Rorug07G0113100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000072
Physical Location & Seq
Forward (+)
8844896 .. 8853008
8113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0113100.1

Sequence Viewer

Length: 1512 bp
ATGGCTCAGTCACTGGTTTCTGCGCGTCATGCTGGTGACAGGCTTTTGAATTGTTGGGGAGTTGGGACTGGCTGGGCTGTGGAGGATACGAAGGACAAGATTACAAAGCTCTTAGATCAGTATGAAAGTGGGGATGTCGTGGCTGAAGCCTGCCAGAGCATTCGTGATATTGGAATGCCTTTATTCAATCACGAGGTGGTGAAGAAGGCACTGGTTTTGGCCATGGAGAAGAATGGCACTATGCTGGATCTGCTTCAGGAGTGCTTCAGCGAAGGACTGATAACAGTCAACCAGATGACAAAAGGCTTTAGCCGGATTAAGGACAAGCTAGATGACTTGGCTCTCGACATTCCAACTGCAAGCTGCCGATCGGAGGATGCAAAACGAATTCTGTGTGAGCAGAATCTTGATCCTACTAGTGATGGAAGAGGACTTCTTCAGTTTAAGACTGGTTTGATCTATATAGAGATGAAAAAGACAATTGCTATCTTGAGGGCATTAGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTATGGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTGATGCAACATTATCTGGGGAGCTCACAGCCTACAATATCGTCCCACTGGAAGCACCATTACTAACCAATGCAATTGGAGTATTTCCGGAAGTTAGAGGTGCGATATTGGCAATTAGATATACTGAACAATTCCCTAGGCTGCCAGCTAAGTTTGAGATATCTGGACAATGGGATGCAGATAAGTATGATCTTCTGGATTATAAAGACAATGTAAGGAACCAGAGAGAGAATTTTGTCCTTACAATTGCAAATGCACAATCTCACCTTGGTATACCTGCTCAGGCTGATCCAGTTGCTCCATTGCAACCTGAAGGTCCCAGGTTTGAAGGGGGAGATAGCCTCTCCCAGATGGGGTCAACAGTCTCTAGGCTCTGCAATGGCTGGATTCCCATGCACATTGAGCTGTCTGTCTCACTGATACGCTATATATTTTTGCATTCCCAGAAAATAGACGAGAAGGCAATCAATGAGATGGCGAAGGAGTTAGATGCTATTCCTGCTGCTAGCTGCACAATAGAAAATGATTCTGTGTCCTTCCTCAAGCAGATTGTTTATCCTATATATGAAACATTGGCAGCGGAAGCTGCTAGAAACAATAACGGGAAAGCTGCGCATTCAGCATGGTGGAATTATGACGACTTAAATGAATACTGTTGCTTTGTTTGCTTGTCACCTGCTTGTTTAGTTGAGCTGACCTATGAGGAGGGATTCAGCATTTTTGCTGAAGCCTTAAAAGAGGAAAAGGGTAGTTTGGATGTGTTGGTCATGTTTGGGGCTTATACCACAGCCAGAGGCATGGCTATCTCAAGACTTGTAATTAGATTTTTCTGGTTTGGCTTCAGCTCTGTTGCTGTGACATATATTTATCTTTTATGCAGCTTTACGCCTAGTCCTTGCGCTGTTACTCAAATTTGTGGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

503

Amino Acids

55.79

Weight (kDa)

