Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 575 |
| AciI | CCGC | 4 cut(s) | 371, 779, 801, 812 |
| AcoI | YGGCCR | 2 cut(s) | 368, 842 |
| AcsI | RAATTY | 3 cut(s) | 84, 233, 407 |
| AfaI | GTAC | 3 cut(s) | 142, 199, 544 |
| AgsI | TTSAA | 5 cut(s) | 36, 83, 632, 707, 757 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 654 |
| AjnI | CCWGG | 2 cut(s) | 424, 887 |
| AluBI | AGCT | 6 cut(s) | 32, 47, 103, 206, 511, 521 |
| AluI | AGCT | 6 cut(s) | 32, 47, 103, 206, 511, 521 |
| Alw21I | GWGCWC | 2 cut(s) | 855, 871 |
| Alw26I | GTCTC | 2 cut(s) | 203, 641 |
| Alw44I | GTGCAC | 1 cut(s) | 867 |
| Ama87I | CYCGRG | 1 cut(s) | 762 |
| AoxI | GGCC | 3 cut(s) | 368, 842, 885 |
| ApaLI | GTGCAC | 1 cut(s) | 867 |
| ApeKI | GCWGC | 3 cut(s) | 183, 429, 493 |
| ApoI | RAATTY | 3 cut(s) | 84, 233, 407 |
| AspLEI | GCGC | 1 cut(s) | 817 |
| AsuC2I | CCSGG | 2 cut(s) | 763, 764 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 742 |
| AvaI | CYCGRG | 1 cut(s) | 762 |
| BaeGI | GKGCMC | 1 cut(s) | 871 |
| Bbv12I | GWGCWC | 2 cut(s) | 855, 871 |
| BbvI | GCAGC | 3 cut(s) | 170, 416, 480 |
| BccI | CCATC | 3 cut(s) | 337, 402, 834 |
| BciT130I | CCWGG | 2 cut(s) | 426, 889 |
| BcnI | CCSGG | 2 cut(s) | 763, 764 |
| BcoDI | GTCTC | 2 cut(s) | 203, 641 |
| BfaI | CTAG | 3 cut(s) | 276, 300, 863 |
| BfoI | RGCGCY | 1 cut(s) | 818 |
| BfuAI | ACCTGC | 1 cut(s) | 575 |
| BisI | GCNGC | 5 cut(s) | 184, 371, 430, 494, 813 |
| BlsI | GCNGC | 5 cut(s) | 185, 372, 431, 495, 814 |
| Bme1390I | CCNGG | 4 cut(s) | 426, 763, 764, 889 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 654 |
| BmeT110I | CYCGRG | 1 cut(s) | 762 |
| BmrFI | CCNGG | 4 cut(s) | 426, 763, 764, 889 |
| BpmI | CTGGAG | 3 cut(s) | 82, 172, 408 |
| BpuMI | CCSGG | 2 cut(s) | 763, 764 |
| BsaJI | CCNNGG | 3 cut(s) | 761, 762, 888 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 535, 565 |
| BseBI | CCWGG | 2 cut(s) | 426, 889 |
| BseDI | CCNNGG | 3 cut(s) | 761, 762, 888 |
| BseGI | GGATG | 3 cut(s) | 129, 343, 845 |
| BseMII | CTCAG | 2 cut(s) | 198, 216 |
| BseSI | GKGCMC | 1 cut(s) | 871 |
| BseXI | GCAGC | 3 cut(s) | 170, 416, 480 |
| BseYI | CCCAGC | 2 cut(s) | 686, 817 |
| BsgI | GTGCAG | 1 cut(s) | 625 |
| BshFI | GGCC | 3 cut(s) | 370, 844, 887 |
| BsiHKAI | GWGCWC | 2 cut(s) | 855, 871 |
