Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 54 - 176 | 1.5e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 134, 417 |
| AclWI | GGATC | 2 cut(s) | 232, 245 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 2 cut(s) | 23, 323 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AfaI | GTAC | 1 cut(s) | 79 |
| AflIII | ACRYGT | 1 cut(s) | 74 |
| AjnI | CCWGG | 1 cut(s) | 524 |
| AluBI | AGCT | 3 cut(s) | 173, 298, 380 |
| AluI | AGCT | 3 cut(s) | 173, 298, 380 |
| Alw21I | GWGCWC | 2 cut(s) | 118, 300 |
| Alw26I | GTCTC | 2 cut(s) | 439, 455 |
| Alw44I | GTGCAC | 1 cut(s) | 114 |
| AlwI | GGATC | 2 cut(s) | 232, 245 |
| AoxI | GGCC | 1 cut(s) | 99 |
| ApaLI | GTGCAC | 1 cut(s) | 114 |
| ApoI | RAATTY | 2 cut(s) | 23, 323 |
| AspA2I | CCTAGG | 1 cut(s) | 455 |
| AvrII | CCTAGG | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 2 cut(s) | 118, 125 |
| BamHI | GGATCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 2 cut(s) | 118, 300 |
| BccI | CCATC | 3 cut(s) | 136, 161, 416 |
| BceAI | ACGGC | 1 cut(s) | 192 |
| BciT130I | CCWGG | 1 cut(s) | 526 |
| BcoDI | GTCTC | 2 cut(s) | 439, 455 |
| BfaI | CTAG | 4 cut(s) | 332, 374, 389, 456 |
| BlnI | CCTAGG | 1 cut(s) | 455 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| Bme1390I | CCNGG | 1 cut(s) | 526 |
| BmiI | GGNNCC | 1 cut(s) | 239 |
| BmrFI | CCNGG | 1 cut(s) | 526 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| BsaAI | YACGTR | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 2 cut(s) | 96, 455 |
| BseBI | CCWGG | 1 cut(s) | 526 |
| BseDI | CCNNGG | 2 cut(s) | 96, 455 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMII | CTCAG | 2 cut(s) | 285, 429 |
| BseRI | GAGGAG | 1 cut(s) | 219 |
| BseSI | GKGCMC | 2 cut(s) | 118, 125 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 2 cut(s) | 118, 300 |
| BsmAI | GTCTC | 2 cut(s) | 439, 455 |
| BsnI | GGCC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 3 cut(s) | 118, 125, 300 |
| Bsp143I | GATC | 3 cut(s) | 82, 237, 354 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| BspACI | CCGC | 2 cut(s) | 134, 417 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 2 cut(s) | 286, 430 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 1 cut(s) | 239 |
| BspPI | GGATC | 2 cut(s) | 232, 245 |
| BssECI | CCNNGG | 2 cut(s) | 96, 455 |
| BssMI | GATC | 3 cut(s) | 82, 237, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 455 |
| Bst2UI | CCWGG | 1 cut(s) | 526 |
| Bst4CI | ACNGT | 1 cut(s) | 410 |
| Bst6I | CTCTTC | 1 cut(s) | 396 |
| BstBAI | YACGTR | 1 cut(s) | 77 |
| BstDEI | CTNAG | 3 cut(s) | 258, 294, 438 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstKTI | GATC | 3 cut(s) | 85, 240, 357 |
| BstMAI | GTCTC | 2 cut(s) | 439, 455 |
| BstMBI | GATC | 3 cut(s) | 82, 237, 354 |
| BstNI | CCWGG | 1 cut(s) | 526 |
| BstNSI | RCATGY | 1 cut(s) | 273 |
| BstSCI | CCNGG | 1 cut(s) | 524 |
| BstSLI | GKGCMC | 2 cut(s) | 118, 125 |
| BstX2I | RGATCY | 1 cut(s) | 237 |
| BstYI | RGATCY | 1 cut(s) | 237 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| CciI | TCATGA | 1 cut(s) | 229 |
| Csp6I | GTAC | 1 cut(s) | 78 |
| CviAII | CATG | 3 cut(s) | 230, 270, 494 |
| CviJI | RGCY | 8 cut(s) | 40, 67, 95, 101, 173, 298, 380, 512 |
| CviKI_1 | RGCY | 8 cut(s) | 40, 67, 95, 101, 173, 298, 380, 512 |
| CviQI | GTAC | 1 cut(s) | 78 |
| DdeI | CTNAG | 3 cut(s) | 258, 294, 438 |
| DpnI | GATC | 3 cut(s) | 84, 239, 356 |
| DpnII | GATC | 3 cut(s) | 82, 237, 354 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 1 cut(s) | 396 |
| EarI | CTCTTC | 1 cut(s) | 396 |
| Ecl136II | GAGCTC | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 1 cut(s) | 455 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco32I | GATATC | 2 cut(s) | 60, 277 |