4.93

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 31 - 120 7.1e-24 MA3 domain
FKS1_dom1 PF14288 335 - 413 1.9e-13 1,3-beta-glucan synthase subunit FKS1, domain-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 789
AarI CACCTGC 1 cut(s) 1270
Acc16I TGCGCA 2 cut(s) 572, 1200
Acc36I ACCTGC 2 cut(s) 871, 1270
AccI GTMKAC 1 cut(s) 859
AccII CGCG 1 cut(s) 25
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 1 cut(s) 1166
AclWI GGATC 4 cut(s) 255, 404, 530, 869
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 3 cut(s) 387, 817, 1497
AcuI CTGAAG 7 cut(s) 165, 239, 250, 422, 918, 1332, 1411
AdeI CACNNNGTG 1 cut(s) 196
AfiI CCNNNNNNNGG 3 cut(s) 319, 373, 939
AgsI TTSAA 3 cut(s) 49, 187, 914
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 1 cut(s) 905
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 2 cut(s) 955, 1003
AlwI GGATC 4 cut(s) 255, 404, 530, 869
AlwNI CAGNNNCTG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 673
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 8 cut(s) 363, 727, 1088, 1095, 1163, 1172, 1196, 1464
ApoI RAATTY 3 cut(s) 387, 817, 1497
AspA2I CCTAGG 1 cut(s) 722
AspLEI GCGC 4 cut(s) 25, 573, 1201, 1487
AspS9I GGNCC 1 cut(s) 902
AsuHPI GGTGA 4 cut(s) 47, 211, 842, 1251
AsuNHI GCTAGC 1 cut(s) 1091
AvaII GGWCC 1 cut(s) 902
AvrII CCTAGG 1 cut(s) 722
BalI TGGCCA 1 cut(s) 221
BanII GRGCYC 1 cut(s) 612
BarI GAAGNNNNNNTAC 4 cut(s) 544, 576, 630, 662
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 8 cut(s) 350, 714, 1075, 1082, 1159, 1175, 1183, 1476
BccI CCATC 3 cut(s) 416, 931, 1054
BciT130I CCWGG 1 cut(s) 907
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 955, 1003
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 7 cut(s) 329, 417, 723, 954, 1092, 1176, 1476
BfuAI ACCTGC 2 cut(s) 871, 1270
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 8 cut(s) 364, 728, 1089, 1096, 1164, 1173, 1197, 1465
BlnI CCTAGG 1 cut(s) 722
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 8 cut(s) 365, 729, 1090, 1097, 1165, 1174, 1198, 1466
Bme1390I CCNGG 1 cut(s) 907
Bme18I GGWCC 1 cut(s) 902
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 2 cut(s) 806, 904
BmrFI CCNGG 1 cut(s) 907
BmsI GCATC 5 cut(s) 367, 520, 580, 751, 1066
BmtI GCTAGC 1 cut(s) 1095
BplI GAGNNNNNCTC 2 cut(s) 912, 944
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 521
BpuEI CTTGAG 3 cut(s) 511, 1112, 1378
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 4 cut(s) 222, 722, 853, 905
BsaWI WCCGGW 1 cut(s) 673
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 373, 939
Bse1I ACTGG 6 cut(s) 18, 73, 216, 454, 639, 878
Bse3DI GCAATG 2 cut(s) 887, 970
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 673
BseBI CCWGG 1 cut(s) 907
BseDI CCNNGG 4 cut(s) 222, 722, 853, 905
BseGI GGATG 4 cut(s) 139, 382, 766, 1348
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 3 cut(s) 319, 373, 939
BseMI GCAATG 2 cut(s) 887, 970
BseMII CTCAG 2 cut(s) 20, 881
BseNI ACTGG 6 cut(s) 18, 73, 216, 454, 639, 878
BseRI GAGGAG 2 cut(s) 521, 1304
BseXI GCAGC 8 cut(s) 350, 714, 1075, 1082, 1159, 1175, 1183, 1476
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 1081
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 2 cut(s) 313, 674
BslFI GGGAC 3 cut(s) 79, 614, 888
BslI CCNNNNNNNGG 3 cut(s) 319, 373, 939
BsmAI GTCTC 2 cut(s) 955, 1003
BsmFI GGGAC 3 cut(s) 79, 614, 888
BsmI GAATGC 4 cut(s) 159, 180, 1024, 1201
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 612
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
Bsp1720I GCTNAGC 1 cut(s) 521
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 1166
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 19, 880
