Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 34 - 109 | 2.7e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 179, 197, 249 |
| AclWI | GGATC | 1 cut(s) | 319 |
| AcsI | RAATTY | 1 cut(s) | 4 |
| AfaI | GTAC | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 83, 203 |
| AflIII | ACRYGT | 1 cut(s) | 223 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 62, 94 |
| AluBI | AGCT | 1 cut(s) | 311 |
| AluI | AGCT | 1 cut(s) | 311 |
| AlwI | GGATC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 1 cut(s) | 13 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AspLEI | GCGC | 1 cut(s) | 143 |
| BbvI | GCAGC | 1 cut(s) | 25 |
| BccI | CCATC | 1 cut(s) | 101 |
| BfaI | CTAG | 5 cut(s) | 186, 219, 260, 287, 331 |
| BfoI | RGCGCY | 1 cut(s) | 144 |
| BisI | GCNGC | 1 cut(s) | 14 |
| BlsI | GCNGC | 1 cut(s) | 15 |
| BmsI | GCATC | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 83, 203 |
| Bse1I | ACTGG | 1 cut(s) | 33 |
| BseGI | GGATG | 2 cut(s) | 112, 307 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 83, 203 |
| BseNI | ACTGG | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 83, 203 |
| Bsp143I | GATC | 3 cut(s) | 231, 240, 324 |
| BspACI | CCGC | 3 cut(s) | 179, 197, 249 |
| BspPI | GGATC | 1 cut(s) | 319 |
| BsrI | ACTGG | 1 cut(s) | 33 |
| BssMI | GATC | 3 cut(s) | 231, 240, 324 |
| Bst4CI | ACNGT | 1 cut(s) | 206 |
| Bst6I | CTCTTC | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstF5I | GGATG | 2 cut(s) | 112, 307 |
| BstH2I | RGCGCY | 1 cut(s) | 144 |
| BstHHI | GCGC | 1 cut(s) | 143 |
| BstKTI | GATC | 3 cut(s) | 234, 243, 327 |
| BstMBI | GATC | 3 cut(s) | 231, 240, 324 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstV1I | GCAGC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 112, 307 |
| BtsI | GCAGTG | 1 cut(s) | 23 |
| BtsIMutI | CAGTG | 1 cut(s) | 23 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CfoI | GCGC | 1 cut(s) | 143 |
| Csp6I | GTAC | 1 cut(s) | 119 |
| CviAII | CATG | 3 cut(s) | 224, 246, 320 |
| CviJI | RGCY | 3 cut(s) | 83, 185, 311 |
| CviKI_1 | RGCY | 3 cut(s) | 83, 185, 311 |
| CviQI | GTAC | 1 cut(s) | 119 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 3 cut(s) | 233, 242, 326 |
| DpnII | GATC | 3 cut(s) | 231, 240, 324 |
| DraI | TTTAAA | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 1 cut(s) | 27 |
| EarI | CTCTTC | 1 cut(s) | 27 |
| FaeI | CATG | 3 cut(s) | 227, 249, 323 |
| FaiI | YATR | 6 cut(s) | 92, 225, 236, 247, 279, 321 |
| FatI | CATG | 3 cut(s) | 223, 245, 319 |
| FauI | CCCGC | 1 cut(s) | 242 |
| Fnu4HI | GCNGC | 1 cut(s) | 14 |
| FokI | GGATG | 2 cut(s) | 119, 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 14 |
| FspBI | CTAG | 5 cut(s) | 186, 219, 260, 287, 331 |
| GlaI | GCGC | 1 cut(s) | 142 |
| GluI | GCNGC | 1 cut(s) | 14 |
| HaeII | RGCGCY | 1 cut(s) | 144 |
| HhaI | GCGC | 1 cut(s) | 143 |
| Hin1II | CATG | 3 cut(s) | 227, 249, 323 |
| Hin6I | GCGC | 1 cut(s) | 141 |
| HinP1I | GCGC | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 1 cut(s) | 301 |
| Hpy188III | TCNNGA | 1 cut(s) | 229 |
| HpyCH4III | ACNGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 2 cut(s) | 256, 305 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| Hsp92II | CATG | 3 cut(s) | 227, 249, 323 |
| HspAI | GCGC | 1 cut(s) | 141 |
| Kzo9I | GATC | 3 cut(s) | 231, 240, 324 |
| LmnI | GCTCC | 1 cut(s) | 268 |
| LpnPI | CCDG | 3 cut(s) | 14, 69, 129 |
| Lsp1109I | GCAGC | 1 cut(s) | 25 |
| LweI | GCATC | 1 cut(s) | 292 |
| MaeI | CTAG | 5 cut(s) | 186, 219, 260, 287, 331 |
| MalI | GATC | 3 cut(s) | 233, 242, 326 |
| MboI | GATC | 3 cut(s) | 231, 240, 324 |
| MboII | GAAGA | 2 cut(s) | 44, 66 |
| MluCI | AATT | 2 cut(s) | 4, 174 |
| MnlI | CCTC | 2 cut(s) | 28, 127 |
| MseI | TTAA | 2 cut(s) | 8, 98 |
| NdeII | GATC | 3 cut(s) | 231, 240, 324 |
| NlaIII | CATG | 3 cut(s) | 227, 249, 323 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PciI | ACATGT | 1 cut(s) | 223 |
| PfeI | GAWTC | 1 cut(s) | 296 |
| PkrI | GCNGC | 1 cut(s) | 15 |
| PscI | ACATGT | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 120 |
| RsaNI | GTAC | 1 cut(s) | 119 |
| SaqAI | TTAA | 2 cut(s) | 8, 98 |
| SatI | GCNGC | 1 cut(s) | 14 |
| Sau3AI | GATC | 3 cut(s) | 231, 240, 324 |
| SetI | ASST | 2 cut(s) | 79, 313 |
| SfaNI | GCATC | 1 cut(s) | 292 |
| Sse9I | AATT | 2 cut(s) | 4, 174 |
| SsiI | CCGC | 3 cut(s) | 179, 197, 249 |
| SspMI | CTAG | 5 cut(s) | 186, 219, 260, 287, 331 |
| TaaI | ACNGT | 1 cut(s) | 206 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TasI | AATT | 2 cut(s) | 4, 174 |
| TfiI | GAWTC | 1 cut(s) | 296 |
| Tru1I | TTAA | 2 cut(s) | 8, 98 |
| Tru9I | TTAA | 2 cut(s) | 8, 98 |
| TscAI | CASTG | 1 cut(s) | 23 |
| TseI | GCWGC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 3 cut(s) | 17, 107, 308 |
| TspGWI | ACGGA | 1 cut(s) | 119 |
| TspRI | CASTG | 1 cut(s) | 23 |
| XapI | RAATTY | 1 cut(s) | 4 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XspI | CTAG | 5 cut(s) | 186, 219, 260, 287, 331 |