368, 397, 488 |
| Bse118I | RCCGGY | 1 cut(s) | 417 |
| Bse1I | ACTGG | 1 cut(s) | 493 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| Bse8I | GATNNNNATC | 1 cut(s) | 105 |
| BseBI | CCWGG | 1 cut(s) | 337 |
| BseDI | CCNNGG | 4 cut(s) | 367, 391, 482, 519 |
| BseGI | GGATG | 2 cut(s) | 43, 216 |
| BseJI | GATNNNNATC | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 368, 397, 488 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseNI | ACTGG | 1 cut(s) | 493 |
| BseXI | GCAGC | 2 cut(s) | 140, 333 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BsiSI | CCGG | 3 cut(s) | 369, 418, 482 |
| BslFI | GGGAC | 1 cut(s) | 499 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 368, 397, 488 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 1 cut(s) | 499 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bsp143I | GATC | 1 cut(s) | 445 |
| Bsp19I | CCATGG | 2 cut(s) | 391, 519 |
| BspACI | CCGC | 1 cut(s) | 156 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspLI | GGNNCC | 1 cut(s) | 202 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BsrFI | RCCGGY | 1 cut(s) | 417 |
| BsrI | ACTGG | 1 cut(s) | 493 |
| BssAI | RCCGGY | 1 cut(s) | 417 |
| BssECI | CCNNGG | 4 cut(s) | 367, 391, 482, 519 |
| BssMI | GATC | 1 cut(s) | 445 |
| BssNI | GRCGYC | 2 cut(s) | 340, 524 |
| BssT1I | CCWWGG | 2 cut(s) | 391, 519 |
| Bst2UI | CCWGG | 1 cut(s) | 337 |
| Bst6I | CTCTTC | 1 cut(s) | 300 |
| BstACI | GRCGYC | 2 cut(s) | 340, 524 |
| BstBAI | YACGTR | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 3 cut(s) | 278, 474, 553 |
| BstDEI | CTNAG | 1 cut(s) | 94 |
| BstDSI | CCRYGG | 2 cut(s) | 391, 519 |
| BstF5I | GGATG | 2 cut(s) | 43, 216 |
| BstKTI | GATC | 1 cut(s) | 448 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 445 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 159, 346, 478 |
| BstNI | CCWGG | 1 cut(s) | 337 |
| BstNSI | RCATGY | 1 cut(s) | 513 |
| BstSCI | CCNGG | 3 cut(s) | 335, 367, 481 |
| BstSFI | CTRYAG | 1 cut(s) | 205 |
| BstV1I | GCAGC | 2 cut(s) | 140, 333 |
| BsuI | GTATCC | 1 cut(s) | 369 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BtgI | CCRYGG | 2 cut(s) | 391, 519 |
| BtsCI | GGATG | 2 cut(s) | 43, 216 |
| Cac8I | GCNNGC | 3 cut(s) | 278, 474, 553 |
| Cfr10I | RCCGGY | 1 cut(s) | 417 |
| CseI | GACGC | 2 cut(s) | 329, 513 |
| Csp6I | GTAC | 1 cut(s) | 535 |
| CviAII | CATG | 6 cut(s) | 222, 253, 392, 452, 510, 520 |
| CviQI | GTAC | 1 cut(s) | 535 |
| DdeI | CTNAG | 1 cut(s) | 94 |
| DpnI | GATC | 1 cut(s) | 447 |
| DpnII | GATC | 1 cut(s) | 445 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 300 |
| EarI | CTCTTC | 1 cut(s) | 300 |
| Eco130I | CCWWGG | 2 cut(s) | 391, 519 |
| EcoRII | CCWGG | 1 cut(s) | 335 |
| EcoT14I | CCWWGG | 2 cut(s) | 391, 519 |
| ErhI | CCWWGG | 2 cut(s) | 391, 519 |
| FaeI | CATG | 6 cut(s) | 225, 256, 395, 455, 513, 523 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 61, 93 |
| FaqI | GGGAC | 1 cut(s) | 499 |
| FatI | CATG | 6 cut(s) | 221, 252, 391, 451, 509, 519 |
| Fnu4HI | GCNGC | 2 cut(s) | 154, 347 |
| FokI | GGATG | 2 cut(s) | 30, 223 |
| Fsp4HI | GCNGC | 2 cut(s) | 154, 347 |
| FspBI | CTAG | 2 cut(s) | 230, 498 |
