RchiOBHm_Chr4g0398671

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000072
Physical Location & Seq
Forward (+)
15241125 .. 15242543
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37083

Sequence Viewer

Length: 1416 bp
ATGGAGCTATTGAAGCAAGGGCTAAGGTGGAGGGTTGGTAATGGAAGTGATATTAGAGTTTTTATTGACCCGTGGGTTCCTGATGTAGAGGGGTTCCGTGTGTCCTATAAGGATGGTATGAATATGTCTATGTTGGTTTCTGAGCTAATTACGGCAAATGGGGAATGGAATATGAACCGACTTGAACAAGTGGGAAGTGTGCAAGAGGTAGAAGCCATACTTGGTCTACCAATTGTTCACAATGGTGGGTGTGATAAGTTGATTTGGAACCAGAACAAACATGGAACATATTCAGTTAAAAGTGGTTATTGGTTAGCGTTGAAGGAGCGAAGGGAGAGAAGAGGTGTTCAAGGTGCCATCCCAGCTCCTACGGATTACTGGCGGCATCTTTGGAAACTCAAAATACCTCCAAAGATGTCACATTTTCTGTGGCGATGTTCTACGGGCTACATGCCTTGTAAGAGTGCTTTGTTCTTGAGGAGAATTATAACTGATCCTACGTGCTCGCGGTGTCAACAATCTTCTGAAACGCCTTTACACGCAACCGGGCTCTGTCCAGTGAGCGTTGCGGTGTTGGAAAAGGCGAGCTTCTACACAAAGTTGAGCCAAGGTACGTGGGATAATTTTTCTAGCTTCCTGGAGGATGCAATGAGGCAATTAACTGTGGATGAGATCAAGCTTCTTGTCGTGTTATTATGGTGTAATTGGAAAGAGAGAAATGCTGTTCAATTTGGTGAGGTGGCACGACCTGCACAGGTTATATATGACATTGGAGCTTCTATATGGGGTGGCATTATACAAGAGTCTAACCATAATTATGGTCAGCTAGGCATGCATGCAAATGACGTAGAAGATAGAGGAAGATGGGTTCCACCCATGCATGGCTCTCTGAAGCTTAATTGTGATGCTTCTGTGATGGCAAATGGGGGCCAAGTTGGTATTGGTTGGATTTGTAGAAATAGTGAGGGAAGGCTTGTGGAAGCTATGGGTGAGAGGATATTGGGGAGATTAAAACCAAGAGCTGCGGAGCTCTTGTGTGTTTTGAAAGGTTTGGAATGGGCAGTAATGCGTGGGTGGAGCGACCTACGGGTGGAAACGGATTGTCTGGAGGCCGTCAGATTGGTTAATGGCTGTGAAGAATGTCTTGCTGATGAGGGATTGATAGTGGAAAGGATCCGTATGCTGCTGGGTGCATTGGAGATTCAAGGGATCCATCATGTGGTACGGGTGGCTAATATGGCTGCTCATGAAGTGGCGGGTTTTGTAGCTCGAGGTAATGGGCGGTATAGTTGGTTAGGGGTTGGGCCCAGTTGGCTCATGGATGTCATTGATAATGACGGACCCATAACTAGTTCGGTTCGTAGGGAAGAGAGTGGGGAGTTCTTGTCCACCACCGGTCATTCCCGGAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

471

Amino Acids

52.79

Weight (kDa)

6.87

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 97 - 189 1.1e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 300 - 419 2.3e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38920
fragaria_vesca FvH4_1g15990 FvH4_1g20960 FvH4_1g24221 FvH4_1g24420 FvH4_2g01203 FvH4_2g08721 FvH4_2g09751 FvH4_2g13111 FvH4_2g14361 FvH4_2g19531 FvH4_2g20801 FvH4_2g36230 FvH4_3g07262 FvH4_3g14231 FvH4_3g21341 FvH4_3g23591 FvH4_3g27972 FvH4_3g28692 FvH4_4g05541 FvH4_4g07351 FvH4_4g07410 FvH4_4g13062 FvH4_4g15487 FvH4_4g15790 FvH4_4g17671 FvH4_4g26583 FvH4_4g28900 FvH4_4g31671 FvH4_5g25821 FvH4_5g31851 FvH4_5g38981 FvH4_6g29902 FvH4_7g03001 FvH4_7g10254
malus_domestica MD03G1147200.v1.1 MD15G1309200.v1.1 MD17G1150900.v1.1
