Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 51 - 116 | 1.3e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 138 |
| Acc36I | ACCTGC | 1 cut(s) | 138 |
| AclI | AACGTT | 1 cut(s) | 35 |
| AclWI | GGATC | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 165 |
| AgsI | TTSAA | 3 cut(s) | 170, 254, 383 |
| AluBI | AGCT | 3 cut(s) | 6, 156, 268 |
| AluI | AGCT | 3 cut(s) | 6, 156, 268 |
| Alw21I | GWGCWC | 1 cut(s) | 366 |
| Alw26I | GTCTC | 1 cut(s) | 308 |
| AlwI | GGATC | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 327 |
| ApeKI | GCWGC | 2 cut(s) | 6, 113 |
| ApoI | RAATTY | 1 cut(s) | 165 |
| AspS9I | GGNCC | 1 cut(s) | 328 |
| AsuHPI | GGTGA | 1 cut(s) | 205 |
| BauI | CACGAG | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 366 |
| BbvI | GCAGC | 1 cut(s) | 100 |
| BccI | CCATC | 1 cut(s) | 342 |
| BcoDI | GTCTC | 1 cut(s) | 308 |
| BfaI | CTAG | 1 cut(s) | 403 |
| BfuAI | ACCTGC | 1 cut(s) | 138 |
| BisI | GCNGC | 2 cut(s) | 7, 114 |
| BlsI | GCNGC | 2 cut(s) | 8, 115 |
| BmgT120I | GGNCC | 1 cut(s) | 328 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BseGI | GGATG | 2 cut(s) | 166, 187 |
| BseXI | GCAGC | 1 cut(s) | 100 |
| BshFI | GGCC | 1 cut(s) | 329 |
| BsiHKAI | GWGCWC | 1 cut(s) | 366 |
| BsiSI | CCGG | 1 cut(s) | 17 |
| BsmAI | GTCTC | 1 cut(s) | 308 |
| BsmBI | CGTCTC | 1 cut(s) | 308 |
| BsnI | GGCC | 1 cut(s) | 329 |
| Bsp1286I | GDGCHC | 1 cut(s) | 366 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspANI | GGCC | 1 cut(s) | 329 |
| BspMI | ACCTGC | 1 cut(s) | 138 |
| BspPI | GGATC | 1 cut(s) | 20 |
| BspQI | GCTCTTC | 1 cut(s) | 378 |
| BssMI | GATC | 1 cut(s) | 25 |
| BssSI | CACGAG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 123 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| Bst6I | CTCTTC | 2 cut(s) | 304, 378 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstEII | GGTNACC | 1 cut(s) | 193 |
| BstF5I | GGATG | 2 cut(s) | 166, 187 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMAI | GTCTC | 1 cut(s) | 308 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 104, 113, 119, 153 |
| BstNSI | RCATGY | 1 cut(s) | 107 |
| BstPI | GGTNACC | 1 cut(s) | 193 |
| BstV1I | GCAGC | 1 cut(s) | 100 |
| BsuRI | GGCC | 1 cut(s) | 329 |
| BtsCI | GGATG | 2 cut(s) | 166, 187 |
| BveI | ACCTGC | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 1 cut(s) | 328 |
| CviAII | CATG | 1 cut(s) | 104 |
| CviJI | RGCY | 6 cut(s) | 6, 113, 156, 268, 329, 388 |
| CviKI_1 | RGCY | 6 cut(s) | 6, 113, 156, 268, 329, 388 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| Eam1104I | CTCTTC | 2 cut(s) | 304, 378 |
| EarI | CTCTTC | 2 cut(s) | 304, 378 |
| Eco91I | GGTNACC | 1 cut(s) | 193 |
| EcoO65I | GGTNACC | 1 cut(s) | 193 |
| Esp3I | CGTCTC | 1 cut(s) | 308 |
| FaeI | CATG | 1 cut(s) | 107 |
