Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 6 - 93 | 7.7e-14 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 47, 152 |
| AfeI | AGCGCT | 1 cut(s) | 204 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 83, 151 |
| AflIII | ACRYGT | 1 cut(s) | 104 |
| AgsI | TTSAA | 2 cut(s) | 149, 176 |
| AjnI | CCWGG | 3 cut(s) | 76, 114, 216 |
| Aor51HI | AGCGCT | 1 cut(s) | 204 |
| ApeKI | GCWGC | 1 cut(s) | 200 |
| AseI | ATTAAT | 1 cut(s) | 126 |
| AspLEI | GCGC | 2 cut(s) | 29, 205 |
| AspS9I | GGNCC | 1 cut(s) | 51 |
| AvaII | GGWCC | 1 cut(s) | 51 |
| BbvI | GCAGC | 1 cut(s) | 212 |
| BciT130I | CCWGG | 3 cut(s) | 78, 116, 218 |
| BfoI | RGCGCY | 1 cut(s) | 206 |
| BisI | GCNGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 3 cut(s) | 78, 116, 218 |
| Bme18I | GGWCC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 1 cut(s) | 51 |
| BmiI | GGNNCC | 1 cut(s) | 52 |
| BmrFI | CCNGG | 3 cut(s) | 78, 116, 218 |
| BmsI | GCATC | 2 cut(s) | 172, 218 |
| BsaJI | CCNNGG | 2 cut(s) | 77, 258 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 83, 151 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseBI | CCWGG | 3 cut(s) | 78, 116, 218 |
| BseDI | CCNNGG | 2 cut(s) | 77, 258 |
| BseGI | GGATG | 1 cut(s) | 229 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 83, 151 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseXI | GCAGC | 1 cut(s) | 212 |
| BsgI | GTGCAG | 1 cut(s) | 55 |
| BslFI | GGGAC | 2 cut(s) | 18, 64 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 83, 151 |
| BsmFI | GGGAC | 2 cut(s) | 18, 64 |
| BspACI | CCGC | 2 cut(s) | 47, 152 |
| BspLI | GGNNCC | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 77, 258 |
| BssT1I | CCWWGG | 1 cut(s) | 258 |
| Bst2UI | CCWGG | 3 cut(s) | 78, 116, 218 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 1 cut(s) | 207 |
| BstDEI | CTNAG | 1 cut(s) | 92 |
| BstF5I | GGATG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 206 |
| BstHHI | GCGC | 2 cut(s) | 29, 205 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 33, 206 |
| BstNI | CCWGG | 3 cut(s) | 78, 116, 218 |
| BstNSI | RCATGY | 1 cut(s) | 108 |
| BstSCI | CCNGG | 3 cut(s) | 76, 114, 216 |
| BstV1I | GCAGC | 1 cut(s) | 212 |
| BtgZI | GCGATG | 1 cut(s) | 195 |
| BtsCI | GGATG | 1 cut(s) | 229 |
| BtsI | GCAGTG | 2 cut(s) | 36, 43 |
| BtsIMutI | CAGTG | 3 cut(s) | 21, 36, 43 |
| Cac8I | GCNNGC | 1 cut(s) | 207 |
| CfoI | GCGC | 2 cut(s) | 29, 205 |
| Cfr13I | GGNCC | 1 cut(s) | 51 |
| CviAII | CATG | 1 cut(s) | 105 |
| CviJI | RGCY | 3 cut(s) | 71, 119, 242 |
| CviKI_1 | RGCY | 3 cut(s) | 71, 119, 242 |
| DdeI | CTNAG | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 258 |
| Eco47I | GGWCC | 1 cut(s) | 51 |
| Eco47III | AGCGCT | 1 cut(s) | 204 |
| EcoO109I | RGGNCCY | 1 cut(s) | 51 |
| EcoRII | CCWGG | 3 cut(s) | 76, 114, 216 |
| EcoT14I | CCWWGG | 1 cut(s) | 258 |
| ErhI | CCWWGG | 1 cut(s) | 258 |
| FaeI | CATG | 1 cut(s) | 108 |
| FaiI | YATR | 1 cut(s) | 106 |
| FaqI | GGGAC | 2 cut(s) | 18, 64 |