| GluI | GCNGC | 2 cut(s) | 154, 347 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| HapII | CCGG | 3 cut(s) | 369, 418, 482 |
| HgaI | GACGC | 2 cut(s) | 329, 513 |
| Hin1I | GRCGYC | 2 cut(s) | 340, 524 |
| Hin1II | CATG | 6 cut(s) | 225, 256, 395, 455, 513, 523 |
| HindIII | AAGCTT | 1 cut(s) | 83 |
| HinfI | GANTC | 1 cut(s) | 218 |
| HpaII | CCGG | 3 cut(s) | 369, 418, 482 |
| Hpy188I | TCNGA | 2 cut(s) | 243, 409 |
| HpyAV | CCTTC | 2 cut(s) | 208, 266 |
| HpyCH4IV | ACGT | 1 cut(s) | 268 |
| HpyCH4V | TGCA | 7 cut(s) | 43, 252, 264, 313, 349, 441, 555 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 159, 346, 478 |
| HpyF3I | CTNAG | 1 cut(s) | 94 |
| HpySE526I | ACGT | 1 cut(s) | 268 |
| Hsp92I | GRCGYC | 2 cut(s) | 340, 524 |
| Hsp92II | CATG | 6 cut(s) | 225, 256, 395, 455, 513, 523 |
| Kzo9I | GATC | 1 cut(s) | 445 |
| LmnI | GCTCC | 2 cut(s) | 243, 431 |
| Lsp1109I | GCAGC | 2 cut(s) | 140, 333 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 2 cut(s) | 230, 498 |
| MaeII | ACGT | 1 cut(s) | 268 |
| MaeIII | GTNAC | 1 cut(s) | 331 |
| MalI | GATC | 1 cut(s) | 447 |
| MboI | GATC | 1 cut(s) | 445 |
| MboII | GAAGA | 3 cut(s) | 131, 300, 317 |
| MluCI | AATT | 1 cut(s) | 435 |
| MnlI | CCTC | 5 cut(s) | 57, 117, 291, 315, 348 |
| MseI | TTAA | 1 cut(s) | 105 |
| MspA1I | CMGCKG | 1 cut(s) | 346 |
| MspI | CCGG | 3 cut(s) | 369, 418, 482 |
| MspR9I | CCNGG | 3 cut(s) | 337, 369, 483 |
| MvaI | CCWGG | 1 cut(s) | 337 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 159, 346, 478 |
| NciI | CCSGG | 2 cut(s) | 369, 483 |
| NcoI | CCATGG | 2 cut(s) | 391, 519 |
| NdeII | GATC | 1 cut(s) | 445 |
| NlaIII | CATG | 6 cut(s) | 225, 256, 395, 455, 513, 523 |
| NlaIV | GGNNCC | 1 cut(s) | 202 |
| NspI | RCATGY | 1 cut(s) | 513 |
| PciI | ACATGT | 1 cut(s) | 509 |
| PfeI | GAWTC | 1 cut(s) | 218 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 397 |
| PkrI | GCNGC | 2 cut(s) | 155, 348 |
| Ppu21I | YACGTR | 1 cut(s) | 269 |
| PscI | ACATGT | 1 cut(s) | 509 |
| Psp6I | CCWGG | 1 cut(s) | 335 |
| PspGI | CCWGG | 1 cut(s) | 335 |
| PspN4I | GGNNCC | 1 cut(s) | 202 |
| PvuII | CAGCTG | 1 cut(s) | 346 |
| RsaI | GTAC | 1 cut(s) | 536 |
| RsaNI | GTAC | 1 cut(s) | 535 |
| SaqAI | TTAA | 1 cut(s) | 105 |
| SatI | GCNGC | 2 cut(s) | 154, 347 |
| Sau3AI | GATC | 1 cut(s) | 445 |
| ScrFI | CCNGG | 3 cut(s) | 337, 369, 483 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 1 cut(s) | 205 |
| SpeI | ACTAGT | 1 cut(s) | 229 |
| Sse9I | AATT | 1 cut(s) | 435 |
| SsiI | CCGC | 1 cut(s) | 156 |
| SspMI | CTAG | 2 cut(s) | 230, 498 |
| StyD4I | CCNGG | 3 cut(s) | 335, 367, 481 |
| StyI | CCWWGG | 2 cut(s) | 391, 519 |
| TaiI | ACGT | 1 cut(s) | 271 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TasI | AATT | 1 cut(s) | 435 |
| TatI | WGTACW | 1 cut(s) | 534 |
| TfiI | GAWTC | 1 cut(s) | 218 |
| Tru1I | TTAA | 1 cut(s) | 105 |
| Tru9I | TTAA | 1 cut(s) | 105 |
| TseI | GCWGC | 2 cut(s) | 153, 346 |
| TspDTI | ATGAA | 3 cut(s) | 210, 227, 555 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 397 |
| XceI | RCATGY | 1 cut(s) | 513 |
| XspI | CTAG | 2 cut(s) | 230, 498 |