Rorug01G0184500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000072
Physical Location & Seq
Reverse (-)
25570218 .. 25573279
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0184500.1

Sequence Viewer

Length: 1761 bp
ATGGCAGAAGATTATGTATACTTACAAGGTGGGAGAGTTGGAGGACCCATTGCAGAAGATGATTTATACACCAAAGATGGGACAGTGGATTACAGAGGGAACCCGGCTAACAAAAATGTCACAGGAACCTGGAAGGCATGCCCTTTTATTCTAGGGAATGAATTGTGTGAAAGATTGGCATTCTATGGGCTGAGTGCAAATCTGGTGCTTTATTTCAAGAATCATCTACACCAGAGCAGTGCTGCTGCAGCTAAAAGTATCTCAAATTGGACTGGAACATGCTACCTCACCCCTTTGATTGGTGCATTTCTGGCTGATGCTTATTTGGGAAGATACAAGACCATTGCCTCTTTCACAATCATCTATGTCATTGGGATGGCTCTCTTGACAATGTCCACATCAGTCCCAGGCCTGAAACCTACCTGTGTTTCGAAAGATGACTGCTATGCAACTGCTGGACAATCTGCAACCTGCTTTGTGGCATTGTACCTTGTAGCTTTGGCAACTGGTGGGATTAAGCCTTGTGTCTCAGCTTATGGAGCAGATCAGTTTGACGAGGATGATGAGATTGAAAAGAAGCACAAGAGTTCTTTCTTCAACTGGTTCTATTTTGTCATCAACATCGGTGCTTTGATTGCTAGTTCATTGCTGGTATGGATACAAACCAACATTGGTTGGGAATGGGGTTTCGGCATACCAGCAGTTGCCATGGCAATTGCTGTAGTGAGTTTCTTTTCGGGTACTAGGATATACCGGAACCAGAACCCAGGAGGTAGCCCGATAACCCGAATAGTTCAGGTGGTGGTGGCATCTGTGAGAAAATACAAGGTGAAAGTACCTGAAGACAAGTCCCTTTTCTATGAGACCGCAGATGCAGAGTCTGCTATCAAAGGAAGCCGCAAGCTTGAACACACAAATGAGTTTAGGTTTTTTGACAAAGCAGTTGTGGAGCTACCAACAGACAACATAAAGGGCTTCATAGACCCGTGGAGACTTTGTACAGTTACCCAAGTAGAGGAGCTAAAATCAATCATAAGGTTGCTTCCTGTTTGGGCCACTGGTATTATCTTTGCTGCGGTCTTCAGTCAAATGAGCAACTTCTTTGTGTTGCAAGGCAGCCTTATGGATCTTCATGTTGGCTCCTCTAGCTTTGAGATTCCAGCAGCCTCCCTGTCTGTATTCGATACCCTTAGTGTTATTGTTTGGATCCCAATCTATGATCGACTCATTGTCCCATTTACTAGAAAATTCACAGGTCACAAGAATGGCATAACTTCACTCCAGAGGATGGGAATTGGTCTCTTCATTTCCATATTCTCCATGATATGTGCTGCAATTCTAGAATATATCAGACTCCAAAAGGTTCGAGAGCACAACTATTATGACCTTGACCATATGCCCATGTCTGTTTTTTGGCAAGTGCCTCAGTATTTCCTAATAGGTGCTGCAGAAGTCTTCACAGTCATTGGACAGGTTGACTTTTTCTACGATCAAGCACCTGATGCCATGAGAAGCTTGTCTTCTGCTCTCGCACTCTCCACCGTTGCATTAGGAAACTACTTCAACTCTCTGCTTGTCACCATTGTTTCCAACGTGACGACAAAGAACAATAAGCCGGGATGGATTCCGGACAATTTGAATTACGGTCACCTCGATTATTTCTTTTATTTTCTCGCAGTGCTGAGTGTTCTGAACCTAGGAGCTTTTATGTTAATTTCCAAGTGGTACACATATAAAAAGACTCTGGGAACTCTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

586

Amino Acids

65.21

Weight (kDa)

7.53

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 56 - 518 9.6e-16 Major Facilitator Superfamily
PTR2 PF00854 112 - 542 1.4e-120 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 1288
AccI GTMKAC 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 1627
AciI CCGC 3 cut(s) 867, 898, 1076
AclWI GGATC 3 cut(s) 1134, 1201, 1214
AcsI RAATTY 1 cut(s) 1247
AcuI CTGAAG 2 cut(s) 861, 1066
AfaI GTAC 5 cut(s) 488, 742, 837, 1000, 1727
AfiI CCNNNNNNNGG 4 cut(s) 78, 299, 1015, 1288
AgsI TTSAA 6 cut(s) 217, 572, 598, 908, 1564, 1639
AhdI GACNNNNNGTC 1 cut(s) 1229
AjnI CCWGG 3 cut(s) 128, 406, 766
AluBI AGCT 9 cut(s) 251, 497, 533, 904, 952, 1021, 1149, 1515, 1703
AluI AGCT 9 cut(s) 251, 497, 533, 904, 952, 1021, 1149, 1515, 1703