BspEI TCCGGA 1 cut(s) 673
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 806, 904
BspMI ACCTGC 2 cut(s) 871, 1270
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 4 cut(s) 255, 404, 530, 869
BsrDI GCAATG 2 cut(s) 887, 970
BsrI ACTGG 6 cut(s) 18, 73, 216, 454, 639, 878
BssECI CCNNGG 4 cut(s) 222, 722, 853, 905
BssMI GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
BssNAI GTATAC 1 cut(s) 860
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 3 cut(s) 222, 722, 853
Bst1107I GTATAC 1 cut(s) 860
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 907
Bst4CI ACNGT 3 cut(s) 286, 949, 1241
Bst6I CTCTTC 1 cut(s) 421
BstC8I GCNNGC 4 cut(s) 151, 361, 732, 1093
BstDEI CTNAG 5 cut(s) 6, 112, 521, 735, 867
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 139, 382, 766, 1348
BstFNI CGCG 1 cut(s) 25
BstHHI GCGC 4 cut(s) 25, 573, 1201, 1487
BstKTI GATC 8 cut(s) 118, 250, 371, 412, 459, 538, 778, 877
BstMAI GTCTC 2 cut(s) 955, 1003
BstMBI GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 9 cut(s) 29, 250, 695, 988, 1085, 1169, 1172, 1205, 1251
BstNI CCWGG 1 cut(s) 907
BstNSI RCATGY 1 cut(s) 1510
BstSCI CCNGG 1 cut(s) 905
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 8 cut(s) 350, 714, 1075, 1082, 1159, 1175, 1183, 1476
BstX2I RGATCY 2 cut(s) 247, 535
BstXI CCANNNNNNTGG 1 cut(s) 1384
BstYI RGATCY 2 cut(s) 247, 535
BstZ17I GTATAC 1 cut(s) 860
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 4 cut(s) 139, 382, 766, 1348
BtsIMutI CAGTG 5 cut(s) 11, 209, 585, 632, 1001
BveI ACCTGC 2 cut(s) 871, 1270
Cac8I GCNNGC 4 cut(s) 151, 361, 732, 1093
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 4 cut(s) 25, 573, 1201, 1487
Cfr13I GGNCC 1 cut(s) 902
CseI GACGC 1 cut(s) 14
CviAII CATG 7 cut(s) 29, 223, 979, 1209, 1354, 1384, 1507
DdeI CTNAG 5 cut(s) 6, 112, 521, 735, 867
DpnI GATC 8 cut(s) 117, 249, 370, 411, 458, 537, 777, 876
DpnII GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 3 cut(s) 222, 722, 853
Eco24I GRGCYC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 610
Eco57I CTGAAG 7 cut(s) 165, 239, 250, 422, 918, 1332, 1411
EcoICRI GAGCTC 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 905
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 3 cut(s) 222, 722, 853
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 3 cut(s) 222, 722, 853
FaeI CATG 7 cut(s) 32, 226, 982, 1212, 1357, 1387, 1510
FaqI GGGAC 3 cut(s) 79, 614, 888
FatI CATG 7 cut(s) 28, 222, 978, 1208, 1353, 1383, 1506
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 8 cut(s) 364, 728, 1089, 1096, 1164, 1173, 1197, 1465
FokI GGATG 4 cut(s) 146, 389, 773, 1355
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 8 cut(s) 364, 728, 1089, 1096, 1164, 1173, 1197, 1465
FspBI CTAG 7 cut(s) 329, 417, 723, 954, 1092, 1176, 1476
FspI TGCGCA 2 cut(s) 572, 1200
GlaI GCGC 4 cut(s) 24, 572, 1200, 1486
GluI GCNGC 8 cut(s) 364, 728, 1089, 1096, 1164, 1173, 1197, 1465
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 221
HapII CCGG 2 cut(s) 313, 674
HgaI GACGC 1 cut(s) 14
HhaI GCGC 4 cut(s) 25, 573, 1201, 1487
Hin1II CATG 7 cut(s) 32, 226, 982, 1212, 1357, 1387, 1510
Hin6I GCGC 4 cut(s) 23, 571, 1199, 1485
HinP1I GCGC 4 cut(s) 23, 571, 1199, 1485
HincII GTYRAC 2 cut(s) 289, 945
HindII GTYRAC 2 cut(s) 289, 945
HinfI GANTC 5 cut(s) 403, 515, 973, 1112, 1296
HpaII CCGG 2 cut(s) 313, 674
HphI GGTGA 4 cut(s) 47, 211, 842, 1251
Hpy166II GTNNAC 3 cut(s) 289, 860, 945
Hpy188I TCNGA 1 cut(s) 373
Hpy8I GTNNAC 3 cut(s) 289, 860, 945
HpyAV CCTTC 9 cut(s) 85, 199, 266, 546, 893, 908, 1039, 1060, 1132
HpyCH4III ACNGT 3 cut(s) 286, 949, 1241