prunus_persica Prupe.1G205500_v2.0.a1 Prupe.2G069500_v2.0.a1 Prupe.2G082600_v2.0.a1 Prupe.3G063400_v2.0.a1 Prupe.3G126800_v2.0.a1 Prupe.3G133900_v2.0.a1 Prupe.3G283300_v2.0.a1 Prupe.4G143500_v2.0.a1 Prupe.4G186900_v2.0.a1 Prupe.6G204400_v2.0.a1 Prupe.6G272800_v2.0.a1 Prupe.7G035500_v2.0.a1 Prupe.7G038400_v2.0.a1 Prupe.7G049300_v2.0.a1 Prupe.7G076800_v2.0.a1 Prupe.8G099500_v2.0.a1 Prupe.8G101300_v2.0.a1
pyrus_communis pycom03g10120 pycom04g16660 pycom08g19920 pycom11g21950 pycom14g01510 pycom14g06470
rosa_chinensis RchiOBHm_Chr1g0323941 RchiOBHm_Chr1g0325331 RchiOBHm_Chr1g0339311 RchiOBHm_Chr1g0345991 RchiOBHm_Chr1g0354891 RchiOBHm_Chr2g0118041 RchiOBHm_Chr3g0468731 RchiOBHm_Chr3g0488841 RchiOBHm_Chr4g0388981 RchiOBHm_Chr4g0398671 RchiOBHm_Chr4g0400431 RchiOBHm_Chr4g0402201 RchiOBHm_Chr4g0430711 RchiOBHm_Chr4g0432871 RchiOBHm_Chr4g0437761 RchiOBHm_Chr5g0066251 RchiOBHm_Chr5g0078071 RchiOBHm_Chr6g0279961 RchiOBHm_Chr6g0289791 RchiOBHm_Chr7g0187741 RchiOBHm_Chr7g0208481
rosa_laevigata RLG00000002376 RLG00000011026 RLG00000011403 RLG00000012646 RLG00000014435 RLG00000014869 RLG00000015450 RLG00000015464 RLG00000016451 RLG00000017121 RLG00000018788 RLG00000018819 RLG00000021054 RLG00000028424 RLG00000030071 RLG00000031242 RLG00000031840 RLG00000031955 RLG00000033437 RLG00000033571 RLG00000034722 RLG00000035706 RLG00000035774 RLG00000036341 RLG00000036639
rosa_multiflora Rmu_co8023178.1_g000001 Rmu_co8119834.1_g000001 Rmu_co8158796.1_g000001 Rmu_co8339863.1_g000001 Rmu_co8512857.1_g000001 Rmu_sc0000174.1_g000006 Rmu_sc0000206.1_g000002 Rmu_sc0000266.1_g000002 Rmu_sc0000361.1_g000026 Rmu_sc0000493.1_g000035 Rmu_sc0000600.1_g000057 Rmu_sc0000796.1_g000012 Rmu_sc0000882.1_g000045 Rmu_sc0000913.1_g000014 Rmu_sc0000946.1_g000041 Rmu_sc0000966.1_g000013 Rmu_sc0001018.1_g000024 Rmu_sc0001018.1_g000025 Rmu_sc0001159.1_g000043 Rmu_sc0001287.1_g000024 Rmu_sc0001291.1_g000041 Rmu_sc0001380.1_g000028 Rmu_sc0001767.1_g000008 Rmu_sc0001802.1_g000010 Rmu_sc0001824.1_g000009 Rmu_sc0001850.1_g000024 Rmu_sc0002105.1_g000011 Rmu_sc0002129.1_g000032 Rmu_sc0002845.1_g000002 Rmu_sc0003054.1_g000001 Rmu_sc0003063.1_g000035 Rmu_sc0003131.1_g000034 Rmu_sc0003303.1_g000022 Rmu_sc0004347.1_g000013 Rmu_sc0004521.1_g000015 Rmu_sc0004618.1_g000056 Rmu_sc0004757.1_g000013 Rmu_sc0005056.1_g000003 Rmu_sc0005354.1_g000011 Rmu_sc0005385.1_g000018 Rmu_sc0005928.1_g000007 Rmu_sc0005933.1_g000003 Rmu_sc0006223.1_g000044 Rmu_sc0006314.1_g000007 Rmu_sc0006399.1_g000008 Rmu_sc0006847.1_g000001 Rmu_sc0007698.1_g000004 Rmu_sc0008509.1_g000023 Rmu_sc0008804.1_g000010 Rmu_sc0008818.1_g000001 Rmu_sc0009489.1_g000001 Rmu_sc0010407.1_g000001 Rmu_sc0010532.1_g000006 Rmu_sc0010988.1_g000001 Rmu_sc0012343.1_g000003 Rmu_sc0012922.1_g000001 Rmu_sc0013078.1_g000009 Rmu_sc0013419.1_g000005 Rmu_sc0013453.1_g000002 Rmu_sc0017867.1_g000004 Rmu_sc0023349.1_g000001 Rmu_sc0025859.1_g000001 Rmu_sc0028153.1_g000002 Rmu_sc0029528.1_g000001 Rmu_sc0030464.1_g000001 Rmu_sc0035933.1_g000001 Rmu_sc0038973.1_g000001 Rmu_sc0040007.1_g000003 Rmu_ssc0000053.1_g000007 Rmu_ssc0000128.1_g000001