| FaiI | YATR | 7 cut(s) | 96, 105, 145, 226, 228, 240, 398 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 375 |
| FatI | CATG | 1 cut(s) | 103 |
| Fnu4HI | GCNGC | 2 cut(s) | 7, 114 |
| FokI | GGATG | 2 cut(s) | 173, 194 |
| Fsp4HI | GCNGC | 2 cut(s) | 7, 114 |
| FspBI | CTAG | 1 cut(s) | 403 |
| GluI | GCNGC | 2 cut(s) | 7, 114 |
| HaeIII | GGCC | 1 cut(s) | 329 |
| HapII | CCGG | 1 cut(s) | 17 |
| Hin1II | CATG | 1 cut(s) | 107 |
| HindIII | AAGCTT | 1 cut(s) | 266 |
| HpaII | CCGG | 1 cut(s) | 17 |
| HphI | GGTGA | 1 cut(s) | 205 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 2 cut(s) | 210, 284 |
| Hpy188III | TCNNGA | 1 cut(s) | 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| HpyAV | CCTTC | 3 cut(s) | 103, 170, 209 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 2 cut(s) | 35, 299 |
| HpyCH4V | TGCA | 6 cut(s) | 9, 98, 122, 147, 221, 274 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 104, 113, 119, 153 |
| HpySE526I | ACGT | 2 cut(s) | 35, 299 |
| Hsp92II | CATG | 1 cut(s) | 107 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LguI | GCTCTTC | 1 cut(s) | 378 |
| LmnI | GCTCC | 1 cut(s) | 153 |
| LpnPI | CCDG | 5 cut(s) | 30, 61, 69, 133, 381 |
| Lsp1109I | GCAGC | 1 cut(s) | 100 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 1 cut(s) | 403 |
| MaeII | ACGT | 2 cut(s) | 35, 299 |
| MaeIII | GTNAC | 2 cut(s) | 193, 295 |
| MalI | GATC | 1 cut(s) | 27 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 3 cut(s) | 266, 321, 395 |
| MhlI | GDGCHC | 1 cut(s) | 366 |
| MluCI | AATT | 3 cut(s) | 51, 165, 204 |
| MnlI | CCTC | 3 cut(s) | 208, 336, 399 |
| MseI | TTAA | 1 cut(s) | 57 |
| MspI | CCGG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 104, 113, 119, 153 |
| NdeII | GATC | 1 cut(s) | 25 |
| NlaIII | CATG | 1 cut(s) | 107 |
| NmuCI | GTSAC | 1 cut(s) | 193 |
| NspI | RCATGY | 1 cut(s) | 107 |
| PaqCI | CACCTGC | 1 cut(s) | 138 |
| PciSI | GCTCTTC | 1 cut(s) | 378 |
| PkrI | GCNGC | 2 cut(s) | 8, 115 |
| Psp1406I | AACGTT | 1 cut(s) | 35 |
| PspEI | GGTNACC | 1 cut(s) | 193 |
| PspPI | GGNCC | 1 cut(s) | 328 |
| SapI | GCTCTTC | 1 cut(s) | 378 |
| SaqAI | TTAA | 1 cut(s) | 57 |
| SatI | GCNGC | 2 cut(s) | 7, 114 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| Sau96I | GGNCC | 1 cut(s) | 328 |
| SduI | GDGCHC | 1 cut(s) | 366 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| Sse9I | AATT | 3 cut(s) | 51, 165, 204 |
| SspMI | CTAG | 1 cut(s) | 403 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 2 cut(s) | 38, 302 |
| TaqI | TCGA | 1 cut(s) | 307 |
| TasI | AATT | 3 cut(s) | 51, 165, 204 |
| Tru1I | TTAA | 1 cut(s) | 57 |
| Tru9I | TTAA | 1 cut(s) | 57 |
| TseFI | GTSAC | 1 cut(s) | 193 |
| TseI | GCWGC | 2 cut(s) | 6, 113 |
| Tsp45I | GTSAC | 1 cut(s) | 193 |
| TspDTI | ATGAA | 1 cut(s) | 177 |
| XapI | RAATTY | 1 cut(s) | 165 |
| XceI | RCATGY | 1 cut(s) | 107 |
| XspI | CTAG | 1 cut(s) | 403 |