Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 166 - 246 | 4.5e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 344 |
| AccII | CGCG | 1 cut(s) | 828 |
| AccIII | TCCGGA | 1 cut(s) | 872 |
| AciI | CCGC | 1 cut(s) | 538 |
| AcoI | YGGCCR | 1 cut(s) | 435 |
| AcsI | RAATTY | 1 cut(s) | 659 |
| AcuI | CTGAAG | 1 cut(s) | 830 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 571 |
| AgsI | TTSAA | 1 cut(s) | 236 |
| AluBI | AGCT | 4 cut(s) | 23, 95, 407, 634 |
| AluI | AGCT | 4 cut(s) | 23, 95, 407, 634 |
| Alw21I | GWGCWC | 1 cut(s) | 454 |
| Alw26I | GTCTC | 3 cut(s) | 270, 774, 790 |
| Alw44I | GTGCAC | 1 cut(s) | 450 |
| Aor13HI | TCCGGA | 1 cut(s) | 872 |
| AoxI | GGCC | 2 cut(s) | 378, 435 |
| ApaLI | GTGCAC | 1 cut(s) | 450 |
| ApoI | RAATTY | 1 cut(s) | 659 |
| AseI | ATTAAT | 1 cut(s) | 210 |
| AspS9I | GGNCC | 1 cut(s) | 574 |
| AvaII | GGWCC | 1 cut(s) | 574 |
| AxyI | CCTNAGG | 1 cut(s) | 790 |
| BaeGI | GKGCMC | 1 cut(s) | 454 |
| BbsI | GAAGAC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 454 |
| BccI | CCATC | 4 cut(s) | 238, 472, 497, 751 |
| BceAI | ACGGC | 1 cut(s) | 736 |
| BcoDI | GTCTC | 3 cut(s) | 270, 774, 790 |
| BfaI | CTAG | 5 cut(s) | 57, 417, 668, 710, 725 |
| Bme18I | GGWCC | 1 cut(s) | 574 |
| BmgT120I | GGNCC | 1 cut(s) | 574 |
| BmiI | GGNNCC | 1 cut(s) | 575 |
| BpiI | GAAGAC | 1 cut(s) | 45 |
| Bsa29I | ATCGAT | 1 cut(s) | 822 |
| BsaJI | CCNNGG | 1 cut(s) | 432 |
| BsaWI | WCCGGW | 1 cut(s) | 872 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 337, 367, 498, 528 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 571 |
| Bse1I | ACTGG | 1 cut(s) | 154 |
| Bse21I | CCTNAGG | 1 cut(s) | 790 |
| BseAI | TCCGGA | 1 cut(s) | 872 |
| BseCI | ATCGAT | 1 cut(s) | 822 |
| BseDI | CCNNGG | 1 cut(s) | 432 |
| BseGI | GGATG | 3 cut(s) | 54, 249, 508 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BseNI | ACTGG | 1 cut(s) | 154 |
| BseRI | GAGGAG | 2 cut(s) | 345, 348 |
| BseSI | GKGCMC | 1 cut(s) | 454 |
| Bsh1236I | CGCG | 1 cut(s) | 828 |
| Bsh1285I | CGRYCG | 1 cut(s) | 826 |
| BshFI | GGCC | 2 cut(s) | 380, 437 |
| BshVI | ATCGAT | 1 cut(s) | 822 |
| BsiEI | CGRYCG | 1 cut(s) | 826 |
| BsiHKAI | GWGCWC | 1 cut(s) | 454 |
| BsiSI | CCGG | 1 cut(s) | 873 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 571 |
| BsmAI | GTCTC | 3 cut(s) | 270, 774, 790 |
| BsmBI | CGTCTC | 1 cut(s) | 774 |
| BsnI | GGCC | 2 cut(s) | 380, 437 |
| Bsp1286I | GDGCHC | 1 cut(s) | 454 |
| Bsp13I | TCCGGA | 1 cut(s) | 872 |
| Bsp143I | GATC | 3 cut(s) | 618, 690, 823 |
| BspACI | CCGC | 1 cut(s) | 538 |
| BspANI | GGCC | 2 cut(s) | 380, 437 |
| BspDI | ATCGAT | 1 cut(s) | 822 |
| BspEI | TCCGGA | 1 cut(s) | 872 |
| BspFNI | CGCG | 1 cut(s) | 828 |