Alw21I GWGCWC 1 cut(s) 1374
Alw26I GTCTC 4 cut(s) 532, 857, 985, 1304
AlwI GGATC 3 cut(s) 1134, 1201, 1214
AlwNI CAGNNNCTG 1 cut(s) 881
Aor13HI TCCGGA 1 cut(s) 1627
AoxI GGCC 2 cut(s) 409, 1053
ApeKI GCWGC 8 cut(s) 242, 245, 248, 1073, 1116, 1163, 1331, 1445
ApoI RAATTY 1 cut(s) 1247
AspA2I CCTAGG 1 cut(s) 1696
AspS9I GGNCC 2 cut(s) 44, 1053
AsuC2I CCSGG 2 cut(s) 104, 1617
AsuHPI GGTGA 4 cut(s) 280, 841, 1570, 1640
AsuII TTCGAA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 1696
BamHI GGATCC 1 cut(s) 1206
BbsI GAAGAC 4 cut(s) 849, 1072, 1447, 1512
Bbv12I GWGCWC 1 cut(s) 1374
BbvI GCAGC 8 cut(s) 229, 232, 260, 1060, 1128, 1175, 1318, 1432
BccI CCATC 4 cut(s) 71, 370, 1282, 1614
BciT130I CCWGG 3 cut(s) 130, 408, 768
BciVI GTATCC 1 cut(s) 651
BcnI CCSGG 2 cut(s) 104, 1617
BcoDI GTCTC 4 cut(s) 532, 857, 985, 1304
BfaI CTAG 7 cut(s) 152, 639, 744, 1146, 1242, 1340, 1697
BfmI CTRYAG 3 cut(s) 246, 720, 1446
BfuAI ACCTGC 1 cut(s) 479
BfuI GTATCC 1 cut(s) 651
BisI GCNGC 9 cut(s) 243, 246, 249, 898, 1074, 1117, 1164, 1332, 1446
BlnI CCTAGG 1 cut(s) 1696
BlsI GCNGC 9 cut(s) 244, 247, 250, 899, 1075, 1118, 1165, 1333, 1447
Bme1390I CCNGG 5 cut(s) 104, 130, 408, 768, 1617
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 1229
BmgT120I GGNCC 2 cut(s) 44, 1053
BmiI GGNNCC 6 cut(s) 46, 101, 127, 758, 1141, 1208
BmrFI CCNGG 5 cut(s) 104, 130, 408, 768, 1617
BmsI GCATC 4 cut(s) 307, 818, 862, 1492
BpiI GAAGAC 4 cut(s) 849, 1072, 1447, 1512
BpmI CTGGAG 1 cut(s) 1265
Bpu14I TTCGAA 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 104, 1617
BsaBI GATNNNNATC 1 cut(s) 1211
BsaI GGTCTC 2 cut(s) 857, 1304
BsaJI CCNNGG 5 cut(s) 406, 708, 766, 986, 1696
BsaWI WCCGGW 2 cut(s) 753, 1627
BsaXI ACNNNNNCTCC 2 cut(s) 982, 1012
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 299, 1015, 1288
Bse1I ACTGG 4 cut(s) 277, 511, 605, 1063
Bse3DI GCAATG 3 cut(s) 48, 342, 644
Bse8I GATNNNNATC 1 cut(s) 1211
BseAI TCCGGA 1 cut(s) 1627
BseBI CCWGG 3 cut(s) 130, 408, 768
BseDI CCNNGG 5 cut(s) 406, 708, 766, 986, 1696
BseGI GGATG 4 cut(s) 381, 565, 1293, 1625
BseJI GATNNNNATC 1 cut(s) 1211
BseLI CCNNNNNNNGG 4 cut(s) 78, 299, 1015, 1288
BseMI GCAATG 3 cut(s) 48, 342, 644
BseMII CTCAG 4 cut(s) 182, 543, 1439, 1673
BseNI ACTGG 4 cut(s) 277, 511, 605, 1063
BseRI GAGGAG 2 cut(s) 1031, 1132
BseXI GCAGC 8 cut(s) 229, 232, 260, 1060, 1128, 1175, 1318, 1432
BshFI GGCC 2 cut(s) 411, 1055
BsiHKAI GWGCWC 1 cut(s) 1374
BsiSI CCGG 4 cut(s) 104, 754, 1616, 1628
BslFI GGGAC 4 cut(s) 94, 389, 835, 1217
BslI CCNNNNNNNGG 4 cut(s) 78, 299, 1015, 1288
BsmAI GTCTC 4 cut(s) 532, 857, 985, 1304
BsmFI GGGAC 4 cut(s) 94, 389, 835, 1217
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 411, 1055
Bso31I GGTCTC 2 cut(s) 857, 1304
Bsp119I TTCGAA 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 1374
Bsp13I TCCGGA 1 cut(s) 1627