| Eco53kI | GAGCTC | 1 cut(s) | 298 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| EcoICRI | GAGCTC | 1 cut(s) | 298 |
| EcoRII | CCWGG | 1 cut(s) | 524 |
| EcoRV | GATATC | 2 cut(s) | 60, 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 455 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| ErhI | CCWWGG | 1 cut(s) | 455 |
| FaeI | CATG | 3 cut(s) | 233, 273, 497 |
| FaiI | YATR | 4 cut(s) | 92, 231, 271, 495 |
| FatI | CATG | 3 cut(s) | 229, 269, 493 |
| FokI | GGATG | 1 cut(s) | 179 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| FspBI | CTAG | 4 cut(s) | 332, 374, 389, 456 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| Hin1II | CATG | 3 cut(s) | 233, 273, 497 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HinfI | GANTC | 1 cut(s) | 448 |
| HpaI | GTTAAC | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 394 |
| Hpy188I | TCNGA | 3 cut(s) | 354, 439, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 230, 332, 374, 538 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 394 |
| HpyCH4III | ACNGT | 1 cut(s) | 410 |
| HpyCH4IV | ACGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 2 cut(s) | 116, 501 |
| HpyF3I | CTNAG | 3 cut(s) | 258, 294, 438 |
| HpySE526I | ACGT | 1 cut(s) | 76 |
| Hsp92II | CATG | 3 cut(s) | 233, 273, 497 |
| KspAI | GTTAAC | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 82, 237, 354 |
| LmnI | GCTCC | 3 cut(s) | 15, 170, 248 |
| LpnPI | CCDG | 5 cut(s) | 104, 300, 511, 523, 538 |
| MaeI | CTAG | 4 cut(s) | 332, 374, 389, 456 |
| MaeII | ACGT | 1 cut(s) | 76 |
| MaeIII | GTNAC | 2 cut(s) | 191, 410 |
| MalI | GATC | 3 cut(s) | 84, 239, 356 |
| MboI | GATC | 3 cut(s) | 82, 237, 354 |
| MboII | GAAGA | 1 cut(s) | 413 |
| MflI | RGATCY | 1 cut(s) | 237 |
| MhlI | GDGCHC | 3 cut(s) | 118, 125, 300 |
| MluCI | AATT | 2 cut(s) | 23, 323 |
| MlyI | GAGTC | 1 cut(s) | 457 |
| MnlI | CCTC | 8 cut(s) | 48, 78, 106, 197, 226, 259, 360, 397 |
| MseI | TTAA | 4 cut(s) | 159, 393, 444, 465 |
| MspA1I | CMGCKG | 1 cut(s) | 419 |
| MspR9I | CCNGG | 1 cut(s) | 526 |
| MvaI | CCWGG | 1 cut(s) | 526 |
| NdeII | GATC | 3 cut(s) | 82, 237, 354 |
| NlaIII | CATG | 3 cut(s) | 233, 273, 497 |
| NlaIV | GGNNCC | 1 cut(s) | 239 |
| NmeAIII | GCCGAG | 1 cut(s) | 77 |
| NspI | RCATGY | 1 cut(s) | 273 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 82 |
| PleI | GAGTC | 1 cut(s) | 456 |
| PpsI | GAGTC | 1 cut(s) | 456 |
| Ppu21I | YACGTR | 1 cut(s) | 77 |
| Psp124BI | GAGCTC | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 524 |
| PspGI | CCWGG | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 1 cut(s) | 239 |
| PsuI | RGATCY | 1 cut(s) | 237 |
| RsaI | GTAC | 1 cut(s) | 79 |
| RsaNI | GTAC | 1 cut(s) | 78 |
| SacI | GAGCTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 4 cut(s) | 159, 393, 444, 465 |
| Sau3AI | GATC | 3 cut(s) | 82, 237, 354 |
| SchI | GAGTC | 1 cut(s) | 457 |
| ScrFI | CCNGG | 1 cut(s) | 526 |
| SduI | GDGCHC | 3 cut(s) | 118, 125, 300 |
| SetI | ASST | 7 cut(s) | 79, 175, 300, 319, 382, 510, 530 |
| Sse9I | AATT | 2 cut(s) | 23, 323 |
| SsiI | CCGC | 2 cut(s) | 134, 417 |
| SspI | AATATT | 1 cut(s) | 469 |
| SspMI | CTAG | 4 cut(s) | 332, 374, 389, 456 |
| SstI | GAGCTC | 1 cut(s) | 300 |
| StyD4I | CCNGG | 1 cut(s) | 524 |
| StyI | CCWWGG | 1 cut(s) | 455 |
| TaaI | ACNGT | 1 cut(s) | 410 |
| TaiI | ACGT | 1 cut(s) | 79 |
| TaqI | TCGA | 1 cut(s) | 518 |
| TaqII | GACCGA | 1 cut(s) | 271 |
| TasI | AATT | 2 cut(s) | 23, 323 |
| Tru1I | TTAA | 4 cut(s) | 159, 393, 444, 465 |
| Tru9I | TTAA | 4 cut(s) | 159, 393, 444, 465 |
| TspDTI | ATGAA | 1 cut(s) | 520 |
| VneI | GTGCAC | 1 cut(s) | 114 |
| XapI | RAATTY | 2 cut(s) | 23, 323 |
| XbaI | TCTAGA | 2 cut(s) | 331, 373 |
| XceI | RCATGY | 1 cut(s) | 273 |
| XmaJI | CCTAGG | 1 cut(s) | 455 |
| XspI | CTAG | 4 cut(s) | 332, 374, 389, 456 |