rosa_roxburghii Rroxscaffold_175G00431900 Rroxscaffold_1G00018370 Rroxscaffold_1G00035430 Rroxscaffold_1G00040660 Rroxscaffold_1G00048390 Rroxscaffold_1G00048520 Rroxscaffold_2G00078960 Rroxscaffold_2G00086820 Rroxscaffold_2G00112940 Rroxscaffold_2G00118350 Rroxscaffold_2G00139200 Rroxscaffold_2G00141770 Rroxscaffold_3G00221980 Rroxscaffold_3G00227730 Rroxscaffold_3G00241010 Rroxscaffold_3G00242660 Rroxscaffold_4G00305460 Rroxscaffold_4G00324810 Rroxscaffold_4G00326090 Rroxscaffold_5G00334080 Rroxscaffold_5G00335320 Rroxscaffold_5G00344260 Rroxscaffold_5G00348290 Rroxscaffold_5G00381300 Rroxscaffold_6G00392050 Rroxscaffold_6G00401420 Rroxscaffold_6G00405930 Rroxscaffold_6G00418270 Rroxscaffold_6G00421490 Rroxscaffold_7G00167580 Rroxscaffold_7G00172500 Rroxscaffold_7G00173600 Rroxscaffold_7G00185890 Rroxscaffold_7G00192320 Rroxscaffold_7G00197110 Rroxscaffold_7G00209660 Rroxscaffold_7G00211150 Rroxscaffold_7G00216650
rosa_rugosa Rorug01G0040600 Rorug01G0063600 Rorug01G0071700 Rorug01G0184500 Rorug01G0302600 Rorug01G0322600 Rorug01G0403900 Rorug02G0026600 Rorug02G0026700 Rorug02G0074300 Rorug02G0074400 Rorug02G0074500.1 Rorug02G0326900 Rorug02G0351800 Rorug02G0378400 Rorug02G0473800 Rorug03G0023400 Rorug03G0073100 Rorug03G0074900 Rorug03G0118200 Rorug03G0129800 Rorug03G0150100 Rorug03G0178300 Rorug03G0192600 Rorug03G0201700 Rorug03G0231800 Rorug03G0271300 Rorug03G0360000.1 Rorug04G0026900 Rorug04G0036300 Rorug04G0081200 Rorug04G0129600 Rorug04G0153600 Rorug04G0169000 Rorug04G0211000 Rorug04G0211000 Rorug04G0440300 Rorug05G0008100 Rorug05G0083200 Rorug05G0137000 Rorug05G0251200 Rorug05G0411900 Rorug05G0422200 Rorug05G0472700 Rorug06G0026700 Rorug06G0062900 Rorug06G0063000 Rorug06G0069800 Rorug06G0081100 Rorug06G0093500 Rorug06G0095300 Rorug06G0241900 Rorug06G0480400 Rorug07G0043700 Rorug07G0113100 Rorug07G0211300.1 Rorug07G0267700 Rorug07G0281900 Rorug07G0307100
rosa_samantha Rh1AG057800 Rh1AG058600 Rh1AG167200 Rh1AG312300 Rh1AG364500 Rh1BG048900 Rh1BG120100 Rh1BG275500 Rh1BG351000 Rh1CG060500 Rh1CG060600 Rh1DG064500 Rh2AG116500 Rh2BG281500 Rh2BG454900 Rh2BG458000 Rh2BG661700 Rh2CG270000 Rh2DG031300 Rh2DG465000 Rh3DG087300 Rh4AG000500 Rh4AG015500 Rh4AG212800 Rh4BG073500 Rh4BG077400 Rh4BG096800 Rh4BG390300 Rh4CG238100 Rh4CG325900 Rh5AG150200 Rh5CG253600 Rh5DG148600 Rh6AG397200 Rh6BG405900 Rh7BG108000 Rh7BG438000 Rh7CG128200 Rh7CG286000 Rh7CG372000 Rh7CG454900