Bsp1407I TGTACA 1 cut(s) 998
Bsp143I GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 3 cut(s) 867, 898, 1076
BspANI GGCC 2 cut(s) 411, 1055
BspCNI CTCAG 4 cut(s) 183, 542, 1438, 1674
BspEI TCCGGA 1 cut(s) 1627
BspLI GGNNCC 6 cut(s) 46, 101, 127, 758, 1141, 1208
BspMAI CTGCAG 2 cut(s) 250, 1450
BspMI ACCTGC 1 cut(s) 479
BspPI GGATC 3 cut(s) 1134, 1201, 1214
BspT104I TTCGAA 1 cut(s) 431
BspTNI GGTCTC 2 cut(s) 857, 1304
BsrDI GCAATG 3 cut(s) 48, 342, 644
BsrGI TGTACA 1 cut(s) 998
BsrI ACTGG 4 cut(s) 277, 511, 605, 1063
BssECI CCNNGG 5 cut(s) 406, 708, 766, 986, 1696
BssMI GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
BssNAI GTATAC 1 cut(s) 19
BssT1I CCWWGG 2 cut(s) 708, 1696
Bst1107I GTATAC 1 cut(s) 19
Bst2UI CCWGG 3 cut(s) 130, 408, 768
Bst4CI ACNGT 5 cut(s) 85, 1003, 1462, 1543, 1646
Bst6I CTCTTC 1 cut(s) 1307
BstAPI GCANNNNNTGC 2 cut(s) 881, 1502
BstAUI TGTACA 1 cut(s) 998
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 139, 902
BstDEI CTNAG 5 cut(s) 191, 529, 1190, 1425, 1682
BstDSI CCRYGG 2 cut(s) 708, 986
BstEII GGTNACC 1 cut(s) 1646
BstF5I GGATG 4 cut(s) 381, 565, 1293, 1625
BstKTI GATC 5 cut(s) 547, 1129, 1209, 1222, 1492
BstMAI GTCTC 4 cut(s) 532, 857, 985, 1304
BstMBI GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
BstMWI GCNNNNNNNGC 7 cut(s) 248, 311, 539, 635, 881, 1146, 1502
BstNI CCWGG 3 cut(s) 130, 408, 768
BstNSI RCATGY 2 cut(s) 141, 282
BstPI GGTNACC 1 cut(s) 1646
BstSCI CCNGG 5 cut(s) 102, 128, 406, 766, 1615
BstSFI CTRYAG 3 cut(s) 246, 720, 1446
BstV1I GCAGC 8 cut(s) 229, 232, 260, 1060, 1128, 1175, 1318, 1432
BstV2I GAAGAC 4 cut(s) 849, 1072, 1447, 1512
BstX2I RGATCY 2 cut(s) 1126, 1206
BstYI RGATCY 2 cut(s) 1126, 1206
BstZ17I GTATAC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 651
BsuRI GGCC 2 cut(s) 411, 1055
BtgI CCRYGG 2 cut(s) 708, 986
BtsCI GGATG 4 cut(s) 381, 565, 1293, 1625
BtsI GCAGTG 2 cut(s) 244, 1683
BtsIMutI CAGTG 4 cut(s) 90, 244, 1056, 1683
BveI ACCTGC 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 139, 902
CaiI CAGNNNCTG 1 cut(s) 881
Cfr13I GGNCC 2 cut(s) 44, 1053
Csp6I GTAC 5 cut(s) 487, 741, 836, 999, 1726
CviAII CATG 7 cut(s) 138, 279, 709, 1133, 1321, 1402, 1507
CviQI GTAC 5 cut(s) 487, 741, 836, 999, 1726
DdeI CTNAG 5 cut(s) 191, 529, 1190, 1425, 1682
DpnI GATC 5 cut(s) 546, 1128, 1208, 1221, 1491
DpnII GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
DriI GACNNNNNGTC 1 cut(s) 1229
Eam1104I CTCTTC 1 cut(s) 1307
Eam1105I GACNNNNNGTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 1307
Eco130I CCWWGG 2 cut(s) 708, 1696
Eco147I AGGCCT 1 cut(s) 411
Eco31I GGTCTC 2 cut(s) 857, 1304
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 861, 1066
Eco91I GGTNACC 1 cut(s) 1646
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 1646
EcoRII CCWGG 3 cut(s) 128, 406, 766
