Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 31 - 100 | 7.6e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AccII | CGCG | 1 cut(s) | 134 |
| AciI | CCGC | 3 cut(s) | 35, 128, 134 |
| AclWI | GGATC | 1 cut(s) | 109 |
| AfaI | GTAC | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AflIII | ACRYGT | 1 cut(s) | 23 |
| AgsI | TTSAA | 1 cut(s) | 41 |
| AjnI | CCWGG | 2 cut(s) | 73, 112 |
| AluBI | AGCT | 1 cut(s) | 122 |
| AluI | AGCT | 1 cut(s) | 122 |
| AlwI | GGATC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 1 cut(s) | 184 |
| AspLEI | GCGC | 1 cut(s) | 134 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 1 cut(s) | 29 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| BbvI | GCAGC | 1 cut(s) | 196 |
| BccI | CCATC | 3 cut(s) | 23, 51, 92 |
| BciT130I | CCWGG | 2 cut(s) | 75, 114 |
| BisI | GCNGC | 1 cut(s) | 185 |
| BlsI | GCNGC | 1 cut(s) | 186 |
| Bme1390I | CCNGG | 2 cut(s) | 75, 114 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 2 cut(s) | 75, 114 |
| BpmI | CTGGAG | 1 cut(s) | 135 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 2 cut(s) | 73, 255 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseBI | CCWGG | 2 cut(s) | 75, 114 |
| BseDI | CCNNGG | 2 cut(s) | 73, 255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseXI | GCAGC | 1 cut(s) | 196 |
| Bsh1236I | CGCG | 1 cut(s) | 134 |
| BslFI | GGGAC | 1 cut(s) | 46 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmFI | GGGAC | 1 cut(s) | 46 |
| Bsp143I | GATC | 1 cut(s) | 101 |
| BspACI | CCGC | 3 cut(s) | 35, 128, 134 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspFNI | CGCG | 1 cut(s) | 134 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| BspPI | GGATC | 1 cut(s) | 109 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BssECI | CCNNGG | 2 cut(s) | 73, 255 |
| BssMI | GATC | 1 cut(s) | 101 |
| BssT1I | CCWWGG | 1 cut(s) | 255 |
| Bst2UI | CCWGG | 2 cut(s) | 75, 114 |
| BstC8I | GCNNGC | 3 cut(s) | 130, 269, 273 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstFNI | CGCG | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 134 |
| BstKTI | GATC | 1 cut(s) | 104 |
| BstMBI | GATC | 1 cut(s) | 101 |
| BstNI | CCWGG | 2 cut(s) | 75, 114 |
| BstNSI | RCATGY | 1 cut(s) | 27 |
| BstSCI | CCNGG | 2 cut(s) | 73, 112 |
| BstUI | CGCG | 1 cut(s) | 134 |
| BstV1I | GCAGC | 1 cut(s) | 196 |
| Cac8I | GCNNGC | 3 cut(s) | 130, 269, 273 |
| CfoI | GCGC | 1 cut(s) | 134 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| Csp6I | GTAC | 1 cut(s) | 213 |
| CviAII | CATG | 1 cut(s) | 24 |
| CviJI | RGCY | 7 cut(s) | 51, 122, 140, 243, 267, 271, 275 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 122, 140, 243, 267, 271, 275 |
| CviQI | GTAC | 1 cut(s) | 213 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 1 cut(s) | 103 |