rosa_wichuraiana Rw1G016000 Rw2G002480 Rw3G029030 Rw4G012010 Rw4G019280 Rw4G020280 Rw4G026190 Rw7G009640 Rw7G020950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 1219
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 508
AciI CCGC 6 cut(s) 382, 508, 569, 1025, 1256, 1282
AclWI GGATC 5 cut(s) 488, 1168, 1181, 1204, 1217
AcuI CTGAAG 1 cut(s) 911
AfaI GTAC 2 cut(s) 613, 1224
AfiI CCNNNNNNNGG 3 cut(s) 881, 1090, 1219
AgeI ACCGGT 1 cut(s) 1394
AgsI TTSAA 7 cut(s) 13, 185, 322, 350, 728, 1045, 1205
AhlI ACTAGT 1 cut(s) 1349
AjnI CCWGG 1 cut(s) 636
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 243
AloI GAACNNNNNNTCC 2 cut(s) 852, 884
Alw21I GWGCWC 2 cut(s) 506, 1032
AlwI GGATC 5 cut(s) 488, 1168, 1181, 1204, 1217
Ama87I CYCGRG 1 cut(s) 1269
AoxI GGCC 3 cut(s) 928, 1110, 1304
ApaI GGGCCC 1 cut(s) 1308
ApeKI GCWGC 3 cut(s) 1022, 1183, 1241
AsiGI ACCGGT 1 cut(s) 1394
Asp700I GAANNNNTTC 1 cut(s) 289
AspS9I GGNCC 4 cut(s) 928, 1304, 1305, 1340
AsuC2I CCSGG 2 cut(s) 547, 1405
AsuHPI GGTGA 2 cut(s) 746, 1001
AvaI CYCGRG 1 cut(s) 1269
AvaII GGWCC 1 cut(s) 1340
BaeGI GKGCMC 1 cut(s) 1308
BamHI GGATCC 2 cut(s) 1173, 1209
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 3 cut(s) 552, 1032, 1308
Bbv12I GWGCWC 2 cut(s) 506, 1032
BbvI GCAGC 3 cut(s) 1009, 1170, 1228
BccI CCATC 5 cut(s) 107, 365, 858, 910, 1221
BceAI ACGGC 2 cut(s) 168, 1097
BciT130I CCWGG 1 cut(s) 638
BcnI CCSGG 2 cut(s) 547, 1405
BcuI ACTAGT 1 cut(s) 1349
BfaI CTAG 3 cut(s) 630, 827, 1350
BfuAI ACCTGC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 1312
BisI GCNGC 4 cut(s) 383, 1023, 1184, 1242
BlsI GCNGC 4 cut(s) 384, 1024, 1185, 1243
Bme1390I CCNGG 3 cut(s) 547, 638, 1405
Bme18I GGWCC 1 cut(s) 1340
BmeT110I CYCGRG 1 cut(s) 1269
BmgT120I GGNCC 4 cut(s) 928, 1304, 1305, 1340
BmrFI CCNGG 3 cut(s) 547, 638, 1405
BmrI ACTGGG 1 cut(s) 1302
BmsI GCATC 3 cut(s) 394, 634, 895
BmuI ACTGGG 1 cut(s) 1302
BpmI CTGGAG 2 cut(s) 659, 1127
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 496
BpuMI CCSGG 2 cut(s) 547, 1405
BsaAI YACGTR 2 cut(s) 501, 615
BsaJI CCNNGG 2 cut(s) 71, 607
BsaWI WCCGGW 1 cut(s) 1394
BsaXI ACNNNNNCTCC 6 cut(s) 22, 52, 1019, 1049, 1370, 1400
Bsc4I CCNNNNNNNGG 3 cut(s) 881, 1090, 1219
Bse118I RCCGGY 1 cut(s) 1394
Bse1I ACTGG 3 cut(s) 383, 557, 1308
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 2 cut(s) 71, 607
BseGI GGATG 5 cut(s) 118, 357, 649, 673, 1327
BseLI CCNNNNNNNGG 3 cut(s) 881, 1090, 1219
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 3 cut(s) 383, 557, 1308
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 1308