| BsiHKCI | CYCGRG | 1 cut(s) | 762 |
| BsiSI | CCGG | 1 cut(s) | 763 |
| BslFI | GGGAC | 1 cut(s) | 703 |
| BsmAI | GTCTC | 2 cut(s) | 203, 641 |
| BsmBI | CGTCTC | 1 cut(s) | 641 |
| BsmFI | GGGAC | 1 cut(s) | 703 |
| BsmI | GAATGC | 1 cut(s) | 773 |
| BsnI | GGCC | 3 cut(s) | 370, 844, 887 |
| BsoBI | CYCGRG | 1 cut(s) | 762 |
| Bsp1286I | GDGCHC | 2 cut(s) | 855, 871 |
| Bsp143I | GATC | 1 cut(s) | 96 |
| BspACI | CCGC | 4 cut(s) | 371, 779, 801, 812 |
| BspANI | GGCC | 3 cut(s) | 370, 844, 887 |
| BspCNI | CTCAG | 2 cut(s) | 199, 217 |
| BspMI | ACCTGC | 1 cut(s) | 575 |
| BssECI | CCNNGG | 3 cut(s) | 761, 762, 888 |
| BssMI | GATC | 1 cut(s) | 96 |
| Bst2UI | CCWGG | 2 cut(s) | 426, 889 |
| Bst4CI | ACNGT | 3 cut(s) | 652, 788, 850 |
| Bst6I | CTCTTC | 1 cut(s) | 621 |
| BstC8I | GCNNGC | 1 cut(s) | 799 |
| BstDEI | CTNAG | 3 cut(s) | 207, 225, 700 |
| BstF5I | GGATG | 3 cut(s) | 129, 343, 845 |
| BstH2I | RGCGCY | 1 cut(s) | 818 |
| BstHHI | GCGC | 1 cut(s) | 817 |
| BstKTI | GATC | 1 cut(s) | 99 |
| BstMAI | GTCTC | 2 cut(s) | 203, 641 |
| BstMBI | GATC | 1 cut(s) | 96 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 581, 850 |
| BstNI | CCWGG | 2 cut(s) | 426, 889 |
| BstSCI | CCNGG | 4 cut(s) | 424, 761, 762, 887 |
| BstSLI | GKGCMC | 1 cut(s) | 871 |
| BstV1I | GCAGC | 3 cut(s) | 170, 416, 480 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 401 |
| BsuRI | GGCC | 3 cut(s) | 370, 844, 887 |
| BtsCI | GGATG | 3 cut(s) | 129, 343, 845 |
| BveI | ACCTGC | 1 cut(s) | 575 |
| Cac8I | GCNNGC | 1 cut(s) | 799 |
| CfoI | GCGC | 1 cut(s) | 817 |
| Cfr9I | CCCGGG | 1 cut(s) | 762 |
| CseI | GACGC | 1 cut(s) | 644 |
| Csp6I | GTAC | 3 cut(s) | 141, 198, 543 |
| CviAII | CATG | 3 cut(s) | 125, 221, 401 |
| CviQI | GTAC | 3 cut(s) | 141, 198, 543 |
| DdeI | CTNAG | 3 cut(s) | 207, 225, 700 |
| DpnI | GATC | 1 cut(s) | 98 |
| DpnII | GATC | 1 cut(s) | 96 |
| DriI | GACNNNNNGTC | 1 cut(s) | 654 |
| EaeI | YGGCCR | 2 cut(s) | 368, 842 |
| Eam1104I | CTCTTC | 1 cut(s) | 621 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 654 |
| EarI | CTCTTC | 1 cut(s) | 621 |
| Eco147I | AGGCCT | 1 cut(s) | 887 |
| Eco88I | CYCGRG | 1 cut(s) | 762 |
| EcoRII | CCWGG | 2 cut(s) | 424, 887 |
| Esp3I | CGTCTC | 1 cut(s) | 641 |
| FaeI | CATG | 3 cut(s) | 128, 224, 404 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 495, 527 |
