ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 97 |
| AccB1I | GGYRCC | 1 cut(s) | 508 |
| AciI | CCGC | 2 cut(s) | 86, 494 |
| AcsI | RAATTY | 2 cut(s) | 135, 684 |
| AdeI | CACNNNGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 199, 453 |
| AgsI | TTSAA | 1 cut(s) | 605 |
| AhlI | ACTAGT | 1 cut(s) | 200 |
| AjnI | CCWGG | 1 cut(s) | 615 |
| AluBI | AGCT | 3 cut(s) | 406, 541, 659 |
| AluI | AGCT | 3 cut(s) | 406, 541, 659 |
| Alw26I | GTCTC | 3 cut(s) | 83, 338, 521 |
| AoxI | GGCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 1 cut(s) | 620 |
| ApoI | RAATTY | 2 cut(s) | 135, 684 |
| AspS9I | GGNCC | 1 cut(s) | 38 |
| AxyI | CCTNAGG | 1 cut(s) | 663 |
| BaeGI | GKGCMC | 1 cut(s) | 511 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 508 |
| BbvI | GCAGC | 1 cut(s) | 607 |
| BccI | CCATC | 1 cut(s) | 431 |
| BceAI | ACGGC | 3 cut(s) | 25, 374, 608 |
| BciT130I | CCWGG | 1 cut(s) | 617 |
| BcoDI | GTCTC | 3 cut(s) | 83, 338, 521 |
| BcuI | ACTAGT | 1 cut(s) | 200 |
| BfaI | CTAG | 2 cut(s) | 201, 513 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BisI | GCNGC | 1 cut(s) | 621 |
| BlsI | GCNGC | 1 cut(s) | 622 |
| Bme1390I | CCNGG | 1 cut(s) | 617 |
| BmgT120I | GGNCC | 1 cut(s) | 38 |
| BmiI | GGNNCC | 1 cut(s) | 510 |
| BmrFI | CCNGG | 1 cut(s) | 617 |
| BmsI | GCATC | 2 cut(s) | 241, 306 |
| BsaJI | CCNNGG | 5 cut(s) | 41, 54, 336, 594, 615 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 501, 531, 660, 690 |
| Bse118I | RCCGGY | 1 cut(s) | 253 |
| Bse1I | ACTGG | 2 cut(s) | 193, 370 |
| Bse21I | CCTNAGG | 1 cut(s) | 663 |
| BseBI | CCWGG | 1 cut(s) | 617 |
| BseDI | CCNNGG | 5 cut(s) | 41, 54, 336, 594, 615 |
| BseGI | GGATG | 2 cut(s) | 52, 442 |
| BseMII | CTCAG | 3 cut(s) | 193, 302, 654 |
| BseNI | ACTGG | 2 cut(s) | 193, 370 |
| BseSI | GKGCMC | 1 cut(s) | 511 |
| BseXI | GCAGC | 1 cut(s) | 607 |
| BsgI | GTGCAG | 1 cut(s) | 647 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BshNI | GGYRCC | 1 cut(s) | 508 |
| BsiSI | CCGG | 1 cut(s) | 254 |
| BslFI | GGGAC | 2 cut(s) | 482, 713 |
| BsmAI | GTCTC | 3 cut(s) | 83, 338, 521 |
| BsmFI | GGGAC | 2 cut(s) | 482, 713 |
| BsnI | GGCC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 1 cut(s) | 511 |
| Bsp143I | GATC | 1 cut(s) | 330 |
| Bsp19I | CCATGG | 1 cut(s) | 336 |
| BspACI | CCGC | 2 cut(s) | 86, 494 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 3 cut(s) | 192, 301, 655 |
| BspLI | GGNNCC | 1 cut(s) | 510 |
| BspT107I | GGYRCC | 1 cut(s) | 508 |
| BsrFI | RCCGGY | 1 cut(s) | 253 |
| BsrI | ACTGG | 2 cut(s) | 193, 370 |
| BssAI | RCCGGY | 1 cut(s) | 253 |
| BssECI | CCNNGG | 5 cut(s) | 41, 54, 336, 594, 615 |
| BssMI | GATC | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 3 cut(s) | 54, 336, 594 |