EcoT14I CCWWGG 2 cut(s) 708, 1696
ErhI CCWWGG 2 cut(s) 708, 1696
FaeI CATG 7 cut(s) 141, 282, 712, 1136, 1324, 1405, 1510
FalI AAGNNNNNCTT 4 cut(s) 1104, 1136, 1504, 1536
FaqI GGGAC 4 cut(s) 94, 389, 835, 1217
FatI CATG 7 cut(s) 137, 278, 708, 1132, 1320, 1401, 1506
FauNDI CATATG 1 cut(s) 1395
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 9 cut(s) 243, 246, 249, 898, 1074, 1117, 1164, 1332, 1446
FokI GGATG 4 cut(s) 388, 572, 1300, 1632
Fsp4HI GCNGC 9 cut(s) 243, 246, 249, 898, 1074, 1117, 1164, 1332, 1446
FspBI CTAG 7 cut(s) 152, 639, 744, 1146, 1242, 1340, 1697
GluI GCNGC 9 cut(s) 243, 246, 249, 898, 1074, 1117, 1164, 1332, 1446
GsuI CTGGAG 1 cut(s) 1265
HaeIII GGCC 2 cut(s) 411, 1055
HapII CCGG 4 cut(s) 104, 754, 1616, 1628
Hin1II CATG 7 cut(s) 141, 282, 712, 1136, 1324, 1405, 1510
HincII GTYRAC 1 cut(s) 1477
HindII GTYRAC 1 cut(s) 1477
HindIII AAGCTT 2 cut(s) 902, 1513
HinfI GANTC 7 cut(s) 220, 878, 1156, 1224, 1353, 1624, 1741
HpaII CCGG 4 cut(s) 104, 754, 1616, 1628
HphI GGTGA 4 cut(s) 280, 841, 1570, 1640
Hpy166II GTNNAC 4 cut(s) 19, 396, 1477, 1728
Hpy188I TCNGA 2 cut(s) 1352, 1692
Hpy188III TCNNGA 6 cut(s) 217, 385, 1282, 1340, 1367, 1628
Hpy8I GTNNAC 4 cut(s) 19, 396, 1477, 1728
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 5 cut(s) 85, 1003, 1462, 1543, 1646
HpyCH4IV ACGT 1 cut(s) 1593
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 311, 539, 635, 881, 1146, 1502
HpyF3I CTNAG 5 cut(s) 191, 529, 1190, 1425, 1682
HpySE526I ACGT 1 cut(s) 1593
Hsp92II CATG 7 cut(s) 141, 282, 712, 1136, 1324, 1405, 1510
Kpn2I TCCGGA 1 cut(s) 1627
Kzo9I GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
LmnI GCTCC 5 cut(s) 539, 949, 1018, 1145, 1700
Lsp1109I GCAGC 8 cut(s) 229, 232, 260, 1060, 1128, 1175, 1318, 1432
LweI GCATC 4 cut(s) 307, 818, 862, 1492
MaeI CTAG 7 cut(s) 152, 639, 744, 1146, 1242, 1340, 1697
MaeII ACGT 1 cut(s) 1593
MaeIII GTNAC 6 cut(s) 118, 1003, 1256, 1576, 1594, 1646
MalI GATC 5 cut(s) 546, 1128, 1208, 1221, 1491
MboI GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 2 cut(s) 1126, 1206
MhlI GDGCHC 1 cut(s) 1374
MluCI AATT 9 cut(s) 161, 265, 714, 1247, 1293, 1335, 1633, 1639, 1713
MlyI GAGTC 4 cut(s) 887, 1218, 1347, 1735
MmeI TCCRAC 2 cut(s) 19, 1614
MroI TCCGGA 1 cut(s) 1627
MseI TTAA 2 cut(s) 516, 1712
MslI CAYNNNNRTG 3 cut(s) 374, 915, 1263
MspI CCGG 4 cut(s) 104, 754, 1616, 1628
MspR9I CCNGG 5 cut(s) 104, 130, 408, 768, 1617
MunI CAATTG 1 cut(s) 714
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 3 cut(s) 130, 408, 768
MwoI GCNNNNNNNGC 7 cut(s) 248, 311, 539, 635, 881, 1146, 1502
NciI CCSGG 2 cut(s) 104, 1617
NcoI CCATGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 1395
NdeII GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
NlaIII CATG 7 cut(s) 141, 282, 712, 1136, 1324, 1405, 1510