| FaqI | GGGAC | 1 cut(s) | 703 |
| FatI | CATG | 3 cut(s) | 124, 220, 400 |
| FauNDI | CATATG | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 5 cut(s) | 184, 371, 430, 494, 813 |
| FokI | GGATG | 3 cut(s) | 116, 350, 852 |
| Fsp4HI | GCNGC | 5 cut(s) | 184, 371, 430, 494, 813 |
| FspBI | CTAG | 3 cut(s) | 276, 300, 863 |
| GlaI | GCGC | 1 cut(s) | 816 |
| GluI | GCNGC | 5 cut(s) | 184, 371, 430, 494, 813 |
| GsaI | CCCAGC | 2 cut(s) | 690, 821 |
| GsuI | CTGGAG | 3 cut(s) | 82, 172, 408 |
| HaeII | RGCGCY | 1 cut(s) | 818 |
| HaeIII | GGCC | 3 cut(s) | 370, 844, 887 |
| HapII | CCGG | 1 cut(s) | 763 |
| HgaI | GACGC | 1 cut(s) | 644 |
| HhaI | GCGC | 1 cut(s) | 817 |
| Hin1II | CATG | 3 cut(s) | 128, 224, 404 |
| Hin6I | GCGC | 1 cut(s) | 815 |
| HinP1I | GCGC | 1 cut(s) | 815 |
| HincII | GTYRAC | 1 cut(s) | 784 |
| HindII | GTYRAC | 1 cut(s) | 784 |
| HindIII | AAGCTT | 2 cut(s) | 30, 101 |
| HinfI | GANTC | 3 cut(s) | 272, 283, 824 |
| HpaII | CCGG | 1 cut(s) | 763 |
| HphI | GGTGA | 2 cut(s) | 38, 742 |
| Hpy166II | GTNNAC | 2 cut(s) | 784, 869 |
| Hpy188I | TCNGA | 2 cut(s) | 243, 673 |
| Hpy188III | TCNNGA | 3 cut(s) | 61, 189, 276 |
| Hpy8I | GTNNAC | 2 cut(s) | 784, 869 |
| Hpy99I | CGWCG | 1 cut(s) | 850 |
| HpyAV | CCTTC | 3 cut(s) | 143, 328, 763 |
| HpyCH4III | ACNGT | 3 cut(s) | 652, 788, 850 |
| HpyCH4IV | ACGT | 1 cut(s) | 380 |
| HpyCH4V | TGCA | 7 cut(s) | 432, 496, 642, 740, 771, 869, 882 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 581, 850 |
| HpyF3I | CTNAG | 3 cut(s) | 207, 225, 700 |
| HpySE526I | ACGT | 1 cut(s) | 380 |
| Hsp92II | CATG | 3 cut(s) | 128, 224, 404 |
| HspAI | GCGC | 1 cut(s) | 815 |
| Kzo9I | GATC | 1 cut(s) | 96 |
| LmnI | GCTCC | 2 cut(s) | 191, 518 |
| Lsp1109I | GCAGC | 3 cut(s) | 170, 416, 480 |
| MaeI | CTAG | 3 cut(s) | 276, 300, 863 |
| MaeII | ACGT | 1 cut(s) | 380 |
| MaeIII | GTNAC | 4 cut(s) | 284, 361, 559, 748 |
| MalI | GATC | 1 cut(s) | 98 |
| MboI | GATC | 1 cut(s) | 96 |
| MboII | GAAGA | 4 cut(s) | 265, 389, 608, 719 |
| MhlI | GDGCHC | 2 cut(s) | 855, 871 |
| MluCI | AATT | 5 cut(s) | 84, 233, 347, 407, 412 |
| MlyI | GAGTC | 1 cut(s) | 292 |
| MmeI | TCCRAC | 1 cut(s) | 221 |
| MnlI | CCTC | 4 cut(s) | 466, 679, 685, 802 |
| MseI | TTAA | 5 cut(s) | 147, 411, 468, 578, 895 |
