RchiOBHm_Chr7g0208481

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000072
Physical Location & Seq
Forward (+)
25904253 .. 25906000
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18658

Sequence Viewer

Length: 957 bp
ATGCTTAAAGCTAAGTATTATCCTAAACATAATGTGATGGAAGCAAAGTTGGGGTCTAATGCTTCTTTTTTATGGAGATCCTTTATTTGGGGTAAAGAGCTCTTAGAAAAGGGTGTTCGATGGAGGGTGGGAGATGGACGAAGTATAAAAGTGTTTGGAGATCCTTGGGTTCCTGGTCTGGAGAATTTCAAATTATCAAGTAGAAATGGGGTCGATTCTGATATGTTTGTGGCAAACTTGATGGTGGAGCGAGGTGTATGGAATCTGTCACTTTTGGAGCAAATTTTTAGTGAGCAAGAACGAGAAGCAATTCTGAAGATTCCCCTCATTAGAACTGGTAGACCAGATGCCTGCATTTGGAATTATTGCAAAAATGGGAGATATGAAGTGAAGAGTGGCTACTGGTTGGCAAGAGAGGAGGTCAGGGAGGCTAGCCTGAATCATGTTTTTGCTCCCTTGCATTACTGGAAGCATTTGTGGAAACTCAAAGTTCCCCCAAAGATGCTTCATTTCTTATGGCGCTGTTCTATGGGTTTTATCCCATGCATGGAGGCGCTTCAGTGGAAGAGGATTACTCAGACGGCTCAATGTTTCCGGTGCCAACAAGAGAATGAATCGCCTGTACACGCAACATGGAGTTGTGCGGCCTGCGTTGCGGTGTTTGAAAGGGCGACTTTTTTCTCTTCTTTGTCATCGGGTCAGTATCCCTCGTTTATTTCTTTTTTTGATCATGCGATGAAAACTGTGGCAGATGAGGAGCTCCAGCTGCTTGTTATCTTGCTTTGGATGAACTGGCATGATCGAAATAAGGCTTATCATCAAGAAAGTACTGAGACGTCTGATCGTATATTTGATAATGGTGTGAGACTTTTGGCTGAATGGAATAATGCAAATATTAGAAATGGGACCGCAAATAGAGATAGTGGAGCTACTTTTACTGGGGATGTGGAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

318

Amino Acids

36.95

Weight (kDa)