NlaIV GGNNCC 6 cut(s) 46, 101, 127, 758, 1141, 1208
NmuCI GTSAC 5 cut(s) 118, 1256, 1576, 1594, 1646
NspI RCATGY 2 cut(s) 141, 282
NspV TTCGAA 1 cut(s) 431
PaeI GCATGC 1 cut(s) 141
PceI AGGCCT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 1650
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 220, 1156, 1624
PflFI GACNNNGTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 1288
PkrI GCNGC 9 cut(s) 244, 247, 250, 899, 1075, 1118, 1165, 1333, 1447
PleI GAGTC 4 cut(s) 886, 1218, 1347, 1735
PpsI GAGTC 4 cut(s) 886, 1218, 1347, 1735
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 128, 406, 766
PspEI GGTNACC 1 cut(s) 1646
PspGI CCWGG 3 cut(s) 128, 406, 766
PspN4I GGNNCC 6 cut(s) 46, 101, 127, 758, 1141, 1208
PspPI GGNCC 2 cut(s) 44, 1053
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 2 cut(s) 250, 1450
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 2 cut(s) 1126, 1206
PsyI GACNNNGTC 1 cut(s) 391
RsaI GTAC 5 cut(s) 488, 742, 837, 1000, 1727
RsaNI GTAC 5 cut(s) 487, 741, 836, 999, 1726
RseI CAYNNNNRTG 3 cut(s) 374, 915, 1263
SaqAI TTAA 2 cut(s) 516, 1712
SatI GCNGC 9 cut(s) 243, 246, 249, 898, 1074, 1117, 1164, 1332, 1446
Sau3AI GATC 5 cut(s) 544, 1126, 1206, 1219, 1489
Sau96I GGNCC 2 cut(s) 44, 1053
SchI GAGTC 4 cut(s) 887, 1218, 1347, 1735
ScrFI CCNGG 5 cut(s) 104, 130, 408, 768, 1617
SduI GDGCHC 1 cut(s) 1374
SfaNI GCATC 4 cut(s) 307, 818, 862, 1492
SfcI CTRYAG 3 cut(s) 246, 720, 1446
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 374, 915, 1263
SphI GCATGC 1 cut(s) 141
Sse9I AATT 9 cut(s) 161, 265, 714, 1247, 1293, 1335, 1633, 1639, 1713
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 3 cut(s) 867, 898, 1076
SspMI CTAG 7 cut(s) 152, 639, 744, 1146, 1242, 1340, 1697
StuI AGGCCT 1 cut(s) 411
StyD4I CCNGG 5 cut(s) 102, 128, 406, 766, 1615
StyI CCWWGG 2 cut(s) 708, 1696
TaaI ACNGT 5 cut(s) 85, 1003, 1462, 1543, 1646
TaiI ACGT 1 cut(s) 1596
TaqI TCGA 5 cut(s) 431, 1182, 1222, 1366, 1653
TasI AATT 9 cut(s) 161, 265, 714, 1247, 1293, 1335, 1633, 1639, 1713
TatI WGTACW 1 cut(s) 998
TauI GCSGC 1 cut(s) 900
TfiI GAWTC 3 cut(s) 220, 1156, 1624
Tru1I TTAA 2 cut(s) 516, 1712
Tru9I TTAA 2 cut(s) 516, 1712
TscAI CASTG 4 cut(s) 90, 244, 1063, 1683
TseFI GTSAC 5 cut(s) 118, 1256, 1576, 1594, 1646
TseI GCWGC 8 cut(s) 242, 245, 248, 1073, 1116, 1163, 1331, 1445
Tsp45I GTSAC 5 cut(s) 118, 1256, 1576, 1594, 1646
TspDTI ATGAA 5 cut(s) 174, 633, 967, 1121, 1294
TspRI CASTG 4 cut(s) 90, 244, 1063, 1683
Tth111I GACNNNGTC 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 1288
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 1247
XbaI TCTAGA 1 cut(s) 1339
XceI RCATGY 2 cut(s) 141, 282
XmaJI CCTAGG 1 cut(s) 1696
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 7 cut(s) 152, 639, 744, 1146, 1242, 1340, 1697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.