| BspHI | TCATGA | 1 cut(s) | 421 |
| BspLI | GGNNCC | 1 cut(s) | 575 |
| BsrI | ACTGG | 1 cut(s) | 154 |
| BssECI | CCNNGG | 1 cut(s) | 432 |
| BssMI | GATC | 3 cut(s) | 618, 690, 823 |
| Bst6I | CTCTTC | 1 cut(s) | 732 |
| BstDEI | CTNAG | 5 cut(s) | 132, 261, 630, 773, 790 |
| BstF5I | GGATG | 3 cut(s) | 54, 249, 508 |
| BstFNI | CGCG | 1 cut(s) | 828 |
| BstKTI | GATC | 3 cut(s) | 621, 693, 826 |
| BstMAI | GTCTC | 3 cut(s) | 270, 774, 790 |
| BstMBI | GATC | 3 cut(s) | 618, 690, 823 |
| BstMCI | CGRYCG | 1 cut(s) | 826 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 413 |
| BstNSI | RCATGY | 1 cut(s) | 609 |
| BstSLI | GKGCMC | 1 cut(s) | 454 |
| BstUI | CGCG | 1 cut(s) | 828 |
| BstV2I | GAAGAC | 1 cut(s) | 45 |
| Bsu15I | ATCGAT | 1 cut(s) | 822 |
| Bsu36I | CCTNAGG | 1 cut(s) | 790 |
| BsuRI | GGCC | 2 cut(s) | 380, 437 |
| BsuTUI | ATCGAT | 1 cut(s) | 822 |
| BtsCI | GGATG | 3 cut(s) | 54, 249, 508 |
| CciI | TCATGA | 1 cut(s) | 421 |
| Cfr13I | GGNCC | 1 cut(s) | 574 |
| ClaI | ATCGAT | 1 cut(s) | 822 |
| CviAII | CATG | 7 cut(s) | 255, 280, 338, 422, 566, 606, 733 |
| DdeI | CTNAG | 5 cut(s) | 132, 261, 630, 773, 790 |
| DpnI | GATC | 3 cut(s) | 620, 692, 825 |
| DpnII | GATC | 3 cut(s) | 618, 690, 823 |
| EaeI | YGGCCR | 1 cut(s) | 435 |
| Eam1104I | CTCTTC | 1 cut(s) | 732 |
| EarI | CTCTTC | 1 cut(s) | 732 |
| Eco32I | GATATC | 2 cut(s) | 400, 613 |
| Eco47I | GGWCC | 1 cut(s) | 574 |
| Eco57I | CTGAAG | 1 cut(s) | 830 |
| Eco81I | CCTNAGG | 1 cut(s) | 790 |
| EcoO109I | RGGNCCY | 1 cut(s) | 574 |
| EcoRV | GATATC | 2 cut(s) | 400, 613 |
| Esp3I | CGTCTC | 1 cut(s) | 774 |
| FaeI | CATG | 7 cut(s) | 258, 283, 341, 425, 569, 609, 736 |
| FatI | CATG | 7 cut(s) | 254, 279, 337, 421, 565, 605, 732 |
| FauI | CCCGC | 1 cut(s) | 531 |
| FblI | GTMKAC | 1 cut(s) | 344 |
| FokI | GGATG | 3 cut(s) | 61, 256, 515 |
| FspBI | CTAG | 5 cut(s) | 57, 417, 668, 710, 725 |
| HaeIII | GGCC | 2 cut(s) | 380, 437 |
| HapII | CCGG | 1 cut(s) | 873 |
| Hin1II | CATG | 7 cut(s) | 258, 283, 341, 425, 569, 609, 736 |
| HindIII | AAGCTT | 1 cut(s) | 405 |
| HinfI | GANTC | 3 cut(s) | 61, 283, 783 |
| HpaII | CCGG | 1 cut(s) | 873 |
| Hpy166II | GTNNAC | 3 cut(s) | 345, 452, 730 |
| Hpy188I | TCNGA | 2 cut(s) | 690, 810 |
| Hpy188III | TCNNGA | 6 cut(s) | 236, 422, 616, 668, 710, 873 |
| Hpy8I | GTNNAC | 3 cut(s) | 345, 452, 730 |
| Hpy99I | CGWCG | 1 cut(s) | 757 |
| HpyAV | CCTTC | 1 cut(s) | 108 |
| HpyCH4IV | ACGT | 1 cut(s) | 322 |
| HpyCH4V | TGCA | 4 cut(s) | 181, 254, 452, 836 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 413 |
| HpyF3I | CTNAG | 5 cut(s) | 132, 261, 630, 773, 790 |
| HpySE526I | ACGT | 1 cut(s) | 322 |
| Hsp92II | CATG | 7 cut(s) | 258, 283, 341, 425, 569, 609, 736 |
| Kpn2I | TCCGGA | 1 cut(s) | 872 |
