Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 5 - 71 | 1.6e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 14 |
| AcsI | RAATTY | 1 cut(s) | 276 |
| AfaI | GTAC | 1 cut(s) | 135 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AgsI | TTSAA | 1 cut(s) | 20 |
| AluBI | AGCT | 3 cut(s) | 113, 218, 367 |
| AluI | AGCT | 3 cut(s) | 113, 218, 367 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| ApoI | RAATTY | 1 cut(s) | 276 |
| AspLEI | GCGC | 1 cut(s) | 259 |
| BbvI | GCAGC | 1 cut(s) | 227 |
| BccI | CCATC | 2 cut(s) | 101, 247 |
| BfaI | CTAG | 1 cut(s) | 177 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| BfuAI | ACCTGC | 1 cut(s) | 14 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| BmsI | GCATC | 2 cut(s) | 43, 335 |
| BpuEI | CTTGAG | 1 cut(s) | 72 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 102, 132, 151, 181 |
| BseGI | GGATG | 3 cut(s) | 58, 112, 255 |
| BseXI | GCAGC | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BspMI | ACCTGC | 1 cut(s) | 14 |
| Bst4CI | ACNGT | 2 cut(s) | 138, 375 |
| Bst6I | CTCTTC | 1 cut(s) | 341 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 354 |
| BstC8I | GCNNGC | 1 cut(s) | 270 |
| BstF5I | GGATG | 3 cut(s) | 58, 112, 255 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 1 cut(s) | 259 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 354 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstV1I | GCAGC | 1 cut(s) | 227 |
| BtsCI | GGATG | 3 cut(s) | 58, 112, 255 |
| BveI | ACCTGC | 1 cut(s) | 14 |
| Cac8I | GCNNGC | 1 cut(s) | 270 |
| CfoI | GCGC | 1 cut(s) | 259 |
| Csp6I | GTAC | 1 cut(s) | 134 |
| CviAII | CATG | 5 cut(s) | 35, 103, 156, 329, 354 |
| CviJI | RGCY | 4 cut(s) | 113, 218, 268, 367 |
| CviKI_1 | RGCY | 4 cut(s) | 113, 218, 268, 367 |
| CviQI | GTAC | 1 cut(s) | 134 |
| Eam1104I | CTCTTC | 1 cut(s) | 341 |
| EarI | CTCTTC | 1 cut(s) | 341 |
| FaeI | CATG | 5 cut(s) | 38, 106, 159, 332, 357 |
| FaiI | YATR | 8 cut(s) | 36, 104, 157, 294, 330, 342, 355, 362 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FatI | CATG | 5 cut(s) | 34, 102, 155, 328, 353 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FokI | GGATG | 3 cut(s) | 65, 119, 262 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| FspBI | CTAG | 1 cut(s) | 177 |
| GlaI | GCGC | 1 cut(s) | 258 |
| GluI | GCNGC | 1 cut(s) | 216 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HhaI | GCGC | 1 cut(s) | 259 |
| Hin1II | CATG | 5 cut(s) | 38, 106, 159, 332, 357 |
| Hin6I | GCGC | 1 cut(s) | 257 |
| HinP1I | GCGC | 1 cut(s) | 257 |
| HinfI | GANTC | 1 cut(s) | 125 |
| Hpy188III | TCNNGA | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 41 |
| HpyCH4III | ACNGT | 2 cut(s) | 138, 375 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 1 cut(s) | 348 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 354 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| Hsp92II | CATG | 5 cut(s) | 38, 106, 159, 332, 357 |
| HspAI | GCGC | 1 cut(s) | 257 |
| LmnI | GCTCC | 1 cut(s) | 110 |
| LpnPI | CCDG | 5 cut(s) | 9, 71, 223, 245, 293 |
| Lsp1109I | GCAGC | 1 cut(s) | 227 |
| LweI | GCATC | 2 cut(s) | 43, 335 |
| MaeI | CTAG | 1 cut(s) | 177 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 3 cut(s) | 5, 205, 222 |
| MboII | GAAGA | 2 cut(s) | 104, 328 |
| MluCI | AATT | 3 cut(s) | 146, 238, 276 |
| MnlI | CCTC | 1 cut(s) | 344 |
| MseI | TTAA | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 354 |
| NlaIII | CATG | 5 cut(s) | 38, 106, 159, 332, 357 |
| NmuCI | GTSAC | 1 cut(s) | 222 |
| NspI | RCATGY | 1 cut(s) | 38 |
| PciI | ACATGT | 1 cut(s) | 34 |
| PfeI | GAWTC | 1 cut(s) | 125 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| PscI | ACATGT | 1 cut(s) | 34 |
| RsaI | GTAC | 1 cut(s) | 135 |
| RsaNI | GTAC | 1 cut(s) | 134 |
| SaqAI | TTAA | 1 cut(s) | 140 |
| SatI | GCNGC | 1 cut(s) | 216 |
| SetI | ASST | 8 cut(s) | 28, 66, 115, 135, 195, 220, 336, 369 |
| SfaNI | GCATC | 2 cut(s) | 43, 335 |
| SmlI | CTYRAG | 1 cut(s) | 87 |
| SmoI | CTYRAG | 1 cut(s) | 87 |
| Sse9I | AATT | 3 cut(s) | 146, 238, 276 |
| SspMI | CTAG | 1 cut(s) | 177 |
| TaaI | ACNGT | 2 cut(s) | 138, 375 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TasI | AATT | 3 cut(s) | 146, 238, 276 |
| TfiI | GAWTC | 1 cut(s) | 125 |
| Tru1I | TTAA | 1 cut(s) | 140 |
| Tru9I | TTAA | 1 cut(s) | 140 |
| TseFI | GTSAC | 1 cut(s) | 222 |
| TseI | GCWGC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 1 cut(s) | 222 |
| TspDTI | ATGAA | 2 cut(s) | 60, 138 |
| XapI | RAATTY | 1 cut(s) | 276 |
| XceI | RCATGY | 1 cut(s) | 38 |
| XspI | CTAG | 1 cut(s) | 177 |