Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 10 - 79 | 7.8e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 387 |
| AccB1I | GGYRCC | 2 cut(s) | 29, 387 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 92 |
| AccII | CGCG | 1 cut(s) | 38 |
| AciI | CCGC | 3 cut(s) | 38, 107, 391 |
| AdeI | CACNNNGTG | 1 cut(s) | 333 |
| AfaI | GTAC | 4 cut(s) | 75, 84, 389, 425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 92, 397, 400 |
| AgsI | TTSAA | 3 cut(s) | 158, 185, 238 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| Alw26I | GTCTC | 2 cut(s) | 342, 359 |
| AoxI | GGCC | 1 cut(s) | 60 |
| Asp718I | GGTACC | 1 cut(s) | 387 |
| AspLEI | GCGC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 2 cut(s) | 200, 421 |
| BaeGI | GKGCMC | 1 cut(s) | 316 |
| BanI | GGYRCC | 2 cut(s) | 29, 387 |
| BanII | GRGCYC | 1 cut(s) | 107 |
| BbsI | GAAGAC | 1 cut(s) | 146 |
| BccI | CCATC | 3 cut(s) | 49, 239, 406 |
| BceAI | ACGGC | 1 cut(s) | 225 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BclI | TGATCA | 1 cut(s) | 13 |
| BcoDI | GTCTC | 2 cut(s) | 342, 359 |
| BfaI | CTAG | 2 cut(s) | 302, 417 |
| BfmI | CTRYAG | 1 cut(s) | 432 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BmiI | GGNNCC | 3 cut(s) | 31, 61, 389 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 3 cut(s) | 181, 365, 387 |
| BpiI | GAAGAC | 1 cut(s) | 146 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BsaBI | GATNNNNATC | 1 cut(s) | 237 |
| BsaI | GGTCTC | 2 cut(s) | 342, 359 |
| BsaJI | CCNNGG | 2 cut(s) | 86, 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 240, 270 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 92, 397, 400 |
| Bse1I | ACTGG | 1 cut(s) | 81 |
| Bse8I | GATNNNNATC | 1 cut(s) | 237 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseDI | CCNNGG | 2 cut(s) | 86, 369 |
| BseGI | GGATG | 1 cut(s) | 380 |
| BseJI | GATNNNNATC | 1 cut(s) | 237 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 92, 397, 400 |
| BseMII | CTCAG | 3 cut(s) | 92, 209, 354 |
| BseNI | ACTGG | 1 cut(s) | 81 |
| BseRI | GAGGAG | 2 cut(s) | 416, 419 |
| BseSI | GKGCMC | 1 cut(s) | 316 |
| Bsh1236I | CGCG | 1 cut(s) | 38 |
| Bsh1285I | CGRYCG | 1 cut(s) | 398 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BshNI | GGYRCC | 2 cut(s) | 29, 387 |
| BsiEI | CGRYCG | 1 cut(s) | 398 |
| BslFI | GGGAC | 1 cut(s) | 373 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 92, 397, 400 |
| BsmAI | GTCTC | 2 cut(s) | 342, 359 |
| BsmFI | GGGAC | 1 cut(s) | 373 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bso31I | GGTCTC | 2 cut(s) | 342, 359 |
| Bsp1286I | GDGCHC | 2 cut(s) | 107, 316 |
| Bsp143I | GATC | 2 cut(s) | 13, 395 |
| BspACI | CCGC | 3 cut(s) | 38, 107, 391 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 3 cut(s) | 93, 208, 355 |
| BspFNI | CGCG | 1 cut(s) | 38 |
| BspLI | GGNNCC | 3 cut(s) | 31, 61, 389 |
| BspT107I | GGYRCC | 2 cut(s) | 29, 387 |
| BspTNI | GGTCTC | 2 cut(s) | 342, 359 |
| BsrI | ACTGG | 1 cut(s) | 81 |
| BssECI | CCNNGG | 2 cut(s) | 86, 369 |
| BssMI | GATC | 2 cut(s) | 13, 395 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 2 cut(s) | 64, 107 |
| BstDEI | CTNAG | 4 cut(s) | 101, 175, 195, 363 |
| BstEII | GGTNACC | 1 cut(s) | 95 |
| BstF5I | GGATG | 1 cut(s) | 380 |
| BstFNI | CGCG | 1 cut(s) | 38 |
| BstHHI | GCGC | 1 cut(s) | 38 |
| BstKTI | GATC | 2 cut(s) | 16, 398 |
| BstMAI | GTCTC | 2 cut(s) | 342, 359 |
| BstMBI | GATC | 2 cut(s) | 13, 395 |
| BstMCI | CGRYCG | 1 cut(s) | 398 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstPI | GGTNACC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstSFI | CTRYAG | 1 cut(s) | 432 |
| BstSLI | GKGCMC | 1 cut(s) | 316 |
| BstUI | CGCG | 1 cut(s) | 38 |
| BstV2I | GAAGAC | 1 cut(s) | 146 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsCI | GGATG | 1 cut(s) | 380 |
| Cac8I | GCNNGC | 2 cut(s) | 64, 107 |