| Kzo9I | GATC | 3 cut(s) | 618, 690, 823 |
| LmnI | GCTCC | 2 cut(s) | 100, 584 |
| LpnPI | CCDG | 7 cut(s) | 33, 135, 214, 362, 440, 636, 886 |
| MaeI | CTAG | 5 cut(s) | 57, 417, 668, 710, 725 |
| MaeII | ACGT | 1 cut(s) | 322 |
| MaeIII | GTNAC | 3 cut(s) | 108, 323, 886 |
| MalI | GATC | 3 cut(s) | 620, 692, 825 |
| MboI | GATC | 3 cut(s) | 618, 690, 823 |
| MboII | GAAGA | 5 cut(s) | 45, 210, 673, 725, 749 |
| MhlI | GDGCHC | 1 cut(s) | 454 |
| MluCI | AATT | 2 cut(s) | 297, 659 |
| MlyI | GAGTC | 1 cut(s) | 792 |
| MmeI | TCCRAC | 1 cut(s) | 170 |
| MnlI | CCTC | 8 cut(s) | 366, 369, 388, 442, 562, 595, 691, 696 |
| MroI | TCCGGA | 1 cut(s) | 872 |
| MseI | TTAA | 4 cut(s) | 210, 495, 779, 800 |
| MspI | CCGG | 1 cut(s) | 873 |
| MvnI | CGCG | 1 cut(s) | 828 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 413 |
| NdeII | GATC | 3 cut(s) | 618, 690, 823 |
| NlaIII | CATG | 7 cut(s) | 258, 283, 341, 425, 569, 609, 736 |
| NlaIV | GGNNCC | 1 cut(s) | 575 |
| NmeAIII | GCCGAG | 1 cut(s) | 413 |
| NmuCI | GTSAC | 1 cut(s) | 886 |
| NspI | RCATGY | 1 cut(s) | 609 |
| PagI | TCATGA | 1 cut(s) | 421 |
| PfeI | GAWTC | 2 cut(s) | 61, 283 |
| Ple19I | CGATCG | 1 cut(s) | 826 |
| PleI | GAGTC | 1 cut(s) | 791 |
| PpsI | GAGTC | 1 cut(s) | 791 |
| PpuMI | RGGWCCY | 1 cut(s) | 574 |
| PshBI | ATTAAT | 1 cut(s) | 210 |
| Psp5II | RGGWCCY | 1 cut(s) | 574 |
| PspN4I | GGNNCC | 1 cut(s) | 575 |
| PspPI | GGNCC | 1 cut(s) | 574 |
| PspPPI | RGGWCCY | 1 cut(s) | 574 |
| PvuI | CGATCG | 1 cut(s) | 826 |
| SaqAI | TTAA | 4 cut(s) | 210, 495, 779, 800 |
| Sau3AI | GATC | 3 cut(s) | 618, 690, 823 |
| Sau96I | GGNCC | 1 cut(s) | 574 |
| SchI | GAGTC | 1 cut(s) | 792 |
| SduI | GDGCHC | 1 cut(s) | 454 |
| SetI | ASST | 8 cut(s) | 25, 97, 325, 409, 550, 636, 655, 845 |
| SinI | GGWCC | 1 cut(s) | 574 |
| Sse9I | AATT | 2 cut(s) | 297, 659 |
| SsiI | CCGC | 1 cut(s) | 538 |
| SspI | AATATT | 1 cut(s) | 68 |
| SspMI | CTAG | 5 cut(s) | 57, 417, 668, 710, 725 |
| TaiI | ACGT | 1 cut(s) | 325 |
| TaqI | TCGA | 4 cut(s) | 617, 755, 822, 853 |
| TasI | AATT | 2 cut(s) | 297, 659 |
| TfiI | GAWTC | 2 cut(s) | 61, 283 |
| Tru1I | TTAA | 4 cut(s) | 210, 495, 779, 800 |
| Tru9I | TTAA | 4 cut(s) | 210, 495, 779, 800 |
| TseFI | GTSAC | 1 cut(s) | 886 |
| Tsp45I | GTSAC | 1 cut(s) | 886 |
| TspDTI | ATGAA | 5 cut(s) | 17, 210, 326, 333, 855 |
| VneI | GTGCAC | 1 cut(s) | 450 |
| VpaK11BI | GGWCC | 1 cut(s) | 574 |
| VspI | ATTAAT | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 659 |
| XbaI | TCTAGA | 2 cut(s) | 667, 709 |
| XceI | RCATGY | 1 cut(s) | 609 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 335 |
| XmiI | GTMKAC | 1 cut(s) | 344 |
| XspI | CTAG | 5 cut(s) | 57, 417, 668, 710, 725 |