Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 14 - 135 | 2.7e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 125, 383, 424 |
| AclWI | GGATC | 1 cut(s) | 120 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 23, 109 |
| AgsI | TTSAA | 2 cut(s) | 155, 236 |
| AjnI | CCWGG | 1 cut(s) | 22 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 135, 167 |
| AluBI | AGCT | 1 cut(s) | 36 |
| AluI | AGCT | 1 cut(s) | 36 |
| AlwI | GGATC | 1 cut(s) | 120 |
| AoxI | GGCC | 2 cut(s) | 145, 446 |
| ApaI | GGGCCC | 1 cut(s) | 450 |
| AseI | ATTAAT | 1 cut(s) | 60 |
| AspS9I | GGNCC | 2 cut(s) | 446, 447 |
| AsuHPI | GGTGA | 2 cut(s) | 277, 290 |
| AsuNHI | GCTAGC | 1 cut(s) | 121 |
| BaeGI | GKGCMC | 1 cut(s) | 450 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BceAI | ACGGC | 1 cut(s) | 132 |
| BciT130I | CCWGG | 1 cut(s) | 24 |
| BfaI | CTAG | 3 cut(s) | 18, 122, 366 |
| BisI | GCNGC | 1 cut(s) | 384 |
| BlsI | GCNGC | 1 cut(s) | 385 |
| Bme1390I | CCNGG | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 2 cut(s) | 446, 447 |
| BmiI | GGNNCC | 2 cut(s) | 101, 448 |
| BmrFI | CCNGG | 1 cut(s) | 24 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BmtI | GCTAGC | 1 cut(s) | 125 |
| BsaJI | CCNNGG | 2 cut(s) | 22, 142 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 78, 108, 123, 153 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 23, 109 |
| Bse1I | ACTGG | 1 cut(s) | 198 |
| BseBI | CCWGG | 1 cut(s) | 24 |
| BseDI | CCNNGG | 2 cut(s) | 22, 142 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 23, 109 |
| BseMII | CTCAG | 1 cut(s) | 159 |
| BseNI | ACTGG | 1 cut(s) | 198 |
| BseRI | GAGGAG | 1 cut(s) | 144 |
| BseSI | GKGCMC | 1 cut(s) | 450 |
| BshFI | GGCC | 2 cut(s) | 147, 448 |
| BslFI | GGGAC | 1 cut(s) | 204 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 23, 109 |
| BsmFI | GGGAC | 1 cut(s) | 204 |
| BsnI | GGCC | 2 cut(s) | 147, 448 |
| Bsp120I | GGGCCC | 1 cut(s) | 446 |
| Bsp1286I | GDGCHC | 1 cut(s) | 450 |
| Bsp143I | GATC | 2 cut(s) | 112, 310 |
| BspACI | CCGC | 3 cut(s) | 125, 383, 424 |
| BspANI | GGCC | 2 cut(s) | 147, 448 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BspLI | GGNNCC | 2 cut(s) | 101, 448 |
| BspOI | GCTAGC | 1 cut(s) | 125 |
| BspPI | GGATC | 1 cut(s) | 120 |
| BsrI | ACTGG | 1 cut(s) | 198 |
| BssECI | CCNNGG | 2 cut(s) | 22, 142 |
| BssMI | GATC | 2 cut(s) | 112, 310 |
| BssT1I | CCWWGG | 1 cut(s) | 142 |
| Bst2UI | CCWGG | 1 cut(s) | 24 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 1 cut(s) | 123 |
| BstDEI | CTNAG | 2 cut(s) | 168, 399 |
| BstKTI | GATC | 2 cut(s) | 115, 313 |
| BstMBI | GATC | 2 cut(s) | 112, 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 380 |
| BstNI | CCWGG | 1 cut(s) | 24 |
| BstSCI | CCNGG | 1 cut(s) | 22 |
| BstSLI | GKGCMC | 1 cut(s) | 450 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| BsuRI | GGCC | 2 cut(s) | 147, 448 |
| Cac8I | GCNNGC | 1 cut(s) | 123 |
| Cfr13I | GGNCC | 2 cut(s) | 446, 447 |
| CviAII | CATG | 2 cut(s) | 6, 359 |
| CviJI | RGCY | 8 cut(s) | 21, 36, 147, 254, 386, 398, 410, 448 |
| CviKI_1 | RGCY | 8 cut(s) | 21, 36, 147, 254, 386, 398, 410, 448 |