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 250, 695, 988, 1085, 1169, 1172, 1205, 1251
HpyF3I CTNAG 5 cut(s) 6, 112, 521, 735, 867
Hsp92II CATG 7 cut(s) 32, 226, 982, 1212, 1357, 1387, 1510
HspAI GCGC 4 cut(s) 23, 571, 1199, 1485
Kpn2I TCCGGA 1 cut(s) 673
Kzo9I GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
LmnI GCTCC 2 cut(s) 607, 889
Lsp1109I GCAGC 8 cut(s) 350, 714, 1075, 1082, 1159, 1175, 1183, 1476
LweI GCATC 5 cut(s) 367, 520, 580, 751, 1066
MaeI CTAG 7 cut(s) 329, 417, 723, 954, 1092, 1176, 1476
MaeIII GTNAC 5 cut(s) 9, 35, 1257, 1441, 1489
MalI GATC 8 cut(s) 117, 249, 370, 411, 458, 537, 777, 876
MboI GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
MboII GAAGA 5 cut(s) 214, 241, 428, 438, 770
MfeI CAATTG 3 cut(s) 480, 660, 831
MflI RGATCY 2 cut(s) 247, 535
MhlI GDGCHC 1 cut(s) 612
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 3 cut(s) 377, 492, 529
Mox20I TGGCCA 1 cut(s) 221
MroI TCCGGA 1 cut(s) 673
MscI TGGCCA 1 cut(s) 221
MseI TTAA 5 cut(s) 318, 444, 579, 1229, 1319
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 1166
MspI CCGG 2 cut(s) 313, 674
MspR9I CCNGG 1 cut(s) 907
MunI CAATTG 3 cut(s) 480, 660, 831
Mva1269I GAATGC 4 cut(s) 159, 180, 1024, 1201
MvaI CCWGG 1 cut(s) 907
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 9 cut(s) 29, 250, 695, 988, 1085, 1169, 1172, 1205, 1251
NcoI CCATGG 1 cut(s) 222
NdeII GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
NheI GCTAGC 1 cut(s) 1091
NlaIII CATG 7 cut(s) 32, 226, 982, 1212, 1357, 1387, 1510
NlaIV GGNNCC 2 cut(s) 806, 904
NmuCI GTSAC 4 cut(s) 9, 35, 1257, 1441
NsbI TGCGCA 2 cut(s) 572, 1200
NspI RCATGY 1 cut(s) 1510
PaqCI CACCTGC 1 cut(s) 1270
PctI GAATGC 4 cut(s) 159, 180, 1024, 1201
PfeI GAWTC 4 cut(s) 403, 973, 1112, 1296
PkrI GCNGC 8 cut(s) 365, 729, 1090, 1097, 1165, 1174, 1198, 1466
Ple19I CGATCG 1 cut(s) 371
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 902
PsiI TTATAA 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 905
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 905
PspN4I GGNNCC 2 cut(s) 806, 904
PspPI GGNCC 1 cut(s) 902
PspPPI RGGWCCY 1 cut(s) 902
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 247, 535
PvuI CGATCG 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 33
SacI GAGCTC 1 cut(s) 612
SaqAI TTAA 5 cut(s) 318, 444, 579, 1229, 1319
SatI GCNGC 8 cut(s) 364, 728, 1089, 1096, 1164, 1173, 1197, 1465
Sau3AI GATC 8 cut(s) 115, 247, 368, 409, 456, 535, 775, 874
Sau96I GGNCC 1 cut(s) 902
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 907
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 5 cut(s) 367, 520, 580, 751, 1066
SinI GGWCC 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 3 cut(s) 490, 1127, 1393
SmoI CTYRAG 3 cut(s) 490, 1127, 1393
SpeI ACTAGT 1 cut(s) 416
SsiI CCGC 1 cut(s) 1166
SspMI CTAG 7 cut(s) 329, 417, 723, 954, 1092, 1176, 1476
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 1 cut(s) 905
StyI CCWWGG 3 cut(s) 222, 722, 853
TaaI ACNGT 3 cut(s) 286, 949, 1241
TaqI TCGA 1 cut(s) 345
TfiI GAWTC 4 cut(s) 403, 973, 1112, 1296
Tru1I TTAA 5 cut(s) 318, 444, 579, 1229, 1319
Tru9I TTAA 5 cut(s) 318, 444, 579, 1229, 1319
TscAI CASTG 5 cut(s) 18, 216, 592, 639, 1008
TseFI GTSAC 4 cut(s) 9, 35, 1257, 1441
TseI GCWGC 8 cut(s) 363, 727, 1088, 1095, 1163, 1172, 1196, 1464
Tsp45I GTSAC 4 cut(s) 9, 35, 1257, 1441
TspDTI ATGAA 4 cut(s) 138, 485, 1167, 1248
TspRI CASTG 5 cut(s) 18, 216, 592, 639, 1008
VpaK11BI GGWCC 1 cut(s) 902
XapI RAATTY 3 cut(s) 387, 817, 1497
XceI RCATGY 1 cut(s) 1510
XmaJI CCTAGG 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 859
XspI CTAG 7 cut(s) 329, 417, 723, 954, 1092, 1176, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.