Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 7 - 89 | 3.4e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 61, 276 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 334 |
| AluBI | AGCT | 3 cut(s) | 32, 157, 239 |
| AluI | AGCT | 3 cut(s) | 32, 157, 239 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| AspS9I | GGNCC | 1 cut(s) | 97 |
| AvaII | GGWCC | 1 cut(s) | 97 |
| BanII | GRGCYC | 1 cut(s) | 159 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BccI | CCATC | 2 cut(s) | 20, 275 |
| BceAI | ACGGC | 1 cut(s) | 51 |
| BfaI | CTAG | 4 cut(s) | 191, 233, 248, 327 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| Bme18I | GGWCC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 1 cut(s) | 97 |
| BmiI | GGNNCC | 1 cut(s) | 98 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 2 cut(s) | 144, 288 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp143I | GATC | 1 cut(s) | 213 |
| BspACI | CCGC | 2 cut(s) | 61, 276 |
| BspCNI | CTCAG | 2 cut(s) | 145, 289 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 98 |
| BssMI | GATC | 1 cut(s) | 213 |
| Bst4CI | ACNGT | 1 cut(s) | 313 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 1 cut(s) | 82 |
| BstDEI | CTNAG | 2 cut(s) | 153, 297 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 216 |
| BstMBI | GATC | 1 cut(s) | 213 |
| BstNSI | RCATGY | 1 cut(s) | 132 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 1 cut(s) | 82 |
| CciI | TCATGA | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 1 cut(s) | 97 |
| CviAII | CATG | 2 cut(s) | 89, 129 |
| CviJI | RGCY | 4 cut(s) | 32, 80, 157, 239 |
| CviKI_1 | RGCY | 4 cut(s) | 32, 80, 157, 239 |
| DdeI | CTNAG | 2 cut(s) | 153, 297 |
| DpnI | GATC | 1 cut(s) | 215 |
| DpnII | GATC | 1 cut(s) | 213 |
| DraI | TTTAAA | 1 cut(s) | 354 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| Ecl136II | GAGCTC | 1 cut(s) | 157 |
| Eco24I | GRGCYC | 1 cut(s) | 159 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 1 cut(s) | 97 |
| Eco53kI | GAGCTC | 1 cut(s) | 157 |
| EcoICRI | GAGCTC | 1 cut(s) | 157 |
| EcoO109I | RGGNCCY | 1 cut(s) | 97 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EcoT38I | GRGCYC | 1 cut(s) | 159 |
| FaeI | CATG | 2 cut(s) | 92, 132 |
| FatI | CATG | 2 cut(s) | 88, 128 |
| FauI | CCCGC | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| FokI | GGATG | 1 cut(s) | 38 |
| FriOI | GRGCYC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| FspBI | CTAG | 4 cut(s) | 191, 233, 248, 327 |
| GluI | GCNGC | 1 cut(s) | 276 |
| Hin1II | CATG | 2 cut(s) | 92, 132 |
| HinfI | GANTC | 1 cut(s) | 221 |
| Hpy166II | GTNNAC | 1 cut(s) | 253 |
| Hpy188I | TCNGA | 3 cut(s) | 213, 226, 298 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 191, 233 |
| Hpy8I | GTNNAC | 1 cut(s) | 253 |
| HpyCH4III | ACNGT | 1 cut(s) | 313 |
| HpyF3I | CTNAG | 2 cut(s) | 153, 297 |
| Hsp92II | CATG | 2 cut(s) | 92, 132 |
| Kzo9I | GATC | 1 cut(s) | 213 |
| LmnI | GCTCC | 1 cut(s) | 29 |
| LpnPI | CCDG | 2 cut(s) | 159, 399 |
| MaeI | CTAG | 4 cut(s) | 191, 233, 248, 327 |
| MalI | GATC | 1 cut(s) | 215 |
| MboI | GATC | 1 cut(s) | 213 |
| MboII | GAAGA | 2 cut(s) | 196, 272 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 4 cut(s) | 102, 182, 408, 414 |
| MlyI | GAGTC | 1 cut(s) | 230 |
| MnlI | CCTC | 4 cut(s) | 85, 118, 219, 256 |
| MseI | TTAA | 4 cut(s) | 18, 303, 353, 413 |
| NdeII | GATC | 1 cut(s) | 213 |
| NlaIII | CATG | 2 cut(s) | 92, 132 |
| NlaIV | GGNNCC | 1 cut(s) | 98 |
| NspI | RCATGY | 1 cut(s) | 132 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| PleI | GAGTC | 1 cut(s) | 229 |
| PpsI | GAGTC | 1 cut(s) | 229 |
| PpuMI | RGGWCCY | 1 cut(s) | 97 |
| Psp124BI | GAGCTC | 1 cut(s) | 159 |
| Psp5II | RGGWCCY | 1 cut(s) | 97 |
| PspN4I | GGNNCC | 1 cut(s) | 98 |
| PspPI | GGNCC | 1 cut(s) | 97 |
| PspPPI | RGGWCCY | 1 cut(s) | 97 |
| SacI | GAGCTC | 1 cut(s) | 159 |
| SaqAI | TTAA | 4 cut(s) | 18, 303, 353, 413 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau3AI | GATC | 1 cut(s) | 213 |
| Sau96I | GGNCC | 1 cut(s) | 97 |
| SchI | GAGTC | 1 cut(s) | 230 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SetI | ASST | 5 cut(s) | 34, 73, 159, 178, 241 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SinI | GGWCC | 1 cut(s) | 97 |
| Sse9I | AATT | 4 cut(s) | 102, 182, 408, 414 |
| SsiI | CCGC | 2 cut(s) | 61, 276 |
| SspMI | CTAG | 4 cut(s) | 191, 233, 248, 327 |
| SstI | GAGCTC | 1 cut(s) | 159 |
| TaaI | ACNGT | 1 cut(s) | 313 |
| TaqII | GACCGA | 1 cut(s) | 130 |
| TasI | AATT | 4 cut(s) | 102, 182, 408, 414 |
| TauI | GCSGC | 1 cut(s) | 278 |
| Tru1I | TTAA | 4 cut(s) | 18, 303, 353, 413 |
| Tru9I | TTAA | 4 cut(s) | 18, 303, 353, 413 |
| TspDTI | ATGAA | 1 cut(s) | 353 |
| VpaK11BI | GGWCC | 1 cut(s) | 97 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XbaI | TCTAGA | 2 cut(s) | 190, 232 |
| XceI | RCATGY | 1 cut(s) | 132 |
| XspI | CTAG | 4 cut(s) | 191, 233, 248, 327 |