| DdeI | CTNAG | 2 cut(s) | 168, 399 |
| DpnI | GATC | 2 cut(s) | 114, 312 |
| DpnII | GATC | 2 cut(s) | 112, 310 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 1 cut(s) | 142 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoRII | CCWGG | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 1 cut(s) | 142 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 142 |
| FaeI | CATG | 2 cut(s) | 9, 362 |
| FaiI | YATR | 6 cut(s) | 7, 29, 201, 213, 360, 405 |
| FaqI | GGGAC | 1 cut(s) | 204 |
| FatI | CATG | 2 cut(s) | 5, 358 |
| FauI | CCCGC | 1 cut(s) | 118 |
| Fnu4HI | GCNGC | 1 cut(s) | 384 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| Fsp4HI | GCNGC | 1 cut(s) | 384 |
| FspBI | CTAG | 3 cut(s) | 18, 122, 366 |
| GluI | GCNGC | 1 cut(s) | 384 |
| HaeIII | GGCC | 2 cut(s) | 147, 448 |
| Hin1II | CATG | 2 cut(s) | 9, 362 |
| HindIII | AAGCTT | 1 cut(s) | 34 |
| HinfI | GANTC | 1 cut(s) | 138 |
| HphI | GGTGA | 2 cut(s) | 277, 290 |
| HpyAV | CCTTC | 1 cut(s) | 223 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 380 |
| HpyF3I | CTNAG | 2 cut(s) | 168, 399 |
| Hsp92II | CATG | 2 cut(s) | 9, 362 |
| Kzo9I | GATC | 2 cut(s) | 112, 310 |
| LpnPI | CCDG | 4 cut(s) | 9, 36, 101, 179 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 3 cut(s) | 18, 122, 366 |
| MalI | GATC | 2 cut(s) | 114, 312 |
| MboI | GATC | 2 cut(s) | 112, 310 |
| MboII | GAAGA | 1 cut(s) | 305 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MhlI | GDGCHC | 1 cut(s) | 450 |
| MluCI | AATT | 1 cut(s) | 214 |
| MlyI | GAGTC | 1 cut(s) | 147 |
| MnlI | CCTC | 5 cut(s) | 24, 90, 122, 244, 291 |
| MseI | TTAA | 5 cut(s) | 32, 38, 60, 72, 416 |
| MspR9I | CCNGG | 1 cut(s) | 24 |
| MvaI | CCWGG | 1 cut(s) | 24 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 380 |
| NdeII | GATC | 2 cut(s) | 112, 310 |
| NheI | GCTAGC | 1 cut(s) | 121 |
| NlaIII | CATG | 2 cut(s) | 9, 362 |
| NlaIV | GGNNCC | 2 cut(s) | 101, 448 |
| PkrI | GCNGC | 1 cut(s) | 385 |
| PleI | GAGTC | 1 cut(s) | 146 |
| PpsI | GAGTC | 1 cut(s) | 146 |
| PshBI | ATTAAT | 1 cut(s) | 60 |
| Psp6I | CCWGG | 1 cut(s) | 22 |
| PspGI | CCWGG | 1 cut(s) | 22 |
| PspN4I | GGNNCC | 2 cut(s) | 101, 448 |
| PspOMI | GGGCCC | 1 cut(s) | 446 |
| PspPI | GGNCC | 2 cut(s) | 446, 447 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| SaqAI | TTAA | 5 cut(s) | 32, 38, 60, 72, 416 |
| SatI | GCNGC | 1 cut(s) | 384 |
| Sau3AI | GATC | 2 cut(s) | 112, 310 |
| Sau96I | GGNCC | 2 cut(s) | 446, 447 |
| SchI | GAGTC | 1 cut(s) | 147 |
| ScrFI | CCNGG | 1 cut(s) | 24 |
| SduI | GDGCHC | 1 cut(s) | 450 |
| SetI | ASST | 3 cut(s) | 16, 38, 234 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| Sse9I | AATT | 1 cut(s) | 214 |
| SsiI | CCGC | 3 cut(s) | 125, 383, 424 |
| SspI | AATATT | 1 cut(s) | 76 |
| SspMI | CTAG | 3 cut(s) | 18, 122, 366 |
| StyD4I | CCNGG | 1 cut(s) | 22 |
| StyI | CCWWGG | 1 cut(s) | 142 |
| TaqI | TCGA | 1 cut(s) | 313 |
| TasI | AATT | 1 cut(s) | 214 |
| TauI | GCSGC | 1 cut(s) | 386 |
| Tru1I | TTAA | 5 cut(s) | 32, 38, 60, 72, 416 |
| Tru9I | TTAA | 5 cut(s) | 32, 38, 60, 72, 416 |
| VspI | ATTAAT | 1 cut(s) | 60 |
| XspI | CTAG | 3 cut(s) | 18, 122, 366 |