| FatI | CATG | 1 cut(s) | 104 |
| FauI | CCCGC | 2 cut(s) | 40, 145 |
| Fnu4HI | GCNGC | 1 cut(s) | 201 |
| FokI | GGATG | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 1 cut(s) | 201 |
| GlaI | GCGC | 2 cut(s) | 28, 204 |
| GluI | GCNGC | 1 cut(s) | 201 |
| HaeII | RGCGCY | 1 cut(s) | 206 |
| HhaI | GCGC | 2 cut(s) | 29, 205 |
| Hin1II | CATG | 1 cut(s) | 108 |
| Hin6I | GCGC | 2 cut(s) | 27, 203 |
| HinP1I | GCGC | 2 cut(s) | 27, 203 |
| HinfI | GANTC | 2 cut(s) | 254, 271 |
| Hpy166II | GTNNAC | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 1 cut(s) | 235 |
| Hpy8I | GTNNAC | 1 cut(s) | 98 |
| HpyAV | CCTTC | 2 cut(s) | 155, 170 |
| HpyCH4V | TGCA | 3 cut(s) | 36, 136, 209 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 33, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 92 |
| Hsp92II | CATG | 1 cut(s) | 108 |
| HspAI | GCGC | 2 cut(s) | 27, 203 |
| LpnPI | CCDG | 7 cut(s) | 9, 63, 90, 101, 128, 203, 230 |
| Lsp1109I | GCAGC | 1 cut(s) | 212 |
| LweI | GCATC | 2 cut(s) | 172, 218 |
| MboII | GAAGA | 1 cut(s) | 187 |
| MluCI | AATT | 1 cut(s) | 123 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MnlI | CCTC | 2 cut(s) | 214, 229 |
| MseI | TTAA | 2 cut(s) | 122, 126 |
| MslI | CAYNNNNRTG | 2 cut(s) | 103, 168 |
| MspR9I | CCNGG | 3 cut(s) | 78, 116, 218 |
| MvaI | CCWGG | 3 cut(s) | 78, 116, 218 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 33, 206 |
| NlaIII | CATG | 1 cut(s) | 108 |
| NlaIV | GGNNCC | 1 cut(s) | 52 |
| NspI | RCATGY | 1 cut(s) | 108 |
| PacI | TTAATTAA | 1 cut(s) | 126 |
| PciI | ACATGT | 1 cut(s) | 104 |
| PfeI | GAWTC | 1 cut(s) | 254 |
| PkrI | GCNGC | 1 cut(s) | 202 |
| PleI | GAGTC | 1 cut(s) | 279 |
| PpsI | GAGTC | 1 cut(s) | 279 |
| PpuMI | RGGWCCY | 1 cut(s) | 51 |
| PscI | ACATGT | 1 cut(s) | 104 |
| PshBI | ATTAAT | 1 cut(s) | 126 |
| Psp5II | RGGWCCY | 1 cut(s) | 51 |
| Psp6I | CCWGG | 3 cut(s) | 76, 114, 216 |
| PspGI | CCWGG | 3 cut(s) | 76, 114, 216 |
| PspN4I | GGNNCC | 1 cut(s) | 52 |
| PspPI | GGNCC | 1 cut(s) | 51 |
| PspPPI | RGGWCCY | 1 cut(s) | 51 |
| RseI | CAYNNNNRTG | 2 cut(s) | 103, 168 |
| SaqAI | TTAA | 2 cut(s) | 122, 126 |
| SatI | GCNGC | 1 cut(s) | 201 |
| Sau96I | GGNCC | 1 cut(s) | 51 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 3 cut(s) | 78, 116, 218 |
| SetI | ASST | 3 cut(s) | 56, 88, 264 |
| SfaNI | GCATC | 2 cut(s) | 172, 218 |
| SinI | GGWCC | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 103, 168 |
| Sse9I | AATT | 1 cut(s) | 123 |
| SsiI | CCGC | 2 cut(s) | 47, 152 |
| StyD4I | CCNGG | 3 cut(s) | 76, 114, 216 |
| StyI | CCWWGG | 1 cut(s) | 258 |
| TasI | AATT | 1 cut(s) | 123 |
| TfiI | GAWTC | 1 cut(s) | 254 |
| Tru1I | TTAA | 2 cut(s) | 122, 126 |
| Tru9I | TTAA | 2 cut(s) | 122, 126 |
| TscAI | CASTG | 3 cut(s) | 28, 36, 43 |
| TseI | GCWGC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 2 cut(s) | 57, 267 |
| TspRI | CASTG | 3 cut(s) | 28, 36, 43 |
| VpaK11BI | GGWCC | 1 cut(s) | 51 |
| VspI | ATTAAT | 1 cut(s) | 126 |
| XceI | RCATGY | 1 cut(s) | 108 |