8.56

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 128 - 216 1.2e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 597
AccI GTMKAC 1 cut(s) 340
AciI CCGC 3 cut(s) 644, 656, 909
AclWI GGATC 2 cut(s) 72, 155
AcsI RAATTY 2 cut(s) 184, 282
AcuI CTGAAG 2 cut(s) 335, 542
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 2 cut(s) 624, 829
AfiI CCNNNNNNNGG 3 cut(s) 87, 357, 547
AgsI TTSAA 2 cut(s) 190, 665
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 5 cut(s) 11, 100, 760, 766, 929
AluI AGCT 5 cut(s) 11, 100, 760, 766, 929
Alw21I GWGCWC 2 cut(s) 102, 762
Alw26I GTCTC 2 cut(s) 827, 859
AlwI GGATC 2 cut(s) 72, 155
AoxI GGCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 2 cut(s) 184, 282
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 522, 556
AspS9I GGNCC 1 cut(s) 906
AsuNHI GCTAGC 1 cut(s) 431
AvaII GGWCC 1 cut(s) 906
BanI GGYRCC 1 cut(s) 597
BanII GRGCYC 2 cut(s) 102, 762
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
Bbv12I GWGCWC 2 cut(s) 102, 762
BbvI GCAGC 1 cut(s) 753
BccI CCATC 4 cut(s) 31, 114, 128, 235
BceAI ACGGC 1 cut(s) 597
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 714
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 2 cut(s) 827, 859
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 523, 557
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 2 cut(s) 645, 767
BlsI GCNGC 2 cut(s) 646, 768
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 906
BmgT120I GGNCC 1 cut(s) 906
BmiI GGNNCC 3 cut(s) 171, 599, 907
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 2 cut(s) 337, 492
BmtI GCTAGC 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 559, 591
BpmI CTGGAG 2 cut(s) 200, 746
BsaHI GRCGYC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 594
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 357, 547
Bse1I ACTGG 5 cut(s) 340, 407, 470, 797, 943
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 792, 949
BseLI CCNNNNNNNGG 3 cut(s) 87, 357, 547
BseMII CTCAG 2 cut(s) 590, 822
BseNI ACTGG 5 cut(s) 340, 407, 470, 797, 943
BseRI GAGGAG 2 cut(s) 431, 770
BseXI GCAGC 1 cut(s) 753
BshFI GGCC 1 cut(s) 647
BshNI GGYRCC 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 102, 762
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 1 cut(s) 919
BslI CCNNNNNNNGG 3 cut(s) 87, 357, 547
BsmAI GTCTC 2 cut(s) 827, 859
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 919
BsnI GGCC 1 cut(s) 647
Bsp1286I GDGCHC 2 cut(s) 102, 762
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 5 cut(s) 77, 160, 727, 799, 841
BspACI CCGC 3 cut(s) 644, 656, 909
BspANI GGCC 1 cut(s) 647
BspCNI CTCAG 2 cut(s) 589, 823
BspLI GGNNCC 3 cut(s) 171, 599, 907
BspOI GCTAGC 1 cut(s) 435
BspPI GGATC 2 cut(s) 72, 155
BspT107I GGYRCC 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 5 cut(s) 340, 407, 470, 797, 943
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 5 cut(s) 77, 160, 727, 799, 841
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 3 cut(s) 386, 560, 688
BstACI GRCGYC 1 cut(s) 836
BstAUI TGTACA 1 cut(s) 622
BstC8I GCNNGC 3 cut(s) 352, 433, 649
BstDEI CTNAG 4 cut(s) 12, 103, 576, 831
BstF5I GGATG 2 cut(s) 792, 949
BstH2I RGCGCY 2 cut(s) 523, 557
BstHHI GCGC 2 cut(s) 522, 556
BstKTI GATC 5 cut(s) 80, 163, 730, 802, 844
BstMAI GTCTC 2 cut(s) 827, 859
BstMBI GATC 5 cut(s) 77, 160, 727, 799, 841
BstMWI GCNNNNNNNGC 2 cut(s) 653, 766
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 77, 160
BstYI RGATCY 2 cut(s) 77, 160
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 647
BtgZI GCGATG 1 cut(s) 749
BtsCI GGATG 2 cut(s) 792, 949
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 352, 433, 649
CfoI GCGC 2 cut(s) 522, 556
Cfr13I GGNCC 1 cut(s) 906
Csp6I GTAC 2 cut(s) 623, 828
CviAII CATG 6 cut(s) 443, 543, 547, 633, 731, 797
CviQI GTAC 2 cut(s) 623, 828
DdeI CTNAG 4 cut(s) 12, 103, 576, 831
DpnI GATC 5 cut(s) 79, 162, 729, 801, 843
DpnII GATC 5 cut(s) 77, 160, 727, 799, 841
Eam1104I CTCTTC 3 cut(s) 386, 560, 688