| DpnII | GATC | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 255 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| EcoRII | CCWGG | 2 cut(s) | 73, 112 |
| EcoT14I | CCWWGG | 1 cut(s) | 255 |
| ErhI | CCWWGG | 1 cut(s) | 255 |
| FaeI | CATG | 1 cut(s) | 27 |
| FaiI | YATR | 2 cut(s) | 25, 80 |
| FaqI | GGGAC | 1 cut(s) | 46 |
| FatI | CATG | 1 cut(s) | 23 |
| FauI | CCCGC | 2 cut(s) | 121, 127 |
| Fnu4HI | GCNGC | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 1 cut(s) | 185 |
| GlaI | GCGC | 1 cut(s) | 133 |
| GluI | GCNGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 1 cut(s) | 135 |
| HhaI | GCGC | 1 cut(s) | 134 |
| Hin1II | CATG | 1 cut(s) | 27 |
| Hin6I | GCGC | 1 cut(s) | 132 |
| HinP1I | GCGC | 1 cut(s) | 132 |
| HphI | GGTGA | 1 cut(s) | 29 |
| Hpy188I | TCNGA | 2 cut(s) | 149, 301 |
| HpyAV | CCTTC | 1 cut(s) | 256 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| Hsp92II | CATG | 1 cut(s) | 27 |
| HspAI | GCGC | 1 cut(s) | 132 |
| Kzo9I | GATC | 1 cut(s) | 101 |
| LmnI | GCTCC | 1 cut(s) | 32 |
| LpnPI | CCDG | 8 cut(s) | 60, 87, 99, 110, 126, 253, 257, 263 |
| Lsp1109I | GCAGC | 1 cut(s) | 196 |
| MaeIII | GTNAC | 2 cut(s) | 7, 17 |
| MalI | GATC | 1 cut(s) | 103 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboI | GATC | 1 cut(s) | 101 |
| MluCI | AATT | 3 cut(s) | 81, 221, 237 |
| MnlI | CCTC | 5 cut(s) | 75, 79, 152, 216, 295 |
| MseI | TTAA | 2 cut(s) | 84, 198 |
| MspR9I | CCNGG | 2 cut(s) | 75, 114 |
| MvaI | CCWGG | 2 cut(s) | 75, 114 |
| MvnI | CGCG | 1 cut(s) | 134 |
| NdeII | GATC | 1 cut(s) | 101 |
| NlaIII | CATG | 1 cut(s) | 27 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| NmuCI | GTSAC | 2 cut(s) | 7, 17 |
| NspI | RCATGY | 1 cut(s) | 27 |
| PciI | ACATGT | 1 cut(s) | 23 |
| PfoI | TCCNGGA | 1 cut(s) | 112 |
| PkrI | GCNGC | 1 cut(s) | 186 |
| PscI | ACATGT | 1 cut(s) | 23 |
| Psp6I | CCWGG | 2 cut(s) | 73, 112 |
| PspGI | CCWGG | 2 cut(s) | 73, 112 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 214 |
| RsaNI | GTAC | 1 cut(s) | 213 |
| SaqAI | TTAA | 2 cut(s) | 84, 198 |
| SatI | GCNGC | 1 cut(s) | 185 |
| Sau3AI | GATC | 1 cut(s) | 101 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 2 cut(s) | 75, 114 |
| SetI | ASST | 4 cut(s) | 47, 79, 124, 163 |
| SinI | GGWCC | 1 cut(s) | 60 |
| Sse9I | AATT | 3 cut(s) | 81, 221, 237 |
| SsiI | CCGC | 3 cut(s) | 35, 128, 134 |
| SspI | AATATT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 2 cut(s) | 73, 112 |
| StyI | CCWWGG | 1 cut(s) | 255 |
| TaqI | TCGA | 1 cut(s) | 55 |
| TasI | AATT | 3 cut(s) | 81, 221, 237 |
| Tru1I | TTAA | 2 cut(s) | 84, 198 |
| Tru9I | TTAA | 2 cut(s) | 84, 198 |
| TseFI | GTSAC | 2 cut(s) | 7, 17 |
| TseI | GCWGC | 1 cut(s) | 184 |
| Tsp45I | GTSAC | 2 cut(s) | 7, 17 |
| TspDTI | ATGAA | 2 cut(s) | 17, 104 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XceI | RCATGY | 1 cut(s) | 27 |