| MslI | CAYNNNNRTG | 1 cut(s) | 399 |
| MspI | CCGG | 1 cut(s) | 763 |
| MspR9I | CCNGG | 4 cut(s) | 426, 763, 764, 889 |
| Mva1269I | GAATGC | 1 cut(s) | 773 |
| MvaI | CCWGG | 2 cut(s) | 426, 889 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 581, 850 |
| NciI | CCSGG | 2 cut(s) | 763, 764 |
| NdeI | CATATG | 1 cut(s) | 327 |
| NdeII | GATC | 1 cut(s) | 96 |
| NlaIII | CATG | 3 cut(s) | 128, 224, 404 |
| NmuCI | GTSAC | 2 cut(s) | 284, 748 |
| PceI | AGGCCT | 1 cut(s) | 887 |
| PctI | GAATGC | 1 cut(s) | 773 |
| PfeI | GAWTC | 2 cut(s) | 272, 824 |
| PkrI | GCNGC | 5 cut(s) | 185, 372, 431, 495, 814 |
| PleI | GAGTC | 1 cut(s) | 291 |
| PpsI | GAGTC | 1 cut(s) | 291 |
| Psp6I | CCWGG | 2 cut(s) | 424, 887 |
| PspFI | CCCAGC | 2 cut(s) | 686, 817 |
| PspGI | CCWGG | 2 cut(s) | 424, 887 |
| RsaI | GTAC | 3 cut(s) | 142, 199, 544 |
| RsaNI | GTAC | 3 cut(s) | 141, 198, 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 399 |
| SaqAI | TTAA | 5 cut(s) | 147, 411, 468, 578, 895 |
| SatI | GCNGC | 5 cut(s) | 184, 371, 430, 494, 813 |
| Sau3AI | GATC | 1 cut(s) | 96 |
| SchI | GAGTC | 1 cut(s) | 292 |
| ScrFI | CCNGG | 4 cut(s) | 426, 763, 764, 889 |
| SduI | GDGCHC | 2 cut(s) | 855, 871 |
| SmaI | CCCGGG | 1 cut(s) | 764 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 399 |
| Sse9I | AATT | 5 cut(s) | 84, 233, 347, 407, 412 |
| SseBI | AGGCCT | 1 cut(s) | 887 |
| SsiI | CCGC | 4 cut(s) | 371, 779, 801, 812 |
| SspMI | CTAG | 3 cut(s) | 276, 300, 863 |
| StuI | AGGCCT | 1 cut(s) | 887 |
| StyD4I | CCNGG | 4 cut(s) | 424, 761, 762, 887 |
| TaaI | ACNGT | 3 cut(s) | 652, 788, 850 |
| TaiI | ACGT | 1 cut(s) | 383 |
| TasI | AATT | 5 cut(s) | 84, 233, 347, 407, 412 |
| TauI | GCSGC | 2 cut(s) | 373, 815 |
| TfiI | GAWTC | 2 cut(s) | 272, 824 |
| Tru1I | TTAA | 5 cut(s) | 147, 411, 468, 578, 895 |
| Tru9I | TTAA | 5 cut(s) | 147, 411, 468, 578, 895 |
| TseFI | GTSAC | 2 cut(s) | 284, 748 |
| TseI | GCWGC | 3 cut(s) | 183, 429, 493 |
| Tsp45I | GTSAC | 2 cut(s) | 284, 748 |
| TspDTI | ATGAA | 4 cut(s) | 57, 209, 389, 650 |
| TspMI | CCCGGG | 1 cut(s) | 762 |
| VneI | GTGCAC | 1 cut(s) | 867 |
| XapI | RAATTY | 3 cut(s) | 84, 233, 407 |
| XbaI | TCTAGA | 1 cut(s) | 275 |
| XmaI | CCCGGG | 1 cut(s) | 762 |
| XspI | CTAG | 3 cut(s) | 276, 300, 863 |