BseXI GCAGC 3 cut(s) 1009, 1170, 1228
BseYI CCCAGC 2 cut(s) 361, 1186
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 3 cut(s) 930, 1112, 1306
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 1394
BsiHKAI GWGCWC 2 cut(s) 506, 1032
BsiHKCI CYCGRG 1 cut(s) 1269
BsiSI CCGG 3 cut(s) 546, 1395, 1405
BslI CCNNNNNNNGG 3 cut(s) 881, 1090, 1219
BsnI GGCC 3 cut(s) 930, 1112, 1306
BsoBI CYCGRG 1 cut(s) 1269
Bsp120I GGGCCC 1 cut(s) 1304
Bsp1286I GDGCHC 4 cut(s) 506, 552, 1032, 1308
Bsp143I GATC 4 cut(s) 493, 672, 1173, 1209
BspACI CCGC 6 cut(s) 382, 508, 569, 1025, 1256, 1282
BspANI GGCC 3 cut(s) 930, 1112, 1306
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 1246
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 5 cut(s) 488, 1168, 1181, 1204, 1217
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 1394
BsrI ACTGG 3 cut(s) 383, 557, 1308
BssAI RCCGGY 1 cut(s) 1394
BssECI CCNNGG 2 cut(s) 71, 607
BssMI GATC 4 cut(s) 493, 672, 1173, 1209
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 334, 1362
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBAI YACGTR 2 cut(s) 501, 615
BstC8I GCNNGC 4 cut(s) 506, 586, 833, 837
BstDEI CTNAG 2 cut(s) 23, 141
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 5 cut(s) 118, 357, 649, 673, 1327
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 4 cut(s) 496, 675, 1176, 1212
BstMBI GATC 4 cut(s) 493, 672, 1173, 1209
BstMWI GCNNNNNNNGC 6 cut(s) 13, 362, 749, 832, 1238, 1312
BstNI CCWGG 1 cut(s) 638
BstNSI RCATGY 3 cut(s) 454, 835, 839
BstSCI CCNGG 3 cut(s) 545, 636, 1403
BstSLI GKGCMC 1 cut(s) 1308
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 1009, 1170, 1228
BstX2I RGATCY 2 cut(s) 1173, 1209
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 2 cut(s) 1173, 1209
BsuRI GGCC 3 cut(s) 930, 1112, 1306
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 5 cut(s) 118, 357, 649, 673, 1327
BtsIMutI CAGTG 1 cut(s) 564
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 4 cut(s) 506, 586, 833, 837
CciI TCATGA 1 cut(s) 1246
Cfr10I RCCGGY 1 cut(s) 1394
Cfr13I GGNCC 4 cut(s) 928, 1304, 1305, 1340
Csp6I GTAC 2 cut(s) 612, 1223
CspAI ACCGGT 1 cut(s) 1394
CspCI CAANNNNNGTGG 2 cut(s) 596, 631
CviAII CATG 9 cut(s) 281, 451, 832, 836, 877, 881, 1217, 1247, 1318
CviQI GTAC 2 cut(s) 612, 1223
DdeI CTNAG 2 cut(s) 23, 141
DpnI GATC 4 cut(s) 495, 674, 1175, 1211
DpnII GATC 4 cut(s) 493, 672, 1173, 1209
Eam1104I CTCTTC 2 cut(s) 334, 1362
EarI CTCTTC 2 cut(s) 334, 1362
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 3 cut(s) 552, 1032, 1308
Eco47I GGWCC 1 cut(s) 1340
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 1269
EcoICRI GAGCTC 1 cut(s) 1030