| Bst2UI | CCWGG | 1 cut(s) | 617 |
| Bst4CI | ACNGT | 2 cut(s) | 479, 748 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 5 cut(s) | 9, 179, 288, 574, 663 |
| BstDSI | CCRYGG | 2 cut(s) | 41, 336 |
| BstF5I | GGATG | 2 cut(s) | 52, 442 |
| BstKTI | GATC | 1 cut(s) | 333 |
| BstMAI | GTCTC | 3 cut(s) | 83, 338, 521 |
| BstMBI | GATC | 1 cut(s) | 330 |
| BstNI | CCWGG | 1 cut(s) | 617 |
| BstSCI | CCNGG | 1 cut(s) | 615 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstSLI | GKGCMC | 1 cut(s) | 511 |
| BstV1I | GCAGC | 1 cut(s) | 607 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 748 |
| Bsu36I | CCTNAGG | 1 cut(s) | 663 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BtgI | CCRYGG | 2 cut(s) | 41, 336 |
| BtsCI | GGATG | 2 cut(s) | 52, 442 |
| BtsIMutI | CAGTG | 3 cut(s) | 186, 363, 744 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| Cfr10I | RCCGGY | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 1 cut(s) | 38 |
| Csp6I | GTAC | 2 cut(s) | 198, 452 |
| CviAII | CATG | 3 cut(s) | 79, 155, 337 |
| CviJI | RGCY | 7 cut(s) | 40, 406, 541, 620, 659, 691, 752 |
| CviKI_1 | RGCY | 7 cut(s) | 40, 406, 541, 620, 659, 691, 752 |
| CviQI | GTAC | 2 cut(s) | 198, 452 |
| DdeI | CTNAG | 5 cut(s) | 9, 179, 288, 574, 663 |
| DpnI | GATC | 1 cut(s) | 332 |
| DpnII | GATC | 1 cut(s) | 330 |
| DraIII | CACNNNGTG | 1 cut(s) | 479 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 97 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 3 cut(s) | 54, 336, 594 |
| Eco81I | CCTNAGG | 1 cut(s) | 663 |
| EcoRII | CCWGG | 1 cut(s) | 615 |
| EcoT14I | CCWWGG | 3 cut(s) | 54, 336, 594 |
| ErhI | CCWWGG | 3 cut(s) | 54, 336, 594 |
| FaeI | CATG | 3 cut(s) | 82, 158, 340 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 300, 332, 546, 578 |
| FaqI | GGGAC | 2 cut(s) | 482, 713 |
| FatI | CATG | 3 cut(s) | 78, 154, 336 |
| Fnu4HI | GCNGC | 1 cut(s) | 621 |
| FokI | GGATG | 2 cut(s) | 59, 449 |
| Fsp4HI | GCNGC | 1 cut(s) | 621 |
| FspBI | CTAG | 2 cut(s) | 201, 513 |
| GluI | GCNGC | 1 cut(s) | 621 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| HapII | CCGG | 1 cut(s) | 254 |
| Hin1II | CATG | 3 cut(s) | 82, 158, 340 |
| HinfI | GANTC | 3 cut(s) | 470, 605, 611 |
| HpaII | CCGG | 1 cut(s) | 254 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 291, 459, 610 |
| Hpy188III | TCNNGA | 3 cut(s) | 301, 467, 662 |
| HpyCH4III | ACNGT | 2 cut(s) | 479, 748 |
| HpyCH4IV | ACGT | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 3 cut(s) | 433, 628, 764 |
| HpyF3I | CTNAG | 5 cut(s) | 9, 179, 288, 574, 663 |
| HpySE526I | ACGT | 1 cut(s) | 454 |
| Hsp92II | CATG | 3 cut(s) | 82, 158, 340 |
| KroI | GCCGGC | 1 cut(s) | 253 |
| KroNI | GCCGGC | 1 cut(s) | 255 |