EarI CTCTTC 3 cut(s) 386, 560, 688
Ecl136II GAGCTC 2 cut(s) 100, 760
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 102, 762
Eco47I GGWCC 1 cut(s) 906
Eco53kI GAGCTC 2 cut(s) 100, 760
Eco57I CTGAAG 2 cut(s) 335, 542
EcoICRI GAGCTC 2 cut(s) 100, 760
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 548
EcoT38I GRGCYC 2 cut(s) 102, 762
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 6 cut(s) 446, 546, 550, 636, 734, 800
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FaqI GGGAC 1 cut(s) 919
FatI CATG 6 cut(s) 442, 542, 546, 632, 730, 796
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 645, 767
FokI GGATG 1 cut(s) 799
FriOI GRGCYC 2 cut(s) 102, 762
Fsp4HI GCNGC 2 cut(s) 645, 767
FspBI CTAG 1 cut(s) 432
GlaI GCGC 2 cut(s) 521, 555
GluI GCNGC 2 cut(s) 645, 767
GsuI CTGGAG 2 cut(s) 200, 746
HaeII RGCGCY 2 cut(s) 523, 557
HaeIII GGCC 1 cut(s) 647
HapII CCGG 1 cut(s) 595
HhaI GCGC 2 cut(s) 522, 556
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 6 cut(s) 446, 546, 550, 636, 734, 800
Hin6I GCGC 2 cut(s) 520, 554
HinP1I GCGC 2 cut(s) 520, 554
HinfI GANTC 5 cut(s) 215, 262, 319, 439, 614
HpaII CCGG 1 cut(s) 595
Hpy166II GTNNAC 2 cut(s) 341, 625
Hpy188I TCNGA 4 cut(s) 220, 315, 579, 841
Hpy188III TCNNGA 2 cut(s) 179, 821
Hpy8I GTNNAC 2 cut(s) 341, 625
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 836
HpyCH4V TGCA 5 cut(s) 354, 369, 460, 546, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 766
HpyF3I CTNAG 4 cut(s) 12, 103, 576, 831
HpySE526I ACGT 1 cut(s) 836
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 6 cut(s) 446, 546, 550, 636, 734, 800
HspAI GCGC 2 cut(s) 520, 554
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 5 cut(s) 77, 160, 727, 799, 841
LmnI GCTCC 6 cut(s) 247, 277, 457, 757, 765, 926
Lsp1109I GCAGC 1 cut(s) 753
LweI GCATC 2 cut(s) 337, 492
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 836
MaeIII GTNAC 1 cut(s) 267
MalI GATC 5 cut(s) 79, 162, 729, 801, 843
MboI GATC 5 cut(s) 77, 160, 727, 799, 841
MboII GAAGA 4 cut(s) 328, 403, 577, 675
MflI RGATCY 2 cut(s) 77, 160
MhlI GDGCHC 2 cut(s) 102, 762
MluCI AATT 5 cut(s) 184, 191, 282, 309, 361
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 653, 766
NdeII GATC 5 cut(s) 77, 160, 727, 799, 841
NheI GCTAGC 1 cut(s) 431
NlaIII CATG 6 cut(s) 446, 546, 550, 636, 734, 800
NlaIV GGNNCC 3 cut(s) 171, 599, 907
NmuCI GTSAC 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 5 cut(s) 215, 262, 319, 439, 614
PkrI GCNGC 2 cut(s) 646, 768
Psp124BI GAGCTC 2 cut(s) 102, 762
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 171, 599, 907
PspPI GGNCC 1 cut(s) 906
PsuI RGATCY 2 cut(s) 77, 160
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 2 cut(s) 624, 829
RsaNI GTAC 2 cut(s) 623, 828
SacI GAGCTC 2 cut(s) 102, 762
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 645, 767
Sau3AI GATC 5 cut(s) 77, 160, 727, 799, 841
Sau96I GGNCC 1 cut(s) 906
ScaI AGTACT 1 cut(s) 829
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 102, 762
SetI ASST 8 cut(s) 13, 102, 256, 423, 762, 768, 839, 931
SfaNI GCATC 2 cut(s) 337, 492
SinI GGWCC 1 cut(s) 906
Sse9I AATT 5 cut(s) 184, 191, 282, 309, 361
SsiI CCGC 3 cut(s) 644, 656, 909
SspI AATATT 1 cut(s) 895
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 2 cut(s) 102, 762
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 839
TaqI TCGA 3 cut(s) 118, 213, 802
TasI AATT 5 cut(s) 184, 191, 282, 309, 361
TatI WGTACW 2 cut(s) 622, 827
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 5 cut(s) 215, 262, 319, 439, 614
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 566
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 5 cut(s) 399, 497, 627, 752, 803
TspRI CASTG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 906
XapI RAATTY 2 cut(s) 184, 282
XmiI GTMKAC 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 432
ZraI GACGTC 1 cut(s) 837
ZrmI AGTACT 1 cut(s) 829
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.