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 607
EcoT22I ATGCAT 2 cut(s) 837, 882
EcoT38I GRGCYC 3 cut(s) 552, 1032, 1308
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 9 cut(s) 284, 454, 835, 839, 880, 884, 1220, 1250, 1321
FalI AAGNNNNNCTT 6 cut(s) 204, 236, 572, 604, 1128, 1160
FatI CATG 9 cut(s) 280, 450, 831, 835, 876, 880, 1216, 1246, 1317
FauI CCCGC 1 cut(s) 1249
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 383, 1023, 1184, 1242
FokI GGATG 5 cut(s) 125, 344, 656, 680, 1334
FriOI GRGCYC 3 cut(s) 552, 1032, 1308
Fsp4HI GCNGC 4 cut(s) 383, 1023, 1184, 1242
FspBI CTAG 3 cut(s) 630, 827, 1350
GluI GCNGC 4 cut(s) 383, 1023, 1184, 1242
GsaI CCCAGC 2 cut(s) 365, 1190
GsuI CTGGAG 2 cut(s) 659, 1127
HaeIII GGCC 3 cut(s) 930, 1112, 1306
HapII CCGG 3 cut(s) 546, 1395, 1405
Hin1II CATG 9 cut(s) 284, 454, 835, 839, 880, 884, 1220, 1250, 1321
HincII GTYRAC 1 cut(s) 515
HindII GTYRAC 1 cut(s) 515
HindIII AAGCTT 2 cut(s) 677, 893
HinfI GANTC 2 cut(s) 803, 1201
HpaII CCGG 3 cut(s) 546, 1395, 1405
HphI GGTGA 2 cut(s) 746, 1001
Hpy166II GTNNAC 4 cut(s) 227, 238, 515, 1389
Hpy188I TCNGA 4 cut(s) 142, 526, 891, 1118
Hpy188III TCNNGA 4 cut(s) 80, 475, 1106, 1247
Hpy8I GTNNAC 4 cut(s) 227, 238, 515, 1389
HpyAV CCTTC 3 cut(s) 316, 324, 963
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 3 cut(s) 500, 614, 846
HpyCH4V TGCA 7 cut(s) 202, 647, 752, 835, 839, 880, 1193
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 362, 749, 832, 1238, 1312
HpyF3I CTNAG 2 cut(s) 23, 141
HpySE526I ACGT 3 cut(s) 500, 614, 846
Hsp92II CATG 9 cut(s) 284, 454, 835, 839, 880, 884, 1220, 1250, 1321
Kzo9I GATC 4 cut(s) 493, 672, 1173, 1209
LmnI GCTCC 6 cut(s) 4, 325, 370, 773, 1027, 1077
Lsp1109I GCAGC 3 cut(s) 1009, 1170, 1228
LweI GCATC 3 cut(s) 394, 634, 895
MaeI CTAG 3 cut(s) 630, 827, 1350
MaeII ACGT 3 cut(s) 500, 614, 846
MaeIII GTNAC 1 cut(s) 417
MalI GATC 4 cut(s) 495, 674, 1175, 1211
MboI GATC 4 cut(s) 493, 672, 1173, 1209
MboII GAAGA 6 cut(s) 351, 513, 863, 873, 1148, 1379
MfeI CAATTG 1 cut(s) 231
MflI RGATCY 2 cut(s) 1173, 1209
MhlI GDGCHC 4 cut(s) 506, 552, 1032, 1308
MluCI AATT 9 cut(s) 147, 231, 483, 622, 656, 703, 728, 814, 898
MlyI GAGTC 1 cut(s) 812
MmeI TCCRAC 2 cut(s) 555, 926
Mph1103I ATGCAT 2 cut(s) 837, 882
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 5 cut(s) 297, 659, 897, 1010, 1125
MslI CAYNNNNRTG 3 cut(s) 243, 816, 840
MspI CCGG 3 cut(s) 546, 1395, 1405
MspR9I CCNGG 3 cut(s) 547, 638, 1405
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 638
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 6 cut(s) 13, 362, 749, 832, 1238, 1312
NciI CCSGG 2 cut(s) 547, 1405