| Kzo9I | GATC | 1 cut(s) | 330 |
| LmnI | GCTCC | 2 cut(s) | 365, 664 |
| Lsp1109I | GCAGC | 1 cut(s) | 607 |
| LweI | GCATC | 2 cut(s) | 241, 306 |
| MaeI | CTAG | 2 cut(s) | 201, 513 |
| MaeII | ACGT | 1 cut(s) | 454 |
| MaeIII | GTNAC | 2 cut(s) | 182, 676 |
| MalI | GATC | 1 cut(s) | 332 |
| MboI | GATC | 1 cut(s) | 330 |
| MboII | GAAGA | 1 cut(s) | 659 |
| MhlI | GDGCHC | 1 cut(s) | 511 |
| MluCI | AATT | 4 cut(s) | 135, 169, 221, 684 |
| MlyI | GAGTC | 2 cut(s) | 464, 605 |
| MnlI | CCTC | 4 cut(s) | 498, 637, 658, 721 |
| MroNI | GCCGGC | 1 cut(s) | 253 |
| MseI | TTAA | 1 cut(s) | 402 |
| MspI | CCGG | 1 cut(s) | 254 |
| MspR9I | CCNGG | 1 cut(s) | 617 |
| MvaI | CCWGG | 1 cut(s) | 617 |
| NaeI | GCCGGC | 1 cut(s) | 255 |
| NcoI | CCATGG | 1 cut(s) | 336 |
| NdeII | GATC | 1 cut(s) | 330 |
| NgoMIV | GCCGGC | 1 cut(s) | 253 |
| NlaIII | CATG | 3 cut(s) | 82, 158, 340 |
| NlaIV | GGNNCC | 1 cut(s) | 510 |
| NmuCI | GTSAC | 2 cut(s) | 182, 676 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 339, 451 |
| PdiI | GCCGGC | 1 cut(s) | 255 |
| PfeI | GAWTC | 1 cut(s) | 605 |
| PkrI | GCNGC | 1 cut(s) | 622 |
| PleI | GAGTC | 2 cut(s) | 464, 605 |
| PpsI | GAGTC | 2 cut(s) | 464, 605 |
| Psp6I | CCWGG | 1 cut(s) | 615 |
| PspGI | CCWGG | 1 cut(s) | 615 |
| PspN4I | GGNNCC | 1 cut(s) | 510 |
| PspPI | GGNCC | 1 cut(s) | 38 |
| RsaI | GTAC | 2 cut(s) | 199, 453 |
| RsaNI | GTAC | 2 cut(s) | 198, 452 |
| SaqAI | TTAA | 1 cut(s) | 402 |
| SatI | GCNGC | 1 cut(s) | 621 |
| Sau3AI | GATC | 1 cut(s) | 330 |
| Sau96I | GGNCC | 1 cut(s) | 38 |
| SchI | GAGTC | 2 cut(s) | 464, 605 |
| ScrFI | CCNGG | 1 cut(s) | 617 |
| SduI | GDGCHC | 1 cut(s) | 511 |
| SetI | ASST | 7 cut(s) | 15, 60, 408, 457, 514, 543, 661 |
| SfaNI | GCATC | 2 cut(s) | 241, 306 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SpeI | ACTAGT | 1 cut(s) | 200 |
| Sse9I | AATT | 4 cut(s) | 135, 169, 221, 684 |
| SsiI | CCGC | 2 cut(s) | 86, 494 |
| SspI | AATATT | 1 cut(s) | 653 |
| SspMI | CTAG | 2 cut(s) | 201, 513 |
| StyD4I | CCNGG | 1 cut(s) | 615 |
| StyI | CCWWGG | 3 cut(s) | 54, 336, 594 |
| TaaI | ACNGT | 2 cut(s) | 479, 748 |
| TaiI | ACGT | 1 cut(s) | 457 |
| TaqI | TCGA | 1 cut(s) | 126 |
| TasI | AATT | 4 cut(s) | 135, 169, 221, 684 |
| TfiI | GAWTC | 1 cut(s) | 605 |
| Tru1I | TTAA | 1 cut(s) | 402 |
| Tru9I | TTAA | 1 cut(s) | 402 |
| TscAI | CASTG | 3 cut(s) | 193, 370, 751 |
| TseFI | GTSAC | 2 cut(s) | 182, 676 |
| TseI | GCWGC | 1 cut(s) | 620 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 676 |
| TspDTI | ATGAA | 2 cut(s) | 67, 260 |
| TspGWI | ACGGA | 1 cut(s) | 201 |
| TspRI | CASTG | 3 cut(s) | 193, 370, 751 |
| XapI | RAATTY | 2 cut(s) | 135, 684 |
| XspI | CTAG | 2 cut(s) | 201, 513 |