| CfoI | GCGC | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| Csp6I | GTAC | 4 cut(s) | 74, 83, 388, 424 |
| CviJI | RGCY | 7 cut(s) | 62, 105, 128, 212, 322, 416, 437 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 105, 128, 212, 322, 416, 437 |
| CviQI | GTAC | 4 cut(s) | 74, 83, 388, 424 |
| DdeI | CTNAG | 4 cut(s) | 101, 175, 195, 363 |
| DpnI | GATC | 2 cut(s) | 15, 397 |
| DpnII | GATC | 2 cut(s) | 13, 395 |
| DraIII | CACNNNGTG | 1 cut(s) | 333 |
| Eco24I | GRGCYC | 1 cut(s) | 107 |
| Eco31I | GGTCTC | 2 cut(s) | 342, 359 |
| Eco91I | GGTNACC | 1 cut(s) | 95 |
| EcoO109I | RGGNCCY | 1 cut(s) | 60 |
| EcoO65I | GGTNACC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| EcoT22I | ATGCAT | 1 cut(s) | 380 |
| EcoT38I | GRGCYC | 1 cut(s) | 107 |
| FaiI | YATR | 2 cut(s) | 47, 434 |
| FaqI | GGGAC | 1 cut(s) | 373 |
| FauI | CCCGC | 1 cut(s) | 114 |
| FbaI | TGATCA | 1 cut(s) | 13 |
| FokI | GGATG | 1 cut(s) | 387 |
| FriOI | GRGCYC | 1 cut(s) | 107 |
| FspBI | CTAG | 2 cut(s) | 302, 417 |
| GlaI | GCGC | 1 cut(s) | 37 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 38 |
| Hin6I | GCGC | 1 cut(s) | 36 |
| HinP1I | GCGC | 1 cut(s) | 36 |
| HphI | GGTGA | 2 cut(s) | 200, 421 |
| Hpy166II | GTNNAC | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 3 cut(s) | 198, 383, 400 |
| Hpy188III | TCNNGA | 1 cut(s) | 242 |
| Hpy8I | GTNNAC | 1 cut(s) | 74 |
| HpyAV | CCTTC | 3 cut(s) | 179, 257, 262 |
| HpyCH4III | ACNGT | 1 cut(s) | 428 |
| HpyCH4V | TGCA | 2 cut(s) | 145, 378 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 175, 195, 363 |
| HspAI | GCGC | 1 cut(s) | 36 |
| KpnI | GGTACC | 1 cut(s) | 391 |
| Ksp22I | TGATCA | 1 cut(s) | 13 |
| Kzo9I | GATC | 2 cut(s) | 13, 395 |
| LweI | GCATC | 3 cut(s) | 181, 365, 387 |
| MaeI | CTAG | 2 cut(s) | 302, 417 |
| MaeIII | GTNAC | 3 cut(s) | 95, 296, 325 |
| MalI | GATC | 2 cut(s) | 15, 397 |
| MboI | GATC | 2 cut(s) | 13, 395 |
| MboII | GAAGA | 1 cut(s) | 146 |
| MfeI | CAATTG | 1 cut(s) | 288 |
| MhlI | GDGCHC | 2 cut(s) | 107, 316 |
| MluCI | AATT | 1 cut(s) | 288 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MnlI | CCTC | 8 cut(s) | 223, 253, 364, 377, 394, 397, 400, 413 |
| Mph1103I | ATGCAT | 1 cut(s) | 380 |
| MseI | TTAA | 2 cut(s) | 131, 216 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MunI | CAATTG | 1 cut(s) | 288 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| MvnI | CGCG | 1 cut(s) | 38 |
| NdeII | GATC | 2 cut(s) | 13, 395 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 61, 389 |
| NmuCI | GTSAC | 2 cut(s) | 296, 325 |
| NsiI | ATGCAT | 1 cut(s) | 380 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 92 |
| Ple19I | CGATCG | 1 cut(s) | 398 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspEI | GGTNACC | 1 cut(s) | 95 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 61, 389 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| PvuI | CGATCG | 1 cut(s) | 398 |
| RsaI | GTAC | 4 cut(s) | 75, 84, 389, 425 |
| RsaNI | GTAC | 4 cut(s) | 74, 83, 388, 424 |
| SaqAI | TTAA | 2 cut(s) | 131, 216 |
| Sau3AI | GATC | 2 cut(s) | 13, 395 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SduI | GDGCHC | 2 cut(s) | 107, 316 |
| SetI | ASST | 5 cut(s) | 102, 190, 287, 303, 411 |
| SfaNI | GCATC | 3 cut(s) | 181, 365, 387 |
| SfcI | CTRYAG | 1 cut(s) | 432 |
| Sse9I | AATT | 1 cut(s) | 288 |
| SsiI | CCGC | 3 cut(s) | 38, 107, 391 |
| SspMI | CTAG | 2 cut(s) | 302, 417 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 1 cut(s) | 428 |
| TaqII | GACCGA | 1 cut(s) | 383 |
| TasI | AATT | 1 cut(s) | 288 |
| TatI | WGTACW | 1 cut(s) | 73 |
| Tru1I | TTAA | 2 cut(s) | 131, 216 |
| Tru9I | TTAA | 2 cut(s) | 131, 216 |
| TseFI | GTSAC | 2 cut(s) | 296, 325 |
| Tsp45I | GTSAC | 2 cut(s) | 296, 325 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 92 |
| XspI | CTAG | 2 cut(s) | 302, 417 |
| Zsp2I | ATGCAT | 1 cut(s) | 380 |