NdeII GATC 4 cut(s) 493, 672, 1173, 1209
NlaIII CATG 9 cut(s) 284, 454, 835, 839, 880, 884, 1220, 1250, 1321
NmuCI GTSAC 1 cut(s) 417
NsiI ATGCAT 2 cut(s) 837, 882
NspI RCATGY 3 cut(s) 454, 835, 839
OliI CACNNNNGTG 1 cut(s) 243
PaeI GCATGC 2 cut(s) 835, 839
PaeR7I CTCGAG 1 cut(s) 1269
PagI TCATGA 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 1201
PflMI CCANNNNNTGG 1 cut(s) 1219
PfoI TCCNGGA 2 cut(s) 636, 1403
PinAI ACCGGT 1 cut(s) 1394
PkrI GCNGC 4 cut(s) 384, 1024, 1185, 1243
PleI GAGTC 1 cut(s) 811
PpsI GAGTC 1 cut(s) 811
Ppu21I YACGTR 2 cut(s) 501, 615
PsiI TTATAA 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 1 cut(s) 636
PspFI CCCAGC 2 cut(s) 361, 1186
PspGI CCWGG 1 cut(s) 636
PspOMI GGGCCC 1 cut(s) 1304
PspPI GGNCC 4 cut(s) 928, 1304, 1305, 1340
PspXI VCTCGAGB 1 cut(s) 1269
PsuI RGATCY 2 cut(s) 1173, 1209
RsaI GTAC 2 cut(s) 613, 1224
RsaNI GTAC 2 cut(s) 612, 1223
RseI CAYNNNNRTG 3 cut(s) 243, 816, 840
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 5 cut(s) 297, 659, 897, 1010, 1125
SatI GCNGC 4 cut(s) 383, 1023, 1184, 1242
Sau3AI GATC 4 cut(s) 493, 672, 1173, 1209
Sau96I GGNCC 4 cut(s) 928, 1304, 1305, 1340
SchI GAGTC 1 cut(s) 812
ScrFI CCNGG 3 cut(s) 547, 638, 1405
SduI GDGCHC 4 cut(s) 506, 552, 1032, 1308
SfaNI GCATC 3 cut(s) 394, 634, 895
Sfr274I CTCGAG 1 cut(s) 1269
SinI GGWCC 1 cut(s) 1340
SlaI CTCGAG 1 cut(s) 1269
SmiMI CAYNNNNRTG 3 cut(s) 243, 816, 840
SmlI CTYRAG 2 cut(s) 475, 1269
SmoI CTYRAG 2 cut(s) 475, 1269
SpeI ACTAGT 1 cut(s) 1349
SphI GCATGC 2 cut(s) 835, 839
Sse9I AATT 9 cut(s) 147, 231, 483, 622, 656, 703, 728, 814, 898
SsiI CCGC 6 cut(s) 382, 508, 569, 1025, 1256, 1282
SspMI CTAG 3 cut(s) 630, 827, 1350
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 3 cut(s) 545, 636, 1403
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 3 cut(s) 503, 617, 849
TaqI TCGA 1 cut(s) 1270
TasI AATT 9 cut(s) 147, 231, 483, 622, 656, 703, 728, 814, 898
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 1201
Tru1I TTAA 5 cut(s) 297, 659, 897, 1010, 1125
Tru9I TTAA 5 cut(s) 297, 659, 897, 1010, 1125
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 1022, 1183, 1241
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 3 cut(s) 134, 188, 1263
TspGWI ACGGA 5 cut(s) 86, 386, 1112, 1166, 1353
TspRI CASTG 1 cut(s) 564
Van91I CCANNNNNTGG 1 cut(s) 1219
VpaK11BI GGWCC 1 cut(s) 1340
XceI RCATGY 3 cut(s) 454, 835, 839
XcmI CCANNNNNNNNNTGG 3 cut(s) 278, 938, 1315
XhoI CTCGAG 1 cut(s) 1269
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 3 cut(s) 630, 827, 1350
Zsp2I ATGCAT 2 